Wall clock time and date at job start Tue Mar 31 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34490 * 126.83347 * 2 1 4 4 N 1.36443 * 108.85241 * 180.25116 * 3 2 1 5 5 H 0.96996 * 124.84529 * 179.76912 * 4 3 2 6 6 C 1.34655 * 110.30025 * 359.75246 * 4 3 2 7 7 C 1.50700 * 125.80453 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46949 * 267.71488 * 7 6 4 9 9 N 1.34776 * 119.99551 * 185.24766 * 8 7 6 10 10 O 1.21271 * 120.00452 * 5.24790 * 8 7 6 11 11 C 1.36772 * 108.39686 * 359.97438 * 6 4 3 12 12 C 1.47266 * 126.93966 * 179.97438 * 11 6 4 13 13 O 1.21633 * 119.99890 * 90.77642 * 12 11 6 14 14 N 1.34776 * 120.00058 * 270.77369 * 12 11 6 15 15 C 1.48216 * 119.96855 * 175.90596 * 14 12 11 16 16 C 1.47137 * 110.34329 * 102.50805 * 15 14 12 17 17 C 1.53241 * 111.81485 * 58.22420 * 16 15 14 18 18 N 1.43457 * 108.26462 * 281.67720 * 17 16 15 19 19 C 1.36941 * 118.94164 * 273.78225 * 18 17 16 20 20 H 1.08000 * 119.99493 * 32.80338 * 19 18 17 21 21 C 1.38810 * 120.00047 * 212.80963 * 19 18 17 22 22 N 1.31622 * 119.99766 * 197.00132 * 21 19 18 23 23 Si 1.86799 * 119.99863 * 16.99977 * 21 19 18 24 24 H 1.48501 * 109.46915 * 272.77344 * 23 21 19 25 25 H 1.48507 * 109.47069 * 152.77755 * 23 21 19 26 26 H 1.48491 * 109.47447 * 32.77705 * 23 21 19 27 27 C 1.48860 * 122.12141 * 93.50379 * 18 17 16 28 28 C 1.43621 * 119.97319 * 355.92378 * 14 12 11 29 29 H 1.08991 * 109.47380 * 275.88079 * 1 2 3 30 30 H 1.09003 * 109.46789 * 35.88169 * 1 2 3 31 31 H 1.09001 * 109.47112 * 155.87911 * 1 2 3 32 32 H 1.08001 * 125.57168 * 0.03939 * 3 2 1 33 33 H 1.09005 * 109.46811 * 27.70644 * 7 6 4 34 34 H 1.09000 * 109.47455 * 147.70928 * 7 6 4 35 35 H 0.96996 * 120.00742 * 359.97438 * 9 8 7 36 36 H 0.97005 * 119.99651 * 179.97438 * 9 8 7 37 37 H 1.09000 * 109.31887 * 222.77227 * 15 14 12 38 38 H 1.08996 * 109.32312 * 342.41396 * 15 14 12 39 39 H 1.09009 * 109.00407 * 178.89904 * 16 15 14 40 40 H 1.08992 * 109.00930 * 297.75905 * 16 15 14 41 41 H 1.09001 * 109.48759 * 162.03666 * 17 16 15 42 42 H 1.09004 * 109.73485 * 41.46303 * 17 16 15 43 43 H 0.97002 * 119.99529 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.48356 * 80.87632 * 27 18 17 45 45 H 1.09000 * 109.47823 * 200.91506 * 27 18 17 46 46 H 1.08991 * 108.87498 * 149.86560 * 28 14 12 47 47 H 1.09006 * 108.87217 * 31.42787 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0057 5 1 4.3839 1.2413 -0.0100 6 6 3.6656 -0.6902 -0.0039 7 6 4.9225 -1.5216 -0.0082 8 6 5.3039 -1.8481 -1.4292 9 7 6.3398 -2.6742 -1.6759 10 8 4.6788 -1.3675 -2.3506 11 6 2.3863 -1.1740 0.0036 12 6 1.9749 -2.5880 0.0073 13 8 1.7970 -3.1668 1.0622 14 7 1.7954 -3.2408 -1.1581 15 6 1.4702 -4.6868 -1.1543 16 6 0.0363 -4.8892 -1.4149 17 6 -0.3907 -4.2796 -2.7544 18 7 -0.5314 -2.8627 -2.5791 19 6 -1.7241 -2.3664 -2.1248 20 1 -2.3208 -2.9432 -1.4337 21 6 -2.1661 -1.1221 -2.5526 22 7 -3.1141 -0.4962 -1.8878 23 14 -1.4155 -0.3359 -4.0718 24 1 -0.2082 0.4369 -3.6839 25 1 -2.4065 0.5756 -4.6984 26 1 -1.0352 -1.3949 -5.0407 27 6 0.5794 -1.9151 -2.8694 28 6 1.9199 -2.5346 -2.4025 29 1 -0.3633 0.1053 1.0222 30 1 -0.3633 0.8327 -0.6024 31 1 -0.3633 -0.9379 -0.4200 32 1 1.9868 2.1059 0.0006 33 1 5.7296 -0.9625 0.4652 34 1 4.7487 -2.4459 0.5429 35 1 6.8401 -3.0583 -0.9390 36 1 6.5851 -2.8846 -2.5905 37 1 2.0517 -5.1892 -1.9273 38 1 1.7207 -5.1103 -0.1818 39 1 -0.1749 -5.9586 -1.4268 40 1 -0.5392 -4.4230 -0.6153 41 1 -1.3439 -4.7094 -3.0622 42 1 0.3677 -4.4840 -3.5103 43 1 -3.4227 0.3736 -2.1865 44 1 0.6219 -1.7223 -3.9413 45 1 0.4069 -0.9792 -2.3380 46 1 2.2736 -3.2266 -3.1667 47 1 2.6542 -1.7378 -2.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982007107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:57 Heat of formation + Delta-G solvation = -22.280032 kcal Electronic energy + Delta-G solvation = -32011.792840 eV Core-core repulsion = 28002.091633 eV Total energy + Delta-G solvation = -4009.701207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42626 -40.69231 -40.12228 -38.57438 -35.90025 -34.65355 -34.45228 -33.59983 -33.32501 -32.34754 -29.64033 -29.02838 -27.41369 -26.83068 -25.10600 -24.62245 -22.33274 -21.87094 -21.46878 -20.28996 -19.43611 -18.90561 -18.44822 -17.96225 -17.62616 -17.51793 -17.24981 -16.94410 -16.28751 -15.91350 -15.54850 -15.47865 -15.24084 -14.98621 -14.53654 -14.48767 -14.41640 -14.13126 -14.07722 -13.86238 -13.68249 -13.49319 -13.36313 -13.14378 -12.98009 -12.75059 -12.56176 -12.27056 -12.12157 -11.91132 -11.77324 -11.53032 -11.50698 -11.03589 -10.88395 -10.60725 -10.53214 -9.53393 -9.37932 -9.01045 -8.68241 -8.07320 -5.44079 1.12640 1.34142 1.39825 1.47980 1.62034 1.66607 1.68814 2.24214 2.44057 2.47414 2.80843 3.15220 3.48590 3.57635 3.83835 4.07867 4.14179 4.16808 4.21946 4.25433 4.31091 4.41541 4.45232 4.52726 4.60115 4.64048 4.73654 4.81715 4.85056 4.92249 4.96778 5.03046 5.05952 5.07607 5.22734 5.30161 5.46284 5.52463 5.79024 5.89022 5.99433 6.01191 6.06300 6.24749 6.50673 6.56866 6.77516 7.09015 7.30538 7.42420 7.75586 8.13330 9.12256 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012119 B = 0.006049 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.799091 B = 4627.637789 C = 5306.006515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.158 4.158 3 C 0.000 4.000 4 N -0.524 5.524 5 H 0.433 0.567 6 C 0.088 3.912 7 C -0.077 4.077 8 C 0.515 3.485 9 N -0.834 5.834 10 O -0.567 6.567 11 C -0.232 4.232 12 C 0.596 3.404 13 O -0.591 6.591 14 N -0.575 5.575 15 C 0.124 3.876 16 C -0.155 4.155 17 C 0.156 3.844 18 N -0.608 5.608 19 C -0.243 4.243 20 H 0.036 0.964 21 C -0.004 4.004 22 N -0.946 5.946 23 Si 0.931 3.069 24 H -0.276 1.276 25 H -0.313 1.313 26 H -0.270 1.270 27 C 0.104 3.896 28 C 0.104 3.896 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.195 0.805 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.418 0.582 36 H 0.409 0.591 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.022 0.978 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.258 0.742 44 H 0.024 0.976 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.777 -2.258 1.305 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.164 4.164 3 C -0.130 4.130 4 N -0.120 5.120 5 H 0.274 0.726 6 C -0.030 4.030 7 C -0.117 4.117 8 C 0.299 3.701 9 N -0.399 5.399 10 O -0.446 6.446 11 C -0.242 4.242 12 C 0.386 3.614 13 O -0.473 6.473 14 N -0.305 5.305 15 C 0.003 3.997 16 C -0.195 4.195 17 C 0.030 3.970 18 N -0.332 5.332 19 C -0.373 4.373 20 H 0.054 0.946 21 C -0.200 4.200 22 N -0.591 5.591 23 Si 0.761 3.239 24 H -0.202 1.202 25 H -0.242 1.242 26 H -0.195 1.195 27 C -0.021 4.021 28 C -0.022 4.022 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.212 0.788 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.249 0.751 36 H 0.240 0.760 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 25.238 -1.979 1.360 25.352 hybrid contribution -0.365 0.663 -0.597 0.964 sum 24.872 -1.315 0.763 24.919 Atomic orbital electron populations 1.20000 0.90645 1.02452 0.99909 1.20589 0.94679 0.92021 1.09102 1.21718 0.82347 0.99339 1.09559 1.41092 1.08104 1.05297 1.57508 0.72634 1.19396 0.93681 0.84162 1.05733 1.20349 0.94499 1.01488 0.95405 1.20585 0.80003 0.78539 0.90984 1.43627 1.33429 1.49337 1.13478 1.90743 1.52972 1.53592 1.47323 1.19991 0.94055 0.91877 1.18298 1.17850 0.75052 0.85647 0.82884 1.90669 1.54316 1.69832 1.32508 1.47422 1.67424 1.10057 1.05548 1.20752 0.96075 0.79837 1.03039 1.21556 0.96742 1.01297 0.99941 1.20434 0.99322 0.82799 0.94433 1.44003 1.09197 1.02477 1.77515 1.18567 0.96881 1.02204 1.19647 0.94643 1.25699 0.96769 0.97893 0.99597 1.69949 1.33315 1.15150 1.40665 0.86185 0.76803 0.78003 0.82870 1.20244 1.24203 1.19513 1.22592 0.88607 0.94241 0.96693 1.21772 0.96866 0.98120 0.85434 0.93482 0.93313 0.92587 0.78771 0.83096 0.86459 0.75067 0.75981 0.88225 0.90610 0.89069 0.95908 0.93602 0.91753 0.93244 0.95868 0.92588 0.90319 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.38 9.43 71.24 0.67 -2.70 16 2 C -0.16 -6.13 5.98 -18.51 -0.11 -6.24 16 3 C 0.00 -0.01 11.82 83.12 0.98 0.97 16 4 N -0.52 -11.58 5.90 -182.72 -1.08 -12.66 16 5 H 0.43 5.57 8.96 -92.71 -0.83 4.74 16 6 C 0.09 2.33 5.45 41.78 0.23 2.55 16 7 C -0.08 -1.26 6.03 29.10 0.18 -1.08 16 8 C 0.51 9.26 8.09 87.66 0.71 9.97 16 9 N -0.83 -7.24 8.87 -173.54 -1.54 -8.78 16 10 O -0.57 -15.71 14.25 -3.00 -0.04 -15.75 16 11 C -0.23 -8.59 4.22 -19.04 -0.08 -8.67 16 12 C 0.60 24.66 7.07 86.62 0.61 25.27 16 13 O -0.59 -27.96 16.57 -4.14 -0.07 -28.03 16 14 N -0.58 -21.59 2.46 -835.27 -2.05 -23.64 16 15 C 0.12 4.05 5.67 84.23 0.48 4.53 16 16 C -0.15 -5.69 5.63 28.85 0.16 -5.52 16 17 C 0.16 6.27 5.59 87.02 0.49 6.75 16 18 N -0.61 -29.68 2.23 -699.18 -1.56 -31.24 16 19 C -0.24 -14.18 8.43 84.03 0.71 -13.47 16 20 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 21 C 0.00 -0.21 4.96 84.86 0.42 0.21 16 22 N -0.95 -59.67 13.97 21.65 0.30 -59.37 16 23 Si 0.93 48.38 24.05 68.60 1.65 50.03 16 24 H -0.28 -13.87 6.66 99.48 0.66 -13.20 16 25 H -0.31 -16.46 7.11 99.48 0.71 -15.75 16 26 H -0.27 -13.60 6.77 99.48 0.67 -12.93 16 27 C 0.10 4.75 4.42 86.56 0.38 5.13 16 28 C 0.10 3.87 5.12 87.55 0.45 4.32 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 3.08 5.66 -2.39 -0.01 3.07 16 32 H 0.20 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.15 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.12 1.95 7.98 -2.39 -0.02 1.93 16 35 H 0.42 0.78 8.83 -92.71 -0.82 -0.03 16 36 H 0.41 3.16 8.93 -92.70 -0.83 2.33 16 37 H 0.10 2.48 8.05 -2.39 -0.02 2.46 16 38 H 0.08 2.53 7.17 -2.39 -0.02 2.51 16 39 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.02 1.05 7.90 -2.39 -0.02 1.03 16 41 H 0.05 1.89 8.02 -2.39 -0.02 1.87 16 42 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 43 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.02 1.08 5.79 -2.39 -0.01 1.07 16 45 H 0.06 2.85 3.79 -2.39 -0.01 2.84 16 46 H 0.08 2.57 7.73 -2.39 -0.02 2.55 16 47 H 0.10 3.93 3.72 -2.38 -0.01 3.92 16 Total: -1.00 -87.71 363.85 0.38 -87.34 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -1.51 Total: 20.06 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: 6.27 Total: 22.04 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -5.93 Total: -135.69 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.11 Total: -43.78 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.65 Total: 50.03 kcal Total: -87.71 0.38 -87.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982007107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.056 kcal (2) G-P(sol) polarization free energy of solvation -87.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds