Wall clock time and date at job start Tue Mar 31 2020 17:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32167 * 119.14356 * 2 1 4 4 C 1.32365 * 120.60849 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51092 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00107 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00207 * 0.02562 * 5 4 3 8 8 C 1.46494 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46728 * 34.99510 * 8 7 5 10 10 C 1.52999 * 109.47397 * 275.00386 * 8 7 5 11 11 C 1.53000 * 109.47541 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46837 * 59.99658 * 11 10 8 13 13 C 1.53005 * 109.47347 * 299.99959 * 12 11 10 14 14 H 1.09004 * 109.46904 * 300.00203 * 13 12 11 15 15 N 1.46495 * 109.47299 * 180.02562 * 13 12 11 16 16 C 1.36934 * 120.00434 * 85.00133 * 15 13 12 17 17 H 1.08006 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00544 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00374 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46719 * 60.00289 * 20 18 16 22 22 H 1.48504 * 109.46938 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47176 * 300.00148 * 20 18 16 24 24 C 1.52995 * 109.47471 * 154.99880 * 8 7 5 25 25 C 1.46676 * 118.97867 * 359.77147 * 4 3 2 26 26 O 1.21861 * 120.78383 * 180.24478 * 25 4 3 27 27 N 1.35152 * 118.43403 * 0.49065 * 25 4 3 28 28 H 0.97001 * 120.37332 * 179.78834 * 27 25 4 29 29 C 1.34902 * 119.25931 * 359.50546 * 27 25 4 30 30 C 1.50697 * 119.49713 * 180.27688 * 29 27 25 31 31 H 1.09003 * 109.47233 * 269.97976 * 1 2 3 32 32 H 1.09003 * 109.47335 * 29.98045 * 1 2 3 33 33 H 1.09004 * 109.46804 * 149.97982 * 1 2 3 34 34 H 0.97004 * 119.99868 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.46495 * 299.99771 * 10 8 7 36 36 H 1.09005 * 109.47268 * 59.98970 * 10 8 7 37 37 H 1.08998 * 109.46893 * 299.99734 * 11 10 8 38 38 H 1.08999 * 109.46725 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.46730 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47317 * 60.00335 * 12 11 10 41 41 H 0.97005 * 120.00012 * 265.00085 * 15 13 12 42 42 H 0.96993 * 120.00213 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.46856 * 300.00227 * 24 8 7 44 44 H 1.08998 * 109.47068 * 60.00259 * 24 8 7 45 45 H 1.08999 * 109.47190 * 0.02562 * 30 29 27 46 46 H 1.09001 * 109.47393 * 120.00123 * 30 29 27 47 47 H 1.09000 * 109.47341 * 239.99766 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1900 2.4777 -0.0001 6 8 5.4058 2.4979 -0.0001 7 7 3.4968 3.6335 -0.0006 8 6 4.2079 4.9143 -0.0006 9 1 5.1206 4.8230 -0.5896 10 6 4.5650 5.2994 1.4364 11 6 5.3083 6.6367 1.4364 12 6 4.4136 7.7174 0.8260 13 6 4.0567 7.3323 -0.6111 14 1 4.9693 7.2407 -1.2001 15 7 3.2006 8.3673 -1.1958 16 6 3.7620 9.4756 -1.7715 17 1 4.8360 9.5870 -1.7943 18 6 2.9508 10.4561 -2.3260 19 7 1.6419 10.3208 -2.2979 20 14 3.7167 11.9684 -3.1108 21 1 4.5950 11.5522 -4.2336 22 1 2.6434 12.8563 -3.6254 23 1 4.5206 12.6984 -2.0978 24 6 3.3129 5.9947 -0.6108 25 6 4.2170 -0.0763 0.0062 26 8 5.4356 -0.0836 0.0113 27 7 3.5185 -1.2333 0.0005 28 1 3.9814 -2.0857 0.0010 29 6 2.1702 -1.1895 0.0001 30 6 1.3860 -2.4764 0.0001 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 2.5269 3.6174 -0.0010 35 1 3.6523 5.3906 2.0255 36 1 5.2026 4.5296 1.8712 37 1 6.2209 6.5451 0.8475 38 1 5.5622 6.9112 2.4603 39 1 4.9434 8.6700 0.8256 40 1 3.5011 7.8090 1.4150 41 1 2.2359 8.2676 -1.1750 42 1 1.0750 11.0061 -2.6850 43 1 3.0586 5.7203 -1.6346 44 1 2.4003 6.0859 -0.0217 45 1 2.0744 -3.3214 0.0010 46 1 0.7578 -2.5191 0.8899 47 1 0.7584 -2.5195 -0.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981169199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:19 Heat of formation + Delta-G solvation = -34.260490 kcal Electronic energy + Delta-G solvation = -28594.549793 eV Core-core repulsion = 24584.329075 eV Total energy + Delta-G solvation = -4010.220718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.12219 -39.70932 -38.32434 -37.75312 -35.82668 -34.55324 -33.61400 -33.10423 -31.05965 -29.99733 -29.04545 -27.76116 -26.99051 -25.07139 -23.87966 -23.50153 -21.91716 -21.39319 -20.34048 -19.57895 -19.01067 -18.63965 -17.27963 -16.79730 -16.62401 -16.29281 -15.80085 -14.96159 -14.74105 -14.50857 -14.42122 -14.31618 -13.92282 -13.75034 -13.70788 -13.55468 -13.45792 -13.33959 -13.06396 -12.61911 -12.49338 -12.22949 -12.05548 -11.99772 -11.69217 -11.58755 -10.93687 -10.85456 -10.81426 -10.63299 -10.38401 -10.26661 -10.17614 -10.08559 -9.84738 -9.60964 -9.45742 -8.88556 -8.79167 -8.38248 -6.90269 -5.71541 -2.99739 -0.25186 1.28084 1.98011 2.50470 3.08103 3.47061 3.48352 3.49932 3.52483 3.53539 3.81691 3.84465 4.17245 4.60471 4.63260 4.68606 4.78064 4.99940 5.06936 5.11105 5.19282 5.20493 5.39807 5.45378 5.57563 5.63735 5.70629 5.78116 5.84256 5.89472 5.95262 5.98131 6.06694 6.12241 6.23963 6.40726 6.43152 6.61592 6.63873 6.73121 6.81921 7.04928 7.08292 7.20611 7.37833 7.65968 7.75803 8.29934 8.47488 9.58425 10.16413 10.51362 11.51243 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.002324 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.390767 B =12043.535032 C =12878.822834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.030 4.030 3 N -0.350 5.350 4 C 0.010 3.990 5 C 0.579 3.421 6 O -0.509 6.509 7 N -0.704 5.704 8 C 0.149 3.851 9 H 0.089 0.911 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.183 3.817 14 H 0.049 0.951 15 N -0.724 5.724 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.128 4.128 25 C 0.496 3.504 26 O -0.482 6.482 27 N -0.586 5.586 28 H 0.421 0.579 29 C 0.153 3.847 30 C -0.128 4.128 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 -29.497 7.677 30.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 N -0.067 5.067 4 C -0.159 4.159 5 C 0.362 3.638 6 O -0.382 6.382 7 N -0.355 5.355 8 C 0.045 3.955 9 H 0.107 0.893 10 C -0.163 4.163 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.364 5.364 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.167 4.167 25 C 0.287 3.713 26 O -0.353 6.353 27 N -0.222 5.222 28 H 0.261 0.739 29 C 0.038 3.962 30 C -0.185 4.185 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.242 0.758 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.120 0.880 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.578 -28.524 7.572 29.728 hybrid contribution 0.102 -0.393 -0.375 0.552 sum -3.476 -28.917 7.197 30.001 Atomic orbital electron populations 1.20551 0.86773 1.03928 1.03157 1.20138 0.97972 0.85525 1.11957 1.67517 1.08407 1.29654 1.01118 1.23982 0.88840 0.94036 1.09010 1.17040 0.86591 0.82170 0.78007 1.90894 1.12312 1.86482 1.48467 1.45930 1.10852 1.04953 1.73809 1.21087 0.96281 0.81057 0.97058 0.89270 1.21894 1.00550 0.97695 0.96178 1.21484 0.98865 0.94477 1.00468 1.22288 0.98884 0.97799 0.98716 1.20114 0.93742 0.86741 0.92121 0.93317 1.42394 1.05270 1.20243 1.68531 1.19209 0.91706 0.96603 1.29124 0.91206 1.24728 0.95383 0.99014 1.01957 1.69651 1.02161 1.35509 1.51020 0.86281 0.77775 0.82999 0.79231 1.21307 1.21776 1.21306 1.22091 0.98718 0.94928 1.00990 1.19097 0.88454 0.83965 0.79765 1.91072 1.11393 1.85245 1.47558 1.43793 1.06364 1.12026 1.60028 0.73874 1.21563 0.83518 0.99021 0.92136 1.21216 1.00523 0.91349 1.05441 0.90646 0.89926 0.90715 0.75755 0.91973 0.92113 0.92124 0.92524 0.91932 0.92644 0.78325 0.93552 0.91236 0.91587 0.90300 0.88041 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 9.65 36.00 0.35 0.00 16 2 C -0.03 -0.21 6.70 -83.19 -0.56 -0.77 16 3 N -0.35 -3.70 9.57 -4.85 -0.05 -3.75 16 4 C 0.01 0.13 6.96 -80.46 -0.56 -0.43 16 5 C 0.58 9.18 7.77 -12.49 -0.10 9.09 16 6 O -0.51 -9.97 15.17 -15.20 -0.23 -10.21 16 7 N -0.70 -9.92 5.07 -54.86 -0.28 -10.20 16 8 C 0.15 2.30 2.45 -67.94 -0.17 2.13 16 9 H 0.09 1.53 7.58 -51.92 -0.39 1.13 16 10 C -0.12 -1.83 5.49 -26.73 -0.15 -1.98 16 11 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 16 12 C -0.14 -2.48 5.50 -26.73 -0.15 -2.63 16 13 C 0.18 3.67 2.77 -67.91 -0.19 3.49 16 14 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 15 N -0.72 -18.17 5.12 -53.40 -0.27 -18.44 16 16 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 18 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.13 -2.15 4.86 -26.71 -0.13 -2.28 16 25 C 0.50 6.29 7.93 -12.69 -0.10 6.19 16 26 O -0.48 -8.10 16.40 -15.43 -0.25 -8.35 16 27 N -0.59 -4.16 5.29 -9.45 -0.05 -4.21 16 28 H 0.42 1.73 8.64 -40.82 -0.35 1.38 16 29 C 0.15 0.78 6.78 -81.98 -0.56 0.22 16 30 C -0.13 -0.05 8.83 36.00 0.32 0.27 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.11 6.43 -51.93 -0.33 -0.23 16 34 H 0.41 5.00 7.97 -40.82 -0.33 4.68 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 -0.07 7.90 -51.93 -0.41 -0.48 16 46 H 0.10 -0.07 8.09 -51.93 -0.42 -0.49 16 47 H 0.10 -0.07 7.37 -51.93 -0.38 -0.45 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -37.21 385.00 -9.15 -46.36 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.13 Total: 8.82 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -2.39 Total: 4.15 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.08 Total: -64.22 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.48 Total: -18.56 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.21 -9.15 -46.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981169199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.095 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds