Wall clock time and date at job start Tue Mar 31 2020 19:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33217 * 126.01675 * 2 1 4 4 C 1.31535 * 109.75748 * 180.25557 * 3 2 1 5 5 O 1.35214 * 125.49264 * 179.78477 * 4 3 2 6 6 N 1.34939 * 109.01753 * 359.75936 * 4 3 2 7 7 H 0.97005 * 126.54968 * 179.97438 * 6 4 3 8 8 C 1.36718 * 126.01553 * 179.84937 * 2 1 3 9 9 C 1.46376 * 126.82476 * 0.02567 * 8 2 1 10 10 O 1.21735 * 120.00474 * 359.70343 * 9 8 2 11 11 N 1.34783 * 119.99685 * 179.70836 * 9 8 2 12 12 C 1.46503 * 120.00141 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.67204 * 34.48768 * 12 11 9 14 14 C 1.53790 * 109.28012 * 272.97019 * 12 11 9 15 15 C 1.52830 * 107.50834 * 175.55185 * 14 12 11 16 16 C 1.50736 * 111.74027 * 59.81658 * 15 14 12 17 17 H 1.08997 * 109.26246 * 186.23184 * 16 15 14 18 18 C 1.53906 * 113.02545 * 65.12323 * 16 15 14 19 19 N 1.47817 * 104.05991 * 198.52324 * 18 16 15 20 20 C 1.36935 * 125.64576 * 203.32702 * 19 18 16 21 21 H 1.07997 * 119.99757 * 180.02562 * 20 19 18 22 22 C 1.38816 * 120.00207 * 0.02644 * 20 19 18 23 23 N 1.31620 * 119.99735 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00006 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47055 * 89.99801 * 24 22 20 26 26 H 1.48495 * 109.46869 * 209.99746 * 24 22 20 27 27 H 1.48501 * 109.47088 * 329.99980 * 24 22 20 28 28 C 1.47171 * 108.70127 * 23.34989 * 19 18 16 29 29 C 1.53993 * 113.94446 * 308.68518 * 16 15 14 30 30 H 1.09001 * 112.20753 * 280.65830 * 29 16 15 31 31 C 1.52589 * 109.67766 * 154.99556 * 12 11 9 32 32 H 1.08994 * 109.47105 * 270.14944 * 1 2 3 33 33 H 1.09000 * 109.46971 * 30.14850 * 1 2 3 34 34 H 1.08996 * 109.47084 * 150.14166 * 1 2 3 35 35 H 0.96701 * 113.99801 * 269.97828 * 5 4 3 36 36 H 0.97003 * 119.99887 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.28056 * 56.51053 * 14 12 11 38 38 H 1.08999 * 110.76969 * 295.44875 * 14 12 11 39 39 H 1.08996 * 109.02939 * 299.23378 * 15 14 12 40 40 H 1.08999 * 109.02292 * 180.39713 * 15 14 12 41 41 H 1.09001 * 110.50710 * 317.17154 * 18 16 15 42 42 H 1.08999 * 110.51115 * 79.87678 * 18 16 15 43 43 H 0.97001 * 119.99503 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.95906 * 241.58315 * 28 19 18 45 45 H 1.09002 * 109.95848 * 120.34290 * 28 19 18 46 46 H 1.09005 * 109.15752 * 61.71742 * 31 12 11 47 47 H 1.08992 * 109.16726 * 302.52622 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0055 5 8 4.6150 1.5463 -0.0113 6 7 3.6181 -0.6386 -0.0039 7 1 4.4243 -1.1781 -0.0074 8 6 2.3110 -1.1058 0.0029 9 6 1.8791 -2.5044 0.0061 10 8 0.6923 -2.7751 0.0117 11 7 2.7956 -3.4927 0.0028 12 6 2.3635 -4.8925 0.0065 13 1 1.4441 -4.9943 -0.5701 14 6 2.1489 -5.3539 1.4578 15 6 1.5937 -6.7770 1.4105 16 6 2.5402 -7.7228 0.7165 17 1 2.0606 -8.6954 0.6070 18 6 3.8667 -7.9105 1.4739 19 7 4.7865 -8.4614 0.4563 20 6 5.9102 -9.2006 0.7129 21 1 6.5193 -9.5585 -0.1039 22 6 6.2666 -9.4898 2.0230 23 7 5.5246 -9.0531 3.0186 24 14 7.7992 -10.4987 2.3730 25 1 8.9663 -9.5921 2.5179 26 1 7.6099 -11.2666 3.6299 27 1 8.0398 -11.4395 1.2495 28 6 4.2946 -8.0833 -0.8783 29 6 3.0128 -7.2324 -0.6647 30 1 2.2666 -7.4044 -1.4404 31 6 3.4532 -5.7683 -0.6050 32 1 -0.3633 0.0027 1.0276 33 1 -0.3633 0.8887 -0.5161 34 1 -0.3633 -0.8912 -0.5116 35 1 4.9200 1.7887 -0.8964 36 1 3.7414 -3.2771 -0.0020 37 1 1.4293 -4.6940 1.9425 38 1 3.0887 -5.3435 2.0097 39 1 0.6433 -6.7701 0.8769 40 1 1.4252 -7.1266 2.4291 41 1 4.2345 -6.9531 1.8430 42 1 3.7407 -8.6149 2.2961 43 1 5.7734 -9.2555 3.9340 44 1 4.0560 -8.9777 -1.4540 45 1 5.0494 -7.4949 -1.4000 46 1 4.3563 -5.6907 0.0005 47 1 3.6691 -5.4182 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979973821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:57 Heat of formation + Delta-G solvation = 1.148956 kcal Electronic energy + Delta-G solvation = -29297.631631 eV Core-core repulsion = 25288.946381 eV Total energy + Delta-G solvation = -4008.685250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.59462 -40.08196 -38.82155 -37.76950 -35.62061 -34.00861 -33.19787 -31.97562 -31.13335 -30.36387 -28.92565 -27.25664 -26.09575 -24.97164 -23.39971 -22.28407 -22.05889 -21.00541 -20.36527 -19.86542 -19.72745 -18.45345 -17.79694 -16.89112 -16.61828 -16.31755 -15.74786 -15.31325 -15.17563 -14.63743 -14.34619 -14.16147 -13.96895 -13.49224 -13.45881 -13.36718 -12.87371 -12.69117 -12.44455 -12.39538 -12.31994 -12.07159 -11.96397 -11.39764 -11.16801 -11.08148 -10.91279 -10.68962 -10.66060 -10.62791 -10.42248 -10.16975 -10.06507 -9.83785 -9.78825 -9.59258 -9.37991 -9.07704 -8.66293 -8.65071 -6.84500 -5.68717 -3.09201 0.84938 2.01359 2.34339 2.95431 3.09080 3.36223 3.41778 3.43680 3.46585 4.40912 4.46138 4.61851 4.81157 4.91377 5.00630 5.20265 5.22667 5.39766 5.44537 5.54445 5.57921 5.60548 5.66846 5.70258 5.77111 5.78629 5.83564 5.85456 6.00897 6.17013 6.22695 6.26519 6.29639 6.41092 6.45273 6.47779 6.53486 6.66296 6.70111 6.84832 6.98033 7.11474 7.28821 7.48380 7.52477 7.61023 7.84882 7.98989 8.32484 9.19133 9.80289 10.46105 11.35600 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.002663 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.370950 B =10512.449016 C =11446.253475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.113 3.887 3 N -0.489 5.489 4 C 0.411 3.589 5 O -0.441 6.441 6 N -0.555 5.555 7 H 0.423 0.577 8 C -0.082 4.082 9 C 0.596 3.404 10 O -0.521 6.521 11 N -0.721 5.721 12 C 0.149 3.851 13 H 0.092 0.908 14 C -0.125 4.125 15 C -0.096 4.096 16 C -0.114 4.114 17 H 0.064 0.936 18 C 0.165 3.835 19 N -0.606 5.606 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.139 3.861 29 C -0.088 4.088 30 H 0.075 0.925 31 C -0.115 4.115 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.407 0.593 36 H 0.392 0.608 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.100 0.900 43 H 0.251 0.749 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 16.807 -8.199 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 N -0.220 5.220 4 C 0.110 3.890 5 O -0.242 6.242 6 N -0.174 5.174 7 H 0.263 0.737 8 C -0.197 4.197 9 C 0.382 3.618 10 O -0.397 6.397 11 N -0.371 5.371 12 C 0.045 3.955 13 H 0.110 0.890 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.134 4.134 17 H 0.083 0.917 18 C 0.040 3.960 19 N -0.332 5.332 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.207 4.207 23 N -0.570 5.570 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.013 3.987 29 C -0.108 4.108 30 H 0.093 0.907 31 C -0.153 4.153 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.265 0.735 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.118 0.882 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.196 17.332 -7.422 20.180 hybrid contribution 2.588 -1.282 -0.267 2.900 sum -4.608 16.050 -7.689 18.383 Atomic orbital electron populations 1.20355 0.85843 1.03949 1.03477 1.20965 0.96938 0.85835 0.98449 1.70292 0.98574 1.30393 1.22767 1.20176 0.87421 0.78682 1.02756 1.84852 1.43328 1.61564 1.34465 1.43730 1.08882 1.07953 1.56789 0.73738 1.20907 0.82899 0.95462 1.20400 1.16640 0.86080 0.82260 0.76779 1.90843 1.15726 1.82740 1.50368 1.46086 1.08992 1.06975 1.75030 1.21233 0.98862 0.77813 0.97545 0.88986 1.22039 1.01992 0.96774 0.95551 1.20782 0.97939 0.93790 1.00960 1.21768 0.98675 0.97843 0.95112 0.91743 1.21791 0.83956 0.97767 0.92452 1.44615 1.27409 1.61439 0.99748 1.19065 0.99420 1.24513 0.92061 0.90652 1.24772 0.99253 1.01149 0.95498 1.69824 1.38742 1.50163 0.98258 0.86106 0.82455 0.79671 0.77469 1.21741 1.21657 1.20746 1.21583 0.92578 0.95146 0.89429 1.22033 0.97584 0.93194 0.97956 0.90674 1.21779 0.98346 0.94838 1.00339 0.90358 0.90875 0.88812 0.73463 0.77470 0.92122 0.90816 0.92712 0.91693 0.96804 0.88190 0.93797 0.96191 0.96070 0.90605 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.87 36.01 0.36 -0.45 16 2 C 0.11 1.34 7.14 -82.54 -0.59 0.75 16 3 N -0.49 -5.91 11.22 -10.83 -0.12 -6.03 16 4 C 0.41 3.98 9.43 -89.60 -0.84 3.14 16 5 O -0.44 -3.10 13.62 -17.34 -0.24 -3.34 16 6 N -0.55 -4.72 6.12 -10.91 -0.07 -4.79 16 7 H 0.42 2.37 8.32 -40.82 -0.34 2.03 16 8 C -0.08 -0.92 7.08 -81.98 -0.58 -1.50 16 9 C 0.60 7.44 7.76 -12.98 -0.10 7.34 16 10 O -0.52 -7.84 14.46 5.16 0.07 -7.77 16 11 N -0.72 -8.08 5.07 -55.01 -0.28 -8.36 16 12 C 0.15 1.95 2.48 -67.73 -0.17 1.78 16 13 H 0.09 1.28 7.57 -51.93 -0.39 0.88 16 14 C -0.13 -1.82 5.42 -26.41 -0.14 -1.96 16 15 C -0.10 -1.47 5.35 -27.95 -0.15 -1.62 16 16 C -0.11 -2.04 2.81 -90.76 -0.26 -2.30 16 17 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.16 3.77 4.81 -2.85 -0.01 3.76 16 19 N -0.61 -14.89 3.41 -169.62 -0.58 -15.46 16 20 C -0.22 -6.04 10.28 -15.06 -0.15 -6.19 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 23 N -0.92 -26.25 10.11 55.49 0.56 -25.69 16 24 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.14 2.75 6.57 -2.44 -0.02 2.74 16 29 C -0.09 -1.42 3.57 -88.86 -0.32 -1.74 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 C -0.11 -1.61 4.12 -26.94 -0.11 -1.72 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.01 6.47 -51.93 -0.34 0.68 16 35 H 0.41 0.63 9.06 45.56 0.41 1.04 16 36 H 0.39 3.51 7.85 -40.82 -0.32 3.19 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.18 6.80 -51.93 -0.35 0.83 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.01 0.34 6.17 -51.93 -0.32 0.02 16 42 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.42 7.76 -51.93 -0.40 0.01 16 46 H 0.08 1.22 7.21 -51.93 -0.37 0.85 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 369.62 15.07 5.57 5.57 Total: -1.00 -33.65 369.62 -9.37 -43.02 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.09 Total: 4.53 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -3.18 Total: 1.63 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.48 Total: -60.33 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.16 Total: -11.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.65 -9.37 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979973821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.167 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds