Wall clock time and date at job start Tue Mar 31 2020 17:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32171 * 119.14127 * 2 1 4 4 C 1.32367 * 120.60653 * 180.26713 * 3 2 1 5 5 C 1.47499 * 120.51061 * 179.73857 * 4 3 2 6 6 O 1.21592 * 119.99811 * 179.72255 * 5 4 3 7 7 N 1.34784 * 119.99894 * 359.72543 * 5 4 3 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47431 * 324.99476 * 8 7 5 10 10 C 1.53001 * 109.47305 * 85.00093 * 8 7 5 11 11 C 1.52997 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47685 * 300.00061 * 11 10 8 13 13 C 1.53001 * 109.46922 * 59.99857 * 12 11 10 14 14 H 1.09000 * 109.46920 * 60.00007 * 13 12 11 15 15 N 1.46497 * 109.47061 * 180.02562 * 13 12 11 16 16 C 1.36939 * 120.00189 * 275.00128 * 15 13 12 17 17 H 1.08000 * 119.99871 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00186 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99967 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47036 * 59.99759 * 20 18 16 22 22 H 1.48498 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46985 * 300.00024 * 20 18 16 24 24 C 1.52997 * 109.47430 * 300.00559 * 13 12 11 25 25 C 1.46674 * 118.97759 * 359.47139 * 4 3 2 26 26 O 1.21853 * 120.78244 * 180.29669 * 25 4 3 27 27 N 1.35150 * 118.43552 * 0.27129 * 25 4 3 28 28 H 0.97003 * 120.37286 * 179.97438 * 27 25 4 29 29 C 1.34898 * 119.26286 * 0.02562 * 27 25 4 30 30 C 1.50698 * 119.50407 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.46694 * 270.24778 * 1 2 3 32 32 H 1.09000 * 109.47259 * 30.25292 * 1 2 3 33 33 H 1.09005 * 109.46728 * 150.25143 * 1 2 3 34 34 H 0.96995 * 120.00015 * 359.72363 * 7 5 4 35 35 H 1.08991 * 109.46933 * 300.00042 * 10 8 7 36 36 H 1.09000 * 109.46920 * 59.99971 * 10 8 7 37 37 H 1.08998 * 109.47010 * 180.02562 * 11 10 8 38 38 H 1.09007 * 109.47181 * 60.00625 * 11 10 8 39 39 H 1.08995 * 109.46906 * 300.00317 * 12 11 10 40 40 H 1.08996 * 109.47625 * 179.97438 * 12 11 10 41 41 H 0.97002 * 120.00371 * 95.00506 * 15 13 12 42 42 H 0.97005 * 120.00363 * 179.97438 * 19 18 16 43 43 H 1.09012 * 109.46868 * 299.99934 * 24 13 12 44 44 H 1.08997 * 109.47117 * 180.02562 * 24 13 12 45 45 H 1.09003 * 109.46582 * 359.97438 * 30 29 27 46 46 H 1.08999 * 109.47546 * 119.99473 * 30 29 27 47 47 H 1.09000 * 109.46892 * 240.00139 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4739 1.1883 -0.0053 5 6 4.1900 2.4777 -0.0111 6 8 5.4057 2.4980 -0.0109 7 7 3.4966 3.6336 -0.0166 8 6 4.2079 4.9143 -0.0218 9 1 5.1198 4.8258 0.5687 10 6 4.5663 5.2928 -1.4602 11 6 5.3086 6.6307 -1.4656 12 6 4.4125 7.7137 -0.8615 13 6 4.0541 7.3351 0.5770 14 1 4.9661 7.2470 1.1674 15 7 3.1956 8.3718 1.1553 16 6 3.7546 9.4838 1.7263 17 1 4.8285 9.5964 1.7507 18 6 2.9412 10.4658 2.2747 19 7 1.6326 10.3284 2.2454 20 14 3.7039 11.9824 3.0543 21 1 4.5090 12.7088 2.0397 22 1 2.6286 12.8721 3.5617 23 1 4.5804 11.5723 4.1807 24 6 3.3118 5.9973 0.5825 25 6 4.2171 -0.0762 0.0006 26 8 5.4356 -0.0834 0.0014 27 7 3.5186 -1.2332 0.0057 28 1 3.9815 -2.0856 0.0093 29 6 2.1703 -1.1895 0.0047 30 6 1.3860 -2.4763 0.0109 31 1 -0.3633 0.0044 1.0277 32 1 -0.3634 0.8877 -0.5177 33 1 -0.3633 -0.8923 -0.5100 34 1 2.5268 3.6174 -0.0208 35 1 5.2044 4.5211 -1.8907 36 1 3.6543 5.3813 -2.0506 37 1 5.5635 6.9006 -2.4904 38 1 6.2206 6.5426 -0.8752 39 1 3.5006 7.8017 -1.4519 40 1 4.9415 8.6667 -0.8649 41 1 2.2311 8.2705 1.1338 42 1 1.0641 11.0144 2.6290 43 1 2.3998 6.0854 -0.0081 44 1 3.0561 5.7279 1.6072 45 1 2.0745 -3.3213 0.0153 46 1 0.7577 -2.5146 0.9007 47 1 0.7587 -2.5238 -0.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981169198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:14 Heat of formation + Delta-G solvation = -34.220563 kcal Electronic energy + Delta-G solvation = -28595.142225 eV Core-core repulsion = 24584.923238 eV Total energy + Delta-G solvation = -4010.218987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12233 -39.71033 -38.32542 -37.75499 -35.82660 -34.55382 -33.61387 -33.10428 -31.06170 -29.99682 -29.04480 -27.76187 -26.99036 -25.07109 -23.87975 -23.50071 -21.91721 -21.39296 -20.34235 -19.57908 -19.01057 -18.63921 -17.27939 -16.79647 -16.62478 -16.29186 -15.80011 -14.94316 -14.78150 -14.47547 -14.42809 -14.32033 -13.92366 -13.74630 -13.71453 -13.54411 -13.45556 -13.35156 -13.06518 -12.61599 -12.49678 -12.22639 -12.05670 -11.99931 -11.69154 -11.58770 -10.93708 -10.85488 -10.81435 -10.63213 -10.38383 -10.26691 -10.17670 -10.08485 -9.84759 -9.60970 -9.45735 -8.88533 -8.79162 -8.38194 -6.90299 -5.71534 -2.99712 -0.25165 1.28134 1.98028 2.50504 3.08149 3.47104 3.48355 3.49925 3.52506 3.53552 3.81685 3.84477 4.17259 4.60369 4.63264 4.68617 4.78092 4.99995 5.06836 5.10939 5.19035 5.21441 5.39667 5.45277 5.57584 5.63667 5.70606 5.78168 5.84337 5.89405 5.95287 5.98137 6.06714 6.12303 6.24017 6.40781 6.43189 6.61575 6.63909 6.73119 6.81981 7.05001 7.08300 7.20663 7.37864 7.66011 7.75870 8.29956 8.47454 9.58439 10.16437 10.51389 11.51241 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002325 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.791965 B =12039.490542 C =12875.912798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.030 4.030 3 N -0.350 5.350 4 C 0.010 3.990 5 C 0.579 3.421 6 O -0.509 6.509 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.089 0.911 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.183 3.817 14 H 0.049 0.951 15 N -0.724 5.724 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.128 4.128 25 C 0.496 3.504 26 O -0.482 6.482 27 N -0.586 5.586 28 H 0.421 0.579 29 C 0.153 3.847 30 C -0.128 4.128 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.768 -29.532 -7.584 30.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 N -0.067 5.067 4 C -0.159 4.159 5 C 0.362 3.638 6 O -0.382 6.382 7 N -0.355 5.355 8 C 0.045 3.955 9 H 0.107 0.893 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.364 5.364 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.167 4.167 25 C 0.287 3.713 26 O -0.353 6.353 27 N -0.222 5.222 28 H 0.261 0.739 29 C 0.038 3.962 30 C -0.185 4.185 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.549 -28.558 -7.472 29.732 hybrid contribution 0.100 -0.390 0.397 0.565 sum -3.450 -28.948 -7.075 29.999 Atomic orbital electron populations 1.20551 0.86770 1.03823 1.03254 1.20142 0.97973 0.85526 1.11955 1.67519 1.08410 1.29648 1.01114 1.23983 0.88840 0.94038 1.09017 1.17039 0.86589 0.82171 0.78004 1.90892 1.12316 1.86477 1.48467 1.45930 1.10850 1.04954 1.73812 1.21087 0.96273 0.81056 0.97061 0.89264 1.21892 1.00555 0.97706 0.96169 1.21485 0.98866 0.94466 1.00480 1.22286 0.98874 0.97781 0.98742 1.20104 0.93729 0.86730 0.92159 0.93319 1.42396 1.05252 1.19879 1.68914 1.19209 0.91714 0.96346 1.29385 0.91205 1.24726 0.95378 0.98992 1.01975 1.69648 1.02112 1.35436 1.51136 0.86282 0.77763 0.83031 0.79217 1.21310 1.21778 1.21305 1.22086 0.98712 0.94901 1.01029 1.19093 0.88453 0.83964 0.79766 1.91070 1.11397 1.85239 1.47560 1.43794 1.06364 1.12029 1.60024 0.73874 1.21562 0.83520 0.99022 0.92136 1.21217 1.00523 0.91348 1.05440 0.90572 0.89986 0.90736 0.75755 0.92103 0.91976 0.92524 0.92126 0.92644 0.91930 0.78323 0.93552 0.91597 0.91234 0.90301 0.88008 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 9.65 36.01 0.35 0.00 16 2 C -0.03 -0.21 6.70 -83.18 -0.56 -0.77 16 3 N -0.35 -3.70 9.57 -4.84 -0.05 -3.75 16 4 C 0.01 0.13 6.96 -80.46 -0.56 -0.43 16 5 C 0.58 9.18 7.77 -12.48 -0.10 9.09 16 6 O -0.51 -9.97 15.17 -15.19 -0.23 -10.20 16 7 N -0.70 -9.92 5.07 -54.86 -0.28 -10.20 16 8 C 0.15 2.30 2.45 -67.93 -0.17 2.13 16 9 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 10 C -0.12 -1.83 5.50 -26.73 -0.15 -1.98 16 11 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 12 C -0.14 -2.48 5.50 -26.73 -0.15 -2.63 16 13 C 0.18 3.67 2.77 -67.93 -0.19 3.49 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 N -0.72 -18.17 5.12 -53.43 -0.27 -18.45 16 16 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C -0.13 -2.15 4.86 -26.73 -0.13 -2.28 16 25 C 0.50 6.29 7.93 -12.69 -0.10 6.19 16 26 O -0.48 -8.10 16.40 -15.42 -0.25 -8.35 16 27 N -0.59 -4.16 5.29 -9.45 -0.05 -4.21 16 28 H 0.42 1.73 8.64 -40.82 -0.35 1.38 16 29 C 0.15 0.78 6.78 -81.98 -0.56 0.22 16 30 C -0.13 -0.05 8.83 36.00 0.32 0.27 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.10 6.43 -51.93 -0.33 -0.24 16 34 H 0.41 5.01 7.97 -40.82 -0.33 4.68 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.38 10.15 7.80 -40.82 -0.32 9.84 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 -0.07 7.90 -51.93 -0.41 -0.48 16 46 H 0.10 -0.06 8.09 -51.93 -0.42 -0.48 16 47 H 0.10 -0.08 7.37 -51.93 -0.38 -0.47 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -37.21 384.99 -9.15 -46.36 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.13 Total: 8.82 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -2.39 Total: 4.15 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.08 Total: -64.23 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.48 Total: -18.55 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.21 -9.15 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981169198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.139 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds