Wall clock time and date at job start Tue Mar 31 2020 18:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34490 * 126.83347 * 2 1 4 4 N 1.36443 * 108.85241 * 180.25116 * 3 2 1 5 5 H 0.96996 * 124.84529 * 179.76912 * 4 3 2 6 6 C 1.34655 * 110.30025 * 359.75246 * 4 3 2 7 7 C 1.50700 * 125.80453 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46949 * 267.71488 * 7 6 4 9 9 N 1.34776 * 119.99551 * 185.24766 * 8 7 6 10 10 O 1.21271 * 120.00452 * 5.24790 * 8 7 6 11 11 C 1.36772 * 108.39686 * 359.97438 * 6 4 3 12 12 C 1.47266 * 126.93966 * 179.97438 * 11 6 4 13 13 O 1.21633 * 119.99890 * 90.77642 * 12 11 6 14 14 N 1.34776 * 120.00058 * 270.77369 * 12 11 6 15 15 C 1.48216 * 119.96855 * 175.90596 * 14 12 11 16 16 C 1.47137 * 110.34329 * 102.50805 * 15 14 12 17 17 C 1.53241 * 111.81485 * 58.22420 * 16 15 14 18 18 N 1.43457 * 108.26462 * 281.67720 * 17 16 15 19 19 C 1.36941 * 118.94164 * 273.78225 * 18 17 16 20 20 H 1.08000 * 119.99493 * 32.80338 * 19 18 17 21 21 C 1.38810 * 120.00047 * 212.80963 * 19 18 17 22 22 N 1.31622 * 119.99766 * 197.00132 * 21 19 18 23 23 Si 1.86799 * 119.99863 * 16.99977 * 21 19 18 24 24 H 1.48501 * 109.46915 * 272.77344 * 23 21 19 25 25 H 1.48507 * 109.47069 * 152.77755 * 23 21 19 26 26 H 1.48491 * 109.47447 * 32.77705 * 23 21 19 27 27 C 1.48860 * 122.12141 * 93.50379 * 18 17 16 28 28 C 1.43621 * 119.97319 * 355.92378 * 14 12 11 29 29 H 1.08991 * 109.47380 * 275.88079 * 1 2 3 30 30 H 1.09003 * 109.46789 * 35.88169 * 1 2 3 31 31 H 1.09001 * 109.47112 * 155.87911 * 1 2 3 32 32 H 1.08001 * 125.57168 * 0.03939 * 3 2 1 33 33 H 1.09005 * 109.46811 * 27.70644 * 7 6 4 34 34 H 1.09000 * 109.47455 * 147.70928 * 7 6 4 35 35 H 0.96996 * 120.00742 * 359.97438 * 9 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.31887 * 222.77227 * 15 14 12 38 38 H 1.08996 * 109.32312 * 342.41396 * 15 14 12 39 39 H 1.09009 * 109.00407 * 178.89904 * 16 15 14 40 40 H 1.08992 * 109.00930 * 297.75905 * 16 15 14 41 41 H 1.09001 * 109.48759 * 162.03666 * 17 16 15 42 42 H 1.09004 * 109.73485 * 41.46303 * 17 16 15 43 43 H 0.97002 * 119.99529 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.48356 * 80.87632 * 27 18 17 45 45 H 1.09000 * 109.47823 * 200.91506 * 27 18 17 46 46 H 1.08991 * 108.87498 * 149.86560 * 28 14 12 47 47 H 1.09006 * 108.87217 * 31.42787 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3839 1.2413 -0.0100 6 6 3.6656 -0.6902 -0.0039 7 6 4.9225 -1.5216 -0.0082 8 6 5.3039 -1.8481 -1.4292 9 7 6.3398 -2.6742 -1.6759 10 8 4.6788 -1.3675 -2.3506 11 6 2.3863 -1.1740 0.0036 12 6 1.9749 -2.5880 0.0073 13 8 1.7970 -3.1668 1.0622 14 7 1.7954 -3.2408 -1.1581 15 6 1.4702 -4.6868 -1.1543 16 6 0.0363 -4.8892 -1.4149 17 6 -0.3907 -4.2796 -2.7544 18 7 -0.5314 -2.8627 -2.5791 19 6 -1.7241 -2.3664 -2.1248 20 1 -2.3208 -2.9432 -1.4337 21 6 -2.1661 -1.1221 -2.5526 22 7 -3.1141 -0.4962 -1.8878 23 14 -1.4155 -0.3359 -4.0718 24 1 -0.2082 0.4369 -3.6839 25 1 -2.4065 0.5756 -4.6984 26 1 -1.0352 -1.3949 -5.0407 27 6 0.5794 -1.9151 -2.8694 28 6 1.9199 -2.5346 -2.4025 29 1 -0.3633 0.1053 1.0222 30 1 -0.3633 0.8327 -0.6024 31 1 -0.3633 -0.9379 -0.4200 32 1 1.9868 2.1059 0.0006 33 1 5.7296 -0.9625 0.4652 34 1 4.7487 -2.4459 0.5429 35 1 6.8401 -3.0583 -0.9390 36 1 6.5851 -2.8846 -2.5905 37 1 2.0517 -5.1892 -1.9273 38 1 1.7207 -5.1103 -0.1818 39 1 -0.1749 -5.9586 -1.4268 40 1 -0.5392 -4.4230 -0.6153 41 1 -1.3439 -4.7094 -3.0622 42 1 0.3677 -4.4840 -3.5103 43 1 -3.4227 0.3736 -2.1865 44 1 0.6219 -1.7223 -3.9413 45 1 0.4069 -0.9792 -2.3380 46 1 2.2736 -3.2266 -3.1667 47 1 2.6542 -1.7378 -2.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982007107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:58 Heat of formation + Delta-G solvation = 7.634355 kcal Electronic energy + Delta-G solvation = -32010.495655 eV Core-core repulsion = 28002.091633 eV Total energy + Delta-G solvation = -4008.404021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22229 -39.29956 -39.13919 -36.84761 -34.11524 -33.88659 -32.89702 -32.33912 -31.30046 -31.14068 -28.20144 -27.36708 -25.74630 -25.50999 -23.22176 -23.10512 -21.27377 -20.60154 -19.74386 -19.06980 -18.01209 -17.80763 -17.05788 -16.74840 -16.53773 -16.09730 -15.74436 -15.26209 -14.93977 -14.46407 -14.26416 -13.87934 -13.61721 -13.43121 -13.31524 -13.12411 -12.93578 -12.67929 -12.41966 -12.35319 -12.19616 -11.99383 -11.73464 -11.51910 -11.35274 -11.09542 -10.77201 -10.62617 -10.27880 -10.23629 -10.17457 -9.95925 -9.80687 -9.78294 -9.41377 -9.29962 -8.44781 -8.09206 -7.92629 -7.78049 -6.68088 -5.82995 -3.23639 2.25015 2.45236 3.00941 3.18199 3.33295 3.44222 3.46929 3.56447 3.59727 3.87780 4.50812 4.64957 4.81004 4.87868 5.10612 5.26122 5.29693 5.44710 5.52330 5.61236 5.69682 5.80958 5.92400 5.96966 6.08201 6.09527 6.21566 6.32610 6.38201 6.46971 6.52804 6.63257 6.64151 6.66954 6.82494 6.84713 6.86577 6.99697 7.06812 7.12491 7.32765 7.34464 7.48052 7.77377 8.07644 8.08609 8.20166 8.52583 8.83670 9.14589 9.87379 10.24767 11.32576 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.006049 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.799091 B = 4627.637789 C = 5306.006515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.108 4.108 3 C -0.021 4.021 4 N -0.546 5.546 5 H 0.409 0.591 6 C 0.064 3.936 7 C -0.076 4.076 8 C 0.514 3.486 9 N -0.858 5.858 10 O -0.518 6.518 11 C -0.185 4.185 12 C 0.599 3.401 13 O -0.554 6.554 14 N -0.576 5.576 15 C 0.128 3.872 16 C -0.168 4.168 17 C 0.163 3.837 18 N -0.601 5.601 19 C -0.259 4.259 20 H 0.080 0.920 21 C 0.038 3.962 22 N -0.905 5.905 23 Si 0.876 3.124 24 H -0.284 1.284 25 H -0.307 1.307 26 H -0.276 1.276 27 C 0.106 3.894 28 C 0.090 3.910 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.167 0.833 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.400 0.600 36 H 0.402 0.598 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.260 0.740 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.162 -1.950 2.354 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.149 4.149 4 N -0.141 5.141 5 H 0.245 0.755 6 C -0.052 4.052 7 C -0.117 4.117 8 C 0.298 3.702 9 N -0.422 5.422 10 O -0.392 6.392 11 C -0.197 4.197 12 C 0.386 3.614 13 O -0.433 6.433 14 N -0.306 5.306 15 C 0.007 3.993 16 C -0.209 4.209 17 C 0.036 3.964 18 N -0.323 5.323 19 C -0.388 4.388 20 H 0.097 0.903 21 C -0.162 4.162 22 N -0.547 5.547 23 Si 0.707 3.293 24 H -0.211 1.211 25 H -0.235 1.235 26 H -0.202 1.202 27 C -0.020 4.020 28 C -0.036 4.036 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.184 0.816 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.523 -1.621 2.416 20.728 hybrid contribution 1.022 0.647 -1.019 1.582 sum 21.546 -0.974 1.398 21.613 Atomic orbital electron populations 1.20372 0.87720 1.05513 1.01203 1.20742 0.96059 0.89814 1.04859 1.21465 0.81956 0.99135 1.12309 1.41108 1.08025 1.05411 1.59543 0.75527 1.18927 0.93462 0.83399 1.09366 1.20170 0.95154 1.01353 0.95034 1.20566 0.79676 0.78459 0.91521 1.43835 1.34944 1.51190 1.12269 1.90757 1.50993 1.51327 1.46150 1.20007 0.92207 0.93028 1.14417 1.17468 0.75859 0.84858 0.83167 1.90711 1.52578 1.68710 1.31274 1.47315 1.68119 1.09336 1.05871 1.20569 0.96742 0.80449 1.01586 1.21726 0.96362 0.99827 1.03005 1.20223 0.98530 0.84927 0.92754 1.43923 1.10031 1.00813 1.77576 1.18825 0.95981 1.02755 1.21242 0.90255 1.25301 0.96043 0.97380 0.97456 1.69827 1.31165 1.14631 1.39126 0.87087 0.77495 0.78760 0.85981 1.21095 1.23505 1.20204 1.22613 0.87197 0.94911 0.97235 1.21942 0.99213 0.97427 0.85001 0.92563 0.92206 0.88147 0.81620 0.87856 0.86801 0.77197 0.76748 0.92375 0.90543 0.92532 0.90789 0.92866 0.94959 0.93002 0.95688 0.90228 0.92691 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.43 36.01 0.34 -1.64 16 2 C -0.11 -2.08 5.98 -102.54 -0.61 -2.69 16 3 C -0.02 -0.32 11.82 -16.82 -0.20 -0.52 16 4 N -0.55 -6.94 5.90 -9.11 -0.05 -6.99 16 5 H 0.41 3.57 8.96 -40.82 -0.37 3.21 16 6 C 0.06 0.93 5.45 -81.88 -0.45 0.48 16 7 C -0.08 -0.78 6.03 -29.03 -0.18 -0.95 16 8 C 0.51 5.63 8.09 -10.98 -0.09 5.54 16 9 N -0.86 -5.59 8.87 31.22 0.28 -5.31 16 10 O -0.52 -7.97 14.25 5.57 0.08 -7.89 16 11 C -0.19 -3.48 4.22 -103.35 -0.44 -3.92 16 12 C 0.60 12.31 7.07 -12.59 -0.09 12.23 16 13 O -0.55 -12.77 16.57 5.25 0.09 -12.69 16 14 N -0.58 -11.06 2.46 -177.99 -0.44 -11.50 16 15 C 0.13 2.21 5.67 -5.91 -0.03 2.18 16 16 C -0.17 -3.13 5.63 -29.42 -0.17 -3.30 16 17 C 0.16 3.34 5.59 -5.53 -0.03 3.31 16 18 N -0.60 -14.43 2.23 -172.35 -0.38 -14.81 16 19 C -0.26 -7.19 8.43 -15.06 -0.13 -7.32 16 20 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 21 C 0.04 1.07 4.96 -17.43 -0.09 0.98 16 22 N -0.90 -27.11 13.97 55.49 0.78 -26.33 16 23 Si 0.88 22.85 24.05 -169.99 -4.09 18.76 16 24 H -0.28 -7.24 6.66 56.52 0.38 -6.86 16 25 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 26 H -0.28 -7.21 6.77 56.52 0.38 -6.82 16 27 C 0.11 2.44 4.42 -1.75 -0.01 2.43 16 28 C 0.09 1.75 5.12 -4.58 -0.02 1.73 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.10 2.58 5.66 -51.93 -0.29 2.28 16 32 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.15 7.98 -51.93 -0.41 0.74 16 35 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 36 H 0.40 2.38 8.93 -40.82 -0.36 2.01 16 37 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.08 1.32 7.17 -51.93 -0.37 0.95 16 39 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 40 H 0.07 1.66 7.90 -51.93 -0.41 1.25 16 41 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 42 H 0.03 0.60 7.58 -51.93 -0.39 0.21 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.03 0.60 5.79 -51.93 -0.30 0.30 16 45 H 0.08 1.99 3.79 -51.93 -0.20 1.79 16 46 H 0.05 0.99 7.73 -51.93 -0.40 0.59 16 47 H 0.10 1.96 3.72 -51.93 -0.19 1.77 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -36.83 363.85 -7.06 -43.89 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.62 Total: 8.86 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -2.18 Total: 8.53 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: 0.18 Total: -64.95 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.58 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.09 Total: 18.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.83 -7.06 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982007107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.525 kcal (2) G-P(sol) polarization free energy of solvation -36.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds