Wall clock time and date at job start Tue Mar 31 2020 19:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33217 * 126.01675 * 2 1 4 4 C 1.31535 * 109.75748 * 180.25557 * 3 2 1 5 5 O 1.35214 * 125.49264 * 179.78477 * 4 3 2 6 6 N 1.34939 * 109.01753 * 359.75936 * 4 3 2 7 7 H 0.97005 * 126.54968 * 179.97438 * 6 4 3 8 8 C 1.36718 * 126.01553 * 179.84937 * 2 1 3 9 9 C 1.46376 * 126.82476 * 0.02567 * 8 2 1 10 10 O 1.21735 * 120.00474 * 359.70343 * 9 8 2 11 11 N 1.34783 * 119.99685 * 179.70836 * 9 8 2 12 12 C 1.46503 * 120.00141 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.67204 * 34.48768 * 12 11 9 14 14 C 1.53790 * 109.28012 * 272.97019 * 12 11 9 15 15 C 1.52830 * 107.50834 * 175.55185 * 14 12 11 16 16 C 1.50736 * 111.74027 * 59.81658 * 15 14 12 17 17 H 1.08997 * 109.26246 * 186.23184 * 16 15 14 18 18 C 1.53906 * 113.02545 * 65.12323 * 16 15 14 19 19 N 1.47817 * 104.05991 * 198.52324 * 18 16 15 20 20 C 1.36935 * 125.64576 * 203.32702 * 19 18 16 21 21 H 1.07997 * 119.99757 * 180.02562 * 20 19 18 22 22 C 1.38816 * 120.00207 * 0.02644 * 20 19 18 23 23 N 1.31620 * 119.99735 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00006 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47055 * 89.99801 * 24 22 20 26 26 H 1.48495 * 109.46869 * 209.99746 * 24 22 20 27 27 H 1.48501 * 109.47088 * 329.99980 * 24 22 20 28 28 C 1.47171 * 108.70127 * 23.34989 * 19 18 16 29 29 C 1.53993 * 113.94446 * 308.68518 * 16 15 14 30 30 H 1.09001 * 112.20753 * 280.65830 * 29 16 15 31 31 C 1.52589 * 109.67766 * 154.99556 * 12 11 9 32 32 H 1.08994 * 109.47105 * 270.14944 * 1 2 3 33 33 H 1.09000 * 109.46971 * 30.14850 * 1 2 3 34 34 H 1.08996 * 109.47084 * 150.14166 * 1 2 3 35 35 H 0.96701 * 113.99801 * 269.97828 * 5 4 3 36 36 H 0.97003 * 119.99887 * 359.97438 * 11 9 8 37 37 H 1.09007 * 109.28056 * 56.51053 * 14 12 11 38 38 H 1.08999 * 110.76969 * 295.44875 * 14 12 11 39 39 H 1.08996 * 109.02939 * 299.23378 * 15 14 12 40 40 H 1.08999 * 109.02292 * 180.39713 * 15 14 12 41 41 H 1.09001 * 110.50710 * 317.17154 * 18 16 15 42 42 H 1.08999 * 110.51115 * 79.87678 * 18 16 15 43 43 H 0.97001 * 119.99503 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.95906 * 241.58315 * 28 19 18 45 45 H 1.09002 * 109.95848 * 120.34290 * 28 19 18 46 46 H 1.09005 * 109.15752 * 61.71742 * 31 12 11 47 47 H 1.08992 * 109.16726 * 302.52622 * 31 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7092 -0.0055 5 8 4.6150 1.5463 -0.0113 6 7 3.6181 -0.6386 -0.0039 7 1 4.4243 -1.1781 -0.0074 8 6 2.3110 -1.1058 0.0029 9 6 1.8791 -2.5044 0.0061 10 8 0.6923 -2.7751 0.0117 11 7 2.7956 -3.4927 0.0028 12 6 2.3635 -4.8925 0.0065 13 1 1.4441 -4.9943 -0.5701 14 6 2.1489 -5.3539 1.4578 15 6 1.5937 -6.7770 1.4105 16 6 2.5402 -7.7228 0.7165 17 1 2.0606 -8.6954 0.6070 18 6 3.8667 -7.9105 1.4739 19 7 4.7865 -8.4614 0.4563 20 6 5.9102 -9.2006 0.7129 21 1 6.5193 -9.5585 -0.1039 22 6 6.2666 -9.4898 2.0230 23 7 5.5246 -9.0531 3.0186 24 14 7.7992 -10.4987 2.3730 25 1 8.9663 -9.5921 2.5179 26 1 7.6099 -11.2666 3.6299 27 1 8.0398 -11.4395 1.2495 28 6 4.2946 -8.0833 -0.8783 29 6 3.0128 -7.2324 -0.6647 30 1 2.2666 -7.4044 -1.4404 31 6 3.4532 -5.7683 -0.6050 32 1 -0.3633 0.0027 1.0276 33 1 -0.3633 0.8887 -0.5161 34 1 -0.3633 -0.8912 -0.5116 35 1 4.9200 1.7887 -0.8964 36 1 3.7414 -3.2771 -0.0020 37 1 1.4293 -4.6940 1.9425 38 1 3.0887 -5.3435 2.0097 39 1 0.6433 -6.7701 0.8769 40 1 1.4252 -7.1266 2.4291 41 1 4.2345 -6.9531 1.8430 42 1 3.7407 -8.6149 2.2961 43 1 5.7734 -9.2555 3.9340 44 1 4.0560 -8.9777 -1.4540 45 1 5.0494 -7.4949 -1.4000 46 1 4.3563 -5.6907 0.0005 47 1 3.6691 -5.4182 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979973821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:56 Heat of formation + Delta-G solvation = -25.960505 kcal Electronic energy + Delta-G solvation = -29298.807185 eV Core-core repulsion = 25288.946381 eV Total energy + Delta-G solvation = -4009.860804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.37044 -41.26842 -40.02148 -38.40787 -36.96433 -35.24231 -34.28472 -33.56629 -32.11454 -31.62510 -30.45240 -28.25373 -27.51481 -26.77235 -24.29364 -23.63187 -23.11327 -22.20698 -21.42597 -21.12947 -20.51292 -19.58273 -18.88154 -18.72072 -17.41860 -17.32813 -16.92963 -16.54740 -16.40551 -16.03600 -15.70236 -15.34081 -15.16777 -14.77940 -14.68017 -14.24169 -14.04885 -13.84793 -13.68036 -13.59587 -13.45418 -13.30984 -13.05592 -13.00155 -12.79279 -12.65172 -12.55504 -12.18933 -12.05719 -11.85443 -11.62641 -11.54619 -11.31371 -11.19917 -11.15640 -10.95506 -10.85514 -10.66188 -10.13520 -9.48108 -8.82814 -7.76029 -5.18240 0.04853 1.31635 1.45635 1.46740 1.55410 1.55547 2.01059 2.17508 2.49954 2.80721 3.34141 3.60125 3.66879 3.74551 3.82474 3.88147 3.98359 4.07563 4.18493 4.26839 4.36038 4.44378 4.51971 4.57396 4.62205 4.71667 4.84597 4.86609 4.94675 4.96969 4.98432 5.02544 5.09561 5.14003 5.26504 5.30219 5.38924 5.45765 5.49417 5.52461 5.61175 5.77321 5.77648 5.90283 6.33195 6.35332 6.64327 6.68742 7.05744 7.13313 7.81934 8.46444 9.25892 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016551 B = 0.002663 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.370950 B =10512.449016 C =11446.253475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.101 3.899 3 N -0.520 5.520 4 C 0.424 3.576 5 O -0.442 6.442 6 N -0.541 5.541 7 H 0.437 0.563 8 C -0.093 4.093 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.712 5.712 12 C 0.161 3.839 13 H 0.097 0.903 14 C -0.119 4.119 15 C -0.092 4.092 16 C -0.102 4.102 17 H 0.056 0.944 18 C 0.173 3.827 19 N -0.628 5.628 20 C -0.235 4.235 21 H 0.078 0.922 22 C -0.067 4.067 23 N -0.947 5.947 24 Si 0.975 3.025 25 H -0.287 1.287 26 H -0.296 1.296 27 H -0.271 1.271 28 C 0.132 3.868 29 C -0.075 4.075 30 H 0.108 0.892 31 C -0.105 4.105 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.433 0.567 36 H 0.404 0.596 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.055 0.945 41 H -0.005 1.005 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.020 0.980 45 H 0.029 0.971 46 H 0.052 0.948 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 17.936 -9.945 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.034 4.034 3 N -0.252 5.252 4 C 0.122 3.878 5 O -0.247 6.247 6 N -0.161 5.161 7 H 0.279 0.721 8 C -0.208 4.208 9 C 0.387 3.613 10 O -0.426 6.426 11 N -0.362 5.362 12 C 0.057 3.943 13 H 0.114 0.886 14 C -0.158 4.158 15 C -0.130 4.130 16 C -0.121 4.121 17 H 0.074 0.926 18 C 0.048 3.952 19 N -0.354 5.354 20 C -0.364 4.364 21 H 0.096 0.904 22 C -0.260 4.260 23 N -0.597 5.597 24 Si 0.804 3.196 25 H -0.214 1.214 26 H -0.222 1.222 27 H -0.196 1.196 28 C 0.007 3.993 29 C -0.094 4.094 30 H 0.126 0.874 31 C -0.143 4.143 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.295 0.705 36 H 0.239 0.761 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.047 0.953 46 H 0.070 0.930 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.994 18.470 -9.222 21.797 hybrid contribution 2.609 -1.576 0.252 3.059 sum -4.385 16.894 -8.970 19.624 Atomic orbital electron populations 1.20344 0.85326 1.04091 1.03600 1.21248 0.97660 0.86133 0.98358 1.70278 0.99686 1.30887 1.24345 1.20233 0.87510 0.79182 1.00906 1.84821 1.42237 1.60907 1.36779 1.43581 1.08639 1.07775 1.56090 0.72093 1.20639 0.83880 0.94642 1.21643 1.16719 0.85706 0.82723 0.76125 1.90829 1.16864 1.83219 1.51701 1.45900 1.09623 1.06063 1.74620 1.20991 0.98639 0.78518 0.96175 0.88552 1.21949 1.00865 0.96391 0.96594 1.20741 0.98240 0.93485 1.00545 1.21601 0.96289 0.98481 0.95779 0.92568 1.21497 0.86408 0.95380 0.91896 1.44918 1.27154 1.61288 1.02065 1.19425 1.00312 1.24421 0.92260 0.90417 1.25567 1.02188 1.02718 0.95508 1.70094 1.40103 1.51400 0.98096 0.85121 0.79129 0.78272 0.77082 1.21446 1.22233 1.19586 1.21796 0.94410 0.95868 0.87246 1.22042 0.96315 0.93705 0.97362 0.87366 1.21643 0.97461 0.93720 1.01470 0.90215 0.89766 0.89553 0.70484 0.76052 0.91947 0.92877 0.90217 0.92575 0.98694 0.92426 0.94586 0.96167 0.95321 0.92960 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.87 71.24 0.70 -0.80 16 2 C 0.10 2.29 7.14 42.00 0.30 2.59 16 3 N -0.52 -11.84 11.22 -301.66 -3.38 -15.22 16 4 C 0.42 7.35 9.43 179.99 1.70 9.04 16 5 O -0.44 -5.09 13.62 -84.95 -1.16 -6.25 16 6 N -0.54 -8.09 6.12 -300.14 -1.84 -9.93 16 7 H 0.44 3.83 8.32 -92.70 -0.77 3.06 16 8 C -0.09 -1.94 7.08 39.80 0.28 -1.66 16 9 C 0.60 13.99 7.76 86.36 0.67 14.66 16 10 O -0.55 -15.76 14.46 -4.46 -0.06 -15.82 16 11 N -0.71 -14.51 5.07 -446.14 -2.26 -16.77 16 12 C 0.16 3.85 2.48 45.12 0.11 3.96 16 13 H 0.10 2.35 7.57 -2.39 -0.02 2.33 16 14 C -0.12 -3.36 5.42 30.80 0.17 -3.19 16 15 C -0.09 -2.70 5.35 29.80 0.16 -2.54 16 16 C -0.10 -3.58 2.81 -10.89 -0.03 -3.61 16 17 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 18 C 0.17 8.15 4.81 86.43 0.42 8.57 16 19 N -0.63 -31.24 3.41 -690.54 -2.35 -33.59 16 20 C -0.23 -12.94 10.28 84.03 0.86 -12.08 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 22 C -0.07 -3.77 5.49 84.86 0.47 -3.31 16 23 N -0.95 -55.89 10.11 21.65 0.22 -55.67 16 24 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 25 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 26 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.13 5.08 6.57 87.06 0.57 5.65 16 29 C -0.08 -2.25 3.57 -9.65 -0.03 -2.28 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 C -0.10 -2.69 4.12 30.46 0.13 -2.57 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.83 6.47 -2.39 -0.02 1.81 16 35 H 0.43 0.06 9.06 -74.06 -0.67 -0.61 16 36 H 0.40 6.35 7.85 -92.71 -0.73 5.62 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.05 1.72 6.80 -2.39 -0.02 1.70 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.00 -0.24 6.17 -2.39 -0.01 -0.26 16 42 H 0.06 3.22 5.96 -2.39 -0.01 3.21 16 43 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.03 1.07 7.76 -2.39 -0.02 1.05 16 46 H 0.05 1.62 7.21 -2.38 -0.02 1.60 16 47 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.39 369.62 -3.48 -77.86 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -1.13 Total: 15.65 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.47 Total: 12.44 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -9.62 Total: -131.18 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.22 Total: -22.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.39 -3.48 -77.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979973821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.900 kcal (2) G-P(sol) polarization free energy of solvation -74.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds