Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32167 * 119.14356 * 2 1 4 4 C 1.32365 * 120.60849 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51092 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00107 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00207 * 0.02562 * 5 4 3 8 8 C 1.46494 * 120.00556 * 179.97438 * 7 5 4 9 9 H 1.09009 * 109.46728 * 34.99510 * 8 7 5 10 10 C 1.52999 * 109.47397 * 275.00386 * 8 7 5 11 11 C 1.53000 * 109.47541 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46837 * 59.99658 * 11 10 8 13 13 C 1.53005 * 109.47347 * 299.99959 * 12 11 10 14 14 H 1.09004 * 109.46904 * 300.00203 * 13 12 11 15 15 N 1.46495 * 109.47299 * 180.02562 * 13 12 11 16 16 C 1.36934 * 120.00434 * 85.00133 * 15 13 12 17 17 H 1.08006 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.38806 * 120.00544 * 179.97438 * 16 15 13 19 19 N 1.31625 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00374 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46719 * 60.00289 * 20 18 16 22 22 H 1.48504 * 109.46938 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47176 * 300.00148 * 20 18 16 24 24 C 1.52995 * 109.47471 * 154.99880 * 8 7 5 25 25 C 1.46676 * 118.97867 * 359.77147 * 4 3 2 26 26 O 1.21861 * 120.78383 * 180.24478 * 25 4 3 27 27 N 1.35152 * 118.43403 * 0.49065 * 25 4 3 28 28 H 0.97001 * 120.37332 * 179.78834 * 27 25 4 29 29 C 1.34902 * 119.25931 * 359.50546 * 27 25 4 30 30 C 1.50697 * 119.49713 * 180.27688 * 29 27 25 31 31 H 1.09003 * 109.47233 * 269.97976 * 1 2 3 32 32 H 1.09003 * 109.47335 * 29.98045 * 1 2 3 33 33 H 1.09004 * 109.46804 * 149.97982 * 1 2 3 34 34 H 0.97004 * 119.99868 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.46495 * 299.99771 * 10 8 7 36 36 H 1.09005 * 109.47268 * 59.98970 * 10 8 7 37 37 H 1.08998 * 109.46893 * 299.99734 * 11 10 8 38 38 H 1.08999 * 109.46725 * 179.97438 * 11 10 8 39 39 H 1.09004 * 109.46730 * 180.02562 * 12 11 10 40 40 H 1.08998 * 109.47317 * 60.00335 * 12 11 10 41 41 H 0.97005 * 120.00012 * 265.00085 * 15 13 12 42 42 H 0.96993 * 120.00213 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.46856 * 300.00227 * 24 8 7 44 44 H 1.08998 * 109.47068 * 60.00259 * 24 8 7 45 45 H 1.08999 * 109.47190 * 0.02562 * 30 29 27 46 46 H 1.09001 * 109.47393 * 120.00123 * 30 29 27 47 47 H 1.09000 * 109.47341 * 239.99766 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1900 2.4777 -0.0001 6 8 5.4058 2.4979 -0.0001 7 7 3.4968 3.6335 -0.0006 8 6 4.2079 4.9143 -0.0006 9 1 5.1206 4.8230 -0.5896 10 6 4.5650 5.2994 1.4364 11 6 5.3083 6.6367 1.4364 12 6 4.4136 7.7174 0.8260 13 6 4.0567 7.3323 -0.6111 14 1 4.9693 7.2407 -1.2001 15 7 3.2006 8.3673 -1.1958 16 6 3.7620 9.4756 -1.7715 17 1 4.8360 9.5870 -1.7943 18 6 2.9508 10.4561 -2.3260 19 7 1.6419 10.3208 -2.2979 20 14 3.7167 11.9684 -3.1108 21 1 4.5950 11.5522 -4.2336 22 1 2.6434 12.8563 -3.6254 23 1 4.5206 12.6984 -2.0978 24 6 3.3129 5.9947 -0.6108 25 6 4.2170 -0.0763 0.0062 26 8 5.4356 -0.0836 0.0113 27 7 3.5185 -1.2333 0.0005 28 1 3.9814 -2.0857 0.0010 29 6 2.1702 -1.1895 0.0001 30 6 1.3860 -2.4764 0.0001 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 2.5269 3.6174 -0.0010 35 1 3.6523 5.3906 2.0255 36 1 5.2026 4.5296 1.8712 37 1 6.2209 6.5451 0.8475 38 1 5.5622 6.9112 2.4603 39 1 4.9434 8.6700 0.8256 40 1 3.5011 7.8090 1.4150 41 1 2.2359 8.2676 -1.1750 42 1 1.0750 11.0061 -2.6850 43 1 3.0586 5.7203 -1.6346 44 1 2.4003 6.0859 -0.0217 45 1 2.0744 -3.3214 0.0010 46 1 0.7578 -2.5191 0.8899 47 1 0.7584 -2.5195 -0.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981169199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -62.618259 kcal Electronic energy + Delta-G solvation = -28595.779478 eV Core-core repulsion = 24584.329075 eV Total energy + Delta-G solvation = -4011.450403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88537 -40.92665 -39.33724 -39.01754 -36.60112 -36.21287 -34.81081 -34.05444 -32.91915 -30.95340 -29.93378 -29.31023 -27.76559 -25.70713 -25.60307 -24.62377 -23.21815 -22.65049 -21.56764 -20.94898 -19.88212 -19.57325 -19.03465 -17.96648 -17.41968 -17.37461 -16.93092 -16.46682 -16.07833 -15.82206 -15.42558 -15.14860 -15.06358 -15.00234 -14.95026 -14.77362 -14.23585 -14.06503 -13.86296 -13.82481 -13.56122 -13.40833 -12.89938 -12.80586 -12.77482 -12.71000 -12.40968 -12.35922 -12.27572 -12.17894 -12.04806 -11.96353 -11.64242 -11.60142 -11.39233 -11.18315 -10.85274 -10.53052 -10.10154 -9.08922 -8.98374 -7.91915 -5.19837 -0.97137 0.50092 1.24264 1.47932 1.50723 1.53339 1.56591 2.10012 2.54326 2.58084 2.91430 3.00224 3.40755 3.41020 3.62890 3.74122 3.85886 3.90507 4.04774 4.26278 4.31283 4.42059 4.52131 4.55401 4.57855 4.64928 4.66792 4.71966 4.76669 4.90952 4.96298 5.02628 5.08624 5.10670 5.17038 5.21741 5.22081 5.26768 5.35649 5.46138 5.50968 5.51276 5.54204 5.66368 6.30142 6.32111 6.53542 6.63600 7.18033 7.36779 8.12054 8.36884 9.31347 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018376 B = 0.002324 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.390767 B =12043.535032 C =12878.822834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.050 4.050 3 N -0.341 5.341 4 C -0.064 4.064 5 C 0.578 3.422 6 O -0.561 6.561 7 N -0.696 5.696 8 C 0.158 3.842 9 H 0.068 0.932 10 C -0.116 4.116 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.178 3.822 14 H 0.036 0.964 15 N -0.735 5.735 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.112 4.112 25 C 0.490 3.510 26 O -0.541 6.541 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.202 3.798 30 C -0.131 4.131 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -32.711 8.427 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.180 4.180 3 N -0.058 5.058 4 C -0.225 4.225 5 C 0.364 3.636 6 O -0.439 6.439 7 N -0.347 5.347 8 C 0.053 3.947 9 H 0.086 0.914 10 C -0.155 4.155 11 C -0.144 4.144 12 C -0.165 4.165 13 C 0.069 3.931 14 H 0.054 0.946 15 N -0.374 5.374 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.205 1.205 24 C -0.151 4.151 25 C 0.285 3.715 26 O -0.418 6.418 27 N -0.199 5.199 28 H 0.282 0.718 29 C 0.082 3.918 30 C -0.188 4.188 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.148 0.852 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.705 -31.746 8.341 33.315 hybrid contribution 0.527 0.250 -0.599 0.835 sum -5.178 -31.496 7.743 32.844 Atomic orbital electron populations 1.20712 0.83938 1.05152 1.04404 1.20952 0.99744 0.85236 1.12116 1.67423 1.07313 1.31885 0.99203 1.23161 0.89584 0.92830 1.16910 1.17442 0.86188 0.83337 0.76604 1.90840 1.14467 1.87374 1.51175 1.45741 1.11096 1.04218 1.73656 1.20838 0.95196 0.81403 0.97266 0.91422 1.21816 1.00999 0.97096 0.95558 1.21411 0.98033 0.93588 1.01368 1.22087 0.99250 0.97887 0.97310 1.20301 0.92897 0.87163 0.92744 0.94630 1.42549 1.05263 1.20714 1.68903 1.19549 0.91905 0.97282 1.28228 0.91046 1.25505 0.95905 1.02024 1.03319 1.69799 1.03310 1.36348 1.52466 0.85266 0.76870 0.79538 0.78434 1.20697 1.22039 1.20502 1.21866 0.98876 0.93486 1.00888 1.19072 0.87865 0.85139 0.79442 1.91026 1.13587 1.86165 1.51000 1.43752 1.07366 1.11514 1.57256 0.71796 1.22521 0.82503 1.01009 0.85721 1.21609 1.00914 0.88568 1.07728 0.89345 0.91234 0.87061 0.74703 0.90561 0.92449 0.92412 0.90349 0.93739 0.92559 0.79380 0.94046 0.92150 0.90424 0.88046 0.85244 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 9.65 71.23 0.69 0.37 16 2 C -0.05 -0.56 6.70 42.03 0.28 -0.28 16 3 N -0.34 -7.01 9.57 -169.25 -1.62 -8.63 16 4 C -0.06 -1.77 6.96 43.71 0.30 -1.46 16 5 C 0.58 19.75 7.77 86.68 0.67 20.42 16 6 O -0.56 -24.01 15.17 15.55 0.24 -23.77 16 7 N -0.70 -20.61 5.07 -445.74 -2.26 -22.87 16 8 C 0.16 5.07 2.45 44.99 0.11 5.18 16 9 H 0.07 2.49 7.58 -2.38 -0.02 2.47 16 10 C -0.12 -3.43 5.49 30.59 0.17 -3.26 16 11 C -0.11 -3.19 5.92 30.59 0.18 -3.01 16 12 C -0.13 -4.60 5.50 30.59 0.17 -4.43 16 13 C 0.18 7.33 2.77 45.01 0.12 7.45 16 14 H 0.04 1.56 8.08 -2.38 -0.02 1.54 16 15 N -0.73 -37.81 5.12 -322.86 -1.65 -39.46 16 16 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 20 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 C -0.11 -3.86 4.86 30.61 0.15 -3.71 16 25 C 0.49 12.85 7.93 86.39 0.68 13.54 16 26 O -0.54 -19.53 16.40 14.71 0.24 -19.29 16 27 N -0.56 -6.80 5.29 -301.75 -1.60 -8.40 16 28 H 0.44 2.41 8.64 -92.71 -0.80 1.60 16 29 C 0.20 1.22 6.78 41.61 0.28 1.50 16 30 C -0.13 0.78 8.83 71.24 0.63 1.41 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.11 -0.38 6.43 -2.38 -0.02 -0.40 16 34 H 0.42 10.54 7.97 -92.71 -0.74 9.81 16 35 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.37 20.36 7.80 -92.70 -0.72 19.64 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.10 -0.89 7.90 -2.39 -0.02 -0.91 16 46 H 0.13 -1.18 8.09 -2.39 -0.02 -1.20 16 47 H 0.13 -1.18 7.37 -2.39 -0.02 -1.20 16 Total: -1.00 -88.16 385.00 0.17 -87.99 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -1.24 Total: 27.65 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 5.75 Total: 17.08 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -6.85 Total: -138.88 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: 0.48 Total: -43.06 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -88.16 0.17 -87.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981169199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.375 kcal (2) G-P(sol) polarization free energy of solvation -88.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds