Wall clock time and date at job start Tue Mar 31 2020 17:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32171 * 119.14127 * 2 1 4 4 C 1.32367 * 120.60653 * 180.26713 * 3 2 1 5 5 C 1.47499 * 120.51061 * 179.73857 * 4 3 2 6 6 O 1.21592 * 119.99811 * 179.72255 * 5 4 3 7 7 N 1.34784 * 119.99894 * 359.72543 * 5 4 3 8 8 C 1.46494 * 119.99635 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.47431 * 324.99476 * 8 7 5 10 10 C 1.53001 * 109.47305 * 85.00093 * 8 7 5 11 11 C 1.52997 * 109.47057 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47685 * 300.00061 * 11 10 8 13 13 C 1.53001 * 109.46922 * 59.99857 * 12 11 10 14 14 H 1.09000 * 109.46920 * 60.00007 * 13 12 11 15 15 N 1.46497 * 109.47061 * 180.02562 * 13 12 11 16 16 C 1.36939 * 120.00189 * 275.00128 * 15 13 12 17 17 H 1.08000 * 119.99871 * 359.97438 * 16 15 13 18 18 C 1.38809 * 120.00186 * 180.02562 * 16 15 13 19 19 N 1.31611 * 119.99967 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47036 * 59.99759 * 20 18 16 22 22 H 1.48498 * 109.47293 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46985 * 300.00024 * 20 18 16 24 24 C 1.52997 * 109.47430 * 300.00559 * 13 12 11 25 25 C 1.46674 * 118.97759 * 359.47139 * 4 3 2 26 26 O 1.21853 * 120.78244 * 180.29669 * 25 4 3 27 27 N 1.35150 * 118.43552 * 0.27129 * 25 4 3 28 28 H 0.97003 * 120.37286 * 179.97438 * 27 25 4 29 29 C 1.34898 * 119.26286 * 0.02562 * 27 25 4 30 30 C 1.50698 * 119.50407 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.46694 * 270.24778 * 1 2 3 32 32 H 1.09000 * 109.47259 * 30.25292 * 1 2 3 33 33 H 1.09005 * 109.46728 * 150.25143 * 1 2 3 34 34 H 0.96995 * 120.00015 * 359.72363 * 7 5 4 35 35 H 1.08991 * 109.46933 * 300.00042 * 10 8 7 36 36 H 1.09000 * 109.46920 * 59.99971 * 10 8 7 37 37 H 1.08998 * 109.47010 * 180.02562 * 11 10 8 38 38 H 1.09007 * 109.47181 * 60.00625 * 11 10 8 39 39 H 1.08995 * 109.46906 * 300.00317 * 12 11 10 40 40 H 1.08996 * 109.47625 * 179.97438 * 12 11 10 41 41 H 0.97002 * 120.00371 * 95.00506 * 15 13 12 42 42 H 0.97005 * 120.00363 * 179.97438 * 19 18 16 43 43 H 1.09012 * 109.46868 * 299.99934 * 24 13 12 44 44 H 1.08997 * 109.47117 * 180.02562 * 24 13 12 45 45 H 1.09003 * 109.46582 * 359.97438 * 30 29 27 46 46 H 1.08999 * 109.47546 * 119.99473 * 30 29 27 47 47 H 1.09000 * 109.46892 * 240.00139 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4739 1.1883 -0.0053 5 6 4.1900 2.4777 -0.0111 6 8 5.4057 2.4980 -0.0109 7 7 3.4966 3.6336 -0.0166 8 6 4.2079 4.9143 -0.0218 9 1 5.1198 4.8258 0.5687 10 6 4.5663 5.2928 -1.4602 11 6 5.3086 6.6307 -1.4656 12 6 4.4125 7.7137 -0.8615 13 6 4.0541 7.3351 0.5770 14 1 4.9661 7.2470 1.1674 15 7 3.1956 8.3718 1.1553 16 6 3.7546 9.4838 1.7263 17 1 4.8285 9.5964 1.7507 18 6 2.9412 10.4658 2.2747 19 7 1.6326 10.3284 2.2454 20 14 3.7039 11.9824 3.0543 21 1 4.5090 12.7088 2.0397 22 1 2.6286 12.8721 3.5617 23 1 4.5804 11.5723 4.1807 24 6 3.3118 5.9973 0.5825 25 6 4.2171 -0.0762 0.0006 26 8 5.4356 -0.0834 0.0014 27 7 3.5186 -1.2332 0.0057 28 1 3.9815 -2.0856 0.0093 29 6 2.1703 -1.1895 0.0047 30 6 1.3860 -2.4763 0.0109 31 1 -0.3633 0.0044 1.0277 32 1 -0.3634 0.8877 -0.5177 33 1 -0.3633 -0.8923 -0.5100 34 1 2.5268 3.6174 -0.0208 35 1 5.2044 4.5211 -1.8907 36 1 3.6543 5.3813 -2.0506 37 1 5.5635 6.9006 -2.4904 38 1 6.2206 6.5426 -0.8752 39 1 3.5006 7.8017 -1.4519 40 1 4.9415 8.6667 -0.8649 41 1 2.2311 8.2705 1.1338 42 1 1.0641 11.0144 2.6290 43 1 2.3998 6.0854 -0.0081 44 1 3.0561 5.7279 1.6072 45 1 2.0745 -3.3213 0.0153 46 1 0.7577 -2.5146 0.9007 47 1 0.7587 -2.5238 -0.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981169198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:13 Heat of formation + Delta-G solvation = -62.577999 kcal Electronic energy + Delta-G solvation = -28596.371896 eV Core-core repulsion = 24584.923238 eV Total energy + Delta-G solvation = -4011.448658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.88578 -40.92777 -39.33901 -39.01899 -36.60118 -36.21330 -34.81112 -34.05446 -32.92084 -30.95291 -29.93417 -29.31060 -27.76561 -25.70655 -25.60294 -24.62396 -23.21781 -22.65099 -21.56930 -20.94871 -19.88223 -19.57315 -19.03390 -17.96659 -17.42277 -17.37176 -16.93102 -16.46631 -16.07672 -15.82783 -15.42484 -15.15104 -15.05937 -14.99742 -14.95454 -14.77434 -14.23496 -14.06523 -13.87132 -13.82179 -13.55964 -13.40808 -12.89955 -12.80512 -12.77746 -12.70757 -12.41093 -12.36077 -12.27491 -12.17800 -12.04754 -11.96395 -11.64180 -11.60184 -11.39232 -11.18356 -10.85321 -10.53035 -10.10106 -9.08943 -8.98420 -7.91932 -5.19832 -0.97127 0.50099 1.24269 1.47937 1.50691 1.53349 1.56577 2.10056 2.54328 2.58056 2.91446 3.00249 3.40762 3.41014 3.62911 3.74131 3.85870 3.90511 4.04766 4.26309 4.31308 4.42087 4.52150 4.55389 4.57950 4.64890 4.66864 4.71932 4.76739 4.91073 4.96157 5.02683 5.08605 5.10698 5.17119 5.21752 5.22096 5.26764 5.35692 5.46177 5.50974 5.51230 5.54265 5.66408 6.30101 6.32096 6.53555 6.63611 7.18049 7.36769 8.12055 8.36888 9.31322 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002325 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.791965 B =12039.490542 C =12875.912798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.050 4.050 3 N -0.341 5.341 4 C -0.064 4.064 5 C 0.578 3.422 6 O -0.561 6.561 7 N -0.696 5.696 8 C 0.158 3.842 9 H 0.068 0.932 10 C -0.116 4.116 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.178 3.822 14 H 0.036 0.964 15 N -0.735 5.735 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.279 1.279 22 H -0.294 1.294 23 H -0.281 1.281 24 C -0.112 4.112 25 C 0.490 3.510 26 O -0.541 6.541 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.202 3.798 30 C -0.131 4.131 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.416 0.584 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -32.744 -8.349 34.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.181 4.181 3 N -0.058 5.058 4 C -0.225 4.225 5 C 0.364 3.636 6 O -0.438 6.438 7 N -0.347 5.347 8 C 0.053 3.947 9 H 0.086 0.914 10 C -0.155 4.155 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.069 3.931 14 H 0.054 0.946 15 N -0.374 5.374 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.207 1.207 24 C -0.151 4.151 25 C 0.285 3.715 26 O -0.418 6.418 27 N -0.199 5.199 28 H 0.282 0.718 29 C 0.082 3.918 30 C -0.188 4.188 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.253 0.747 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.671 -31.778 -8.257 33.319 hybrid contribution 0.523 0.253 0.630 0.857 sum -5.147 -31.525 -7.627 32.841 Atomic orbital electron populations 1.20712 0.83939 1.05247 1.04303 1.20955 0.99743 0.85237 1.12121 1.67425 1.07317 1.31883 0.99202 1.23163 0.89585 0.92833 1.16909 1.17441 0.86187 0.83337 0.76603 1.90838 1.14469 1.87368 1.51173 1.45741 1.11094 1.04220 1.73661 1.20838 0.95186 0.81396 0.97276 0.91416 1.21814 1.01006 0.97109 0.95544 1.21412 0.98030 0.93569 1.01392 1.22085 0.99244 0.97880 0.97322 1.20290 0.92878 0.87144 0.92794 0.94632 1.42550 1.05251 1.20349 1.69283 1.19550 0.91911 0.97039 1.28482 0.91047 1.25502 0.95893 1.02016 1.03329 1.69796 1.03258 1.36274 1.52584 0.85268 0.76866 0.79549 0.78435 1.20510 1.22037 1.20691 1.21860 0.98874 0.93469 1.00916 1.19069 0.87865 0.85138 0.79442 1.91024 1.13590 1.86161 1.50996 1.43752 1.07366 1.11516 1.57256 0.71796 1.22521 0.82505 1.01010 0.85717 1.21610 1.00914 0.88569 1.07726 0.89637 0.91080 0.86934 0.74703 0.92432 0.90561 0.90348 0.92413 0.92560 0.93736 0.79378 0.94045 0.90435 0.92159 0.88044 0.85397 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 9.65 71.24 0.69 0.36 16 2 C -0.05 -0.56 6.70 42.03 0.28 -0.28 16 3 N -0.34 -7.02 9.57 -169.24 -1.62 -8.64 16 4 C -0.06 -1.77 6.96 43.71 0.30 -1.47 16 5 C 0.58 19.75 7.77 86.68 0.67 20.42 16 6 O -0.56 -24.00 15.17 15.57 0.24 -23.76 16 7 N -0.70 -20.61 5.07 -445.73 -2.26 -22.87 16 8 C 0.16 5.07 2.45 44.99 0.11 5.18 16 9 H 0.07 2.49 7.58 -2.39 -0.02 2.47 16 10 C -0.12 -3.43 5.50 30.59 0.17 -3.26 16 11 C -0.11 -3.19 5.92 30.59 0.18 -3.01 16 12 C -0.13 -4.60 5.50 30.59 0.17 -4.43 16 13 C 0.18 7.33 2.77 44.99 0.12 7.45 16 14 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 15 N -0.73 -37.81 5.12 -322.95 -1.65 -39.47 16 16 C -0.24 -13.53 9.93 84.03 0.83 -12.70 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 19 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 20 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 C -0.11 -3.86 4.86 30.59 0.15 -3.71 16 25 C 0.49 12.85 7.93 86.39 0.68 13.54 16 26 O -0.54 -19.52 16.40 14.74 0.24 -19.28 16 27 N -0.56 -6.80 5.29 -301.77 -1.60 -8.40 16 28 H 0.44 2.40 8.64 -92.71 -0.80 1.60 16 29 C 0.20 1.22 6.78 41.61 0.28 1.50 16 30 C -0.13 0.78 8.83 71.24 0.63 1.41 16 31 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 -0.42 6.43 -2.38 -0.02 -0.44 16 34 H 0.42 10.55 7.97 -92.71 -0.74 9.81 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.37 20.37 7.80 -92.71 -0.72 19.64 16 42 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 45 H 0.10 -0.89 7.90 -2.39 -0.02 -0.91 16 46 H 0.13 -1.11 8.09 -2.39 -0.02 -1.13 16 47 H 0.13 -1.24 7.37 -2.39 -0.02 -1.26 16 Total: -1.00 -88.16 384.99 0.17 -87.99 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -1.24 Total: 27.65 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 5.75 Total: 17.07 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -6.85 Total: -138.89 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: 0.48 Total: -43.04 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -88.16 0.17 -87.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981169198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.411 kcal (2) G-P(sol) polarization free energy of solvation -88.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds