Wall clock time and date at job start Tue Mar 31 2020 19:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33223 * 126.01676 * 2 1 4 4 C 1.31534 * 109.76401 * 180.25971 * 3 2 1 5 5 O 1.35199 * 125.49488 * 179.78362 * 4 3 2 6 6 N 1.34945 * 109.01110 * 359.76056 * 4 3 2 7 7 H 0.97000 * 126.54556 * 180.02562 * 6 4 3 8 8 C 1.36714 * 126.01987 * 179.85130 * 2 1 3 9 9 C 1.46372 * 126.82932 * 0.02562 * 8 2 1 10 10 O 1.21737 * 119.99797 * 359.70754 * 9 8 2 11 11 N 1.34777 * 120.00658 * 179.70844 * 9 8 2 12 12 C 1.47175 * 125.64367 * 359.97438 * 11 9 8 13 13 C 1.55350 * 106.96190 * 180.99813 * 12 11 9 14 14 H 1.08999 * 112.90867 * 214.96442 * 13 12 11 15 15 C 1.53008 * 106.41475 * 91.60661 * 13 12 11 16 16 C 1.52591 * 111.05126 * 197.20959 * 15 13 12 17 17 C 1.51916 * 108.63887 * 62.02113 * 16 15 13 18 18 C 1.52819 * 108.83217 * 296.45328 * 17 16 15 19 19 H 1.09003 * 108.96645 * 178.71977 * 18 17 16 20 20 N 1.46496 * 109.03143 * 297.60117 * 18 17 16 21 21 C 1.36945 * 119.99718 * 277.23752 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.50734 * 111.74388 * 58.18418 * 18 17 16 30 30 H 1.08997 * 109.27350 * 186.93496 * 29 18 17 31 31 C 1.47288 * 125.95768 * 180.71856 * 11 9 8 32 32 H 1.08998 * 109.46743 * 270.14674 * 1 2 3 33 33 H 1.08996 * 109.47502 * 30.15029 * 1 2 3 34 34 H 1.09003 * 109.46599 * 150.14943 * 1 2 3 35 35 H 0.96699 * 114.00250 * 269.97297 * 5 4 3 36 36 H 1.09000 * 109.96058 * 61.62057 * 12 11 9 37 37 H 1.09003 * 109.96501 * 300.37340 * 12 11 9 38 38 H 1.08999 * 109.16066 * 317.60952 * 15 13 12 39 39 H 1.08994 * 109.16684 * 76.85492 * 15 13 12 40 40 H 1.08995 * 109.67990 * 182.08489 * 16 15 13 41 41 H 1.09005 * 109.67566 * 302.62051 * 16 15 13 42 42 H 1.09001 * 109.97243 * 176.21341 * 17 16 15 43 43 H 1.08997 * 108.76214 * 55.98106 * 17 16 15 44 44 H 0.96996 * 120.00499 * 97.23482 * 20 18 17 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 46 46 H 1.08999 * 110.84594 * 84.74500 * 31 11 9 47 47 H 1.08992 * 109.92273 * 322.20447 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0056 5 8 4.6149 1.5465 -0.0114 6 7 3.6181 -0.6384 -0.0041 7 1 4.4243 -1.1779 -0.0069 8 6 2.3110 -1.1058 0.0029 9 6 1.8794 -2.5044 0.0060 10 8 0.6925 -2.7751 0.0116 11 7 2.7958 -3.4926 0.0027 12 6 4.2560 -3.3082 -0.0046 13 6 4.8916 -4.7254 -0.0319 14 1 5.8200 -4.7850 0.5361 15 6 5.0958 -5.0793 -1.5064 16 6 5.3114 -6.5793 -1.6853 17 6 4.0667 -7.3089 -1.2095 18 6 3.8861 -7.0525 0.2861 19 1 2.9809 -7.5563 0.6251 20 7 5.0368 -7.6019 1.0073 21 6 5.0742 -8.9337 1.3239 22 1 4.2551 -9.5788 1.0423 23 6 6.1647 -9.4544 2.0068 24 7 7.1626 -8.6680 2.3506 25 14 6.2153 -11.2709 2.4393 26 1 7.4772 -11.5728 3.1616 27 1 5.0564 -11.6061 3.3052 28 1 6.1529 -12.0781 1.1944 29 6 3.7724 -5.5806 0.5907 30 1 3.7694 -5.4359 1.6710 31 6 2.5097 -4.9374 -0.0098 32 1 -0.3633 0.0026 1.0277 33 1 -0.3634 0.8886 -0.5161 34 1 -0.3633 -0.8914 -0.5115 35 1 4.9198 1.7889 -0.8965 36 1 4.5684 -2.7774 0.8947 37 1 4.5560 -2.7486 -0.8906 38 1 4.2158 -4.7744 -2.0727 39 1 5.9675 -4.5457 -1.8852 40 1 5.4910 -6.8015 -2.7372 41 1 6.1666 -6.9007 -1.0907 42 1 4.1706 -8.3788 -1.3897 43 1 3.2051 -6.9250 -1.7557 44 1 5.7722 -7.0224 1.2606 45 1 7.9245 -9.0318 2.8281 46 1 2.3476 -5.2919 -1.0277 47 1 1.6404 -5.1492 0.6125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992719836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:30 Heat of formation + Delta-G solvation = 1.769400 kcal Electronic energy + Delta-G solvation = -29776.149475 eV Core-core repulsion = 25767.491130 eV Total energy + Delta-G solvation = -4008.658345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62680 -40.63766 -38.71914 -37.70705 -35.91883 -33.78998 -33.37165 -31.65610 -31.20272 -30.59407 -29.44033 -27.41184 -26.73581 -24.86207 -23.44867 -22.50039 -22.06396 -21.62765 -20.95744 -20.15308 -18.91763 -18.26380 -17.51814 -17.29249 -16.67854 -16.40346 -15.81329 -15.75225 -15.05978 -14.67184 -14.40021 -14.13406 -13.89751 -13.75616 -13.50891 -13.40014 -13.05655 -12.93321 -12.84576 -12.64883 -12.58117 -12.27151 -11.80505 -11.80015 -11.47415 -11.36222 -11.08127 -10.88491 -10.80342 -10.61791 -10.38870 -10.26151 -10.22401 -10.07055 -9.87368 -9.69707 -9.59867 -8.94942 -8.92352 -8.57007 -7.02956 -5.83477 -3.11880 0.87370 2.04760 2.35851 2.74934 3.06736 3.39753 3.45104 3.45135 3.50163 4.20120 4.33437 4.46281 4.55835 4.67291 4.76328 4.82326 5.03250 5.08588 5.24014 5.29669 5.40663 5.50788 5.61015 5.62249 5.63739 5.66705 5.72378 5.75758 5.79792 5.83533 5.90308 5.98696 6.07870 6.19548 6.23402 6.27231 6.28240 6.31879 6.42636 6.70815 6.76268 6.92833 7.00809 7.15916 7.25793 7.48571 7.64611 7.91234 8.35175 9.46994 10.02508 10.37723 11.39034 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.002731 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.671243 B =10251.246475 C =10648.665743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.113 3.887 3 N -0.489 5.489 4 C 0.408 3.592 5 O -0.441 6.441 6 N -0.558 5.558 7 H 0.424 0.576 8 C -0.077 4.077 9 C 0.610 3.390 10 O -0.522 6.522 11 N -0.612 5.612 12 C 0.086 3.914 13 C -0.083 4.083 14 H 0.104 0.896 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.134 4.134 18 C 0.190 3.810 19 H 0.049 0.951 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.286 1.286 29 C -0.095 4.095 30 H 0.082 0.918 31 C 0.116 3.884 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.407 0.593 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.599 17.187 -9.131 20.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 N -0.220 5.220 4 C 0.106 3.894 5 O -0.242 6.242 6 N -0.180 5.180 7 H 0.268 0.732 8 C -0.192 4.192 9 C 0.399 3.601 10 O -0.399 6.399 11 N -0.346 5.346 12 C -0.037 4.037 13 C -0.102 4.102 14 H 0.122 0.878 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.174 4.174 18 C 0.080 3.920 19 H 0.067 0.933 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.213 1.213 28 H -0.213 1.213 29 C -0.115 4.115 30 H 0.100 0.900 31 C -0.006 4.006 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.265 0.735 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.539 17.756 -8.466 20.730 hybrid contribution 1.636 -1.656 -0.114 2.331 sum -4.903 16.100 -8.580 18.891 Atomic orbital electron populations 1.20348 0.85849 1.03919 1.03454 1.20945 0.96899 0.85769 0.98607 1.70274 0.98611 1.30407 1.22730 1.20199 0.87437 0.78873 1.02873 1.84843 1.43327 1.61597 1.34432 1.44326 1.09224 1.08010 1.56452 0.73159 1.20760 0.82974 0.95079 1.20373 1.16261 0.84995 0.81783 0.77055 1.90847 1.15249 1.82571 1.51212 1.48356 1.06153 1.07248 1.72828 1.22661 0.80757 1.00119 1.00188 1.22202 0.99158 0.91007 0.97800 0.87754 1.21545 1.00728 0.97971 0.94427 1.21135 1.00442 0.93405 1.00054 1.21948 0.96396 1.00588 0.98492 1.19474 0.92540 0.88995 0.91040 0.93299 1.42370 1.19526 1.07530 1.66657 1.19177 1.02647 0.85340 1.29699 0.91225 1.24703 0.96962 0.97776 1.01337 1.69636 1.09199 1.34281 1.45104 0.86297 0.76772 0.85224 0.78067 1.21768 1.21291 1.21314 1.21793 0.92555 0.96429 1.00730 0.89987 1.22185 0.98907 0.77713 1.01829 0.90373 0.90831 0.88886 0.73514 0.91680 0.91666 0.92613 0.92562 0.93259 0.90190 0.91641 0.93880 0.78289 0.93492 0.90591 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.87 36.01 0.36 -0.47 16 2 C 0.11 1.41 7.14 -82.54 -0.59 0.82 16 3 N -0.49 -6.15 11.22 -10.83 -0.12 -6.27 16 4 C 0.41 4.23 9.43 -89.59 -0.84 3.38 16 5 O -0.44 -3.32 13.62 -17.29 -0.24 -3.55 16 6 N -0.56 -5.43 5.71 -10.91 -0.06 -5.49 16 7 H 0.42 3.22 5.14 -40.82 -0.21 3.01 16 8 C -0.08 -0.94 6.89 -81.98 -0.57 -1.51 16 9 C 0.61 8.34 7.82 -12.99 -0.10 8.23 16 10 O -0.52 -8.33 15.07 5.16 0.08 -8.26 16 11 N -0.61 -7.60 3.33 -172.14 -0.57 -8.17 16 12 C 0.09 0.88 4.41 -2.43 -0.01 0.87 16 13 C -0.08 -1.02 3.31 -88.85 -0.29 -1.31 16 14 H 0.10 1.37 8.00 -51.93 -0.42 0.95 16 15 C -0.11 -1.30 4.61 -26.94 -0.12 -1.43 16 16 C -0.11 -1.67 5.82 -27.49 -0.16 -1.83 16 17 C -0.13 -2.13 5.34 -27.38 -0.15 -2.28 16 18 C 0.19 3.33 2.52 -69.16 -0.17 3.15 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.14 4.24 -54.63 -0.23 -16.38 16 21 C -0.24 -6.15 9.89 -15.06 -0.15 -6.30 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -26.74 13.06 55.49 0.72 -26.01 16 25 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C -0.10 -1.38 2.34 -90.76 -0.21 -1.59 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 31 C 0.12 1.53 5.81 -3.14 -0.02 1.51 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.05 6.47 -51.93 -0.34 0.71 16 35 H 0.41 0.81 9.06 45.56 0.41 1.22 16 36 H 0.07 0.61 7.25 -51.93 -0.38 0.23 16 37 H 0.07 0.54 6.72 -51.93 -0.35 0.19 16 38 H 0.06 0.64 7.08 -51.93 -0.37 0.28 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.44 7.45 -51.93 -0.39 1.05 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.60 6.79 -51.93 -0.35 0.25 16 44 H 0.38 9.10 7.38 -40.82 -0.30 8.80 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.08 0.98 6.07 -51.93 -0.32 0.66 16 47 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -32.21 366.33 -8.97 -41.18 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -5.92 Total: 9.98 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.13 Total: 0.84 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.26 Total: -62.32 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.16 Total: -11.81 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.21 -8.97 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.951 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds