Wall clock time and date at job start Tue Mar 31 2020 19:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33223 * 126.01676 * 2 1 4 4 C 1.31534 * 109.76401 * 180.25971 * 3 2 1 5 5 O 1.35199 * 125.49488 * 179.78362 * 4 3 2 6 6 N 1.34945 * 109.01110 * 359.76056 * 4 3 2 7 7 H 0.97000 * 126.54556 * 180.02562 * 6 4 3 8 8 C 1.36714 * 126.01987 * 179.85130 * 2 1 3 9 9 C 1.46372 * 126.82932 * 0.02562 * 8 2 1 10 10 O 1.21737 * 119.99797 * 359.70754 * 9 8 2 11 11 N 1.34777 * 120.00658 * 179.70844 * 9 8 2 12 12 C 1.47175 * 125.64367 * 359.97438 * 11 9 8 13 13 C 1.55350 * 106.96190 * 180.99813 * 12 11 9 14 14 H 1.08999 * 112.90867 * 214.96442 * 13 12 11 15 15 C 1.53008 * 106.41475 * 91.60661 * 13 12 11 16 16 C 1.52591 * 111.05126 * 197.20959 * 15 13 12 17 17 C 1.51916 * 108.63887 * 62.02113 * 16 15 13 18 18 C 1.52819 * 108.83217 * 296.45328 * 17 16 15 19 19 H 1.09003 * 108.96645 * 178.71977 * 18 17 16 20 20 N 1.46496 * 109.03143 * 297.60117 * 18 17 16 21 21 C 1.36945 * 119.99718 * 277.23752 * 20 18 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.50734 * 111.74388 * 58.18418 * 18 17 16 30 30 H 1.08997 * 109.27350 * 186.93496 * 29 18 17 31 31 C 1.47288 * 125.95768 * 180.71856 * 11 9 8 32 32 H 1.08998 * 109.46743 * 270.14674 * 1 2 3 33 33 H 1.08996 * 109.47502 * 30.15029 * 1 2 3 34 34 H 1.09003 * 109.46599 * 150.14943 * 1 2 3 35 35 H 0.96699 * 114.00250 * 269.97297 * 5 4 3 36 36 H 1.09000 * 109.96058 * 61.62057 * 12 11 9 37 37 H 1.09003 * 109.96501 * 300.37340 * 12 11 9 38 38 H 1.08999 * 109.16066 * 317.60952 * 15 13 12 39 39 H 1.08994 * 109.16684 * 76.85492 * 15 13 12 40 40 H 1.08995 * 109.67990 * 182.08489 * 16 15 13 41 41 H 1.09005 * 109.67566 * 302.62051 * 16 15 13 42 42 H 1.09001 * 109.97243 * 176.21341 * 17 16 15 43 43 H 1.08997 * 108.76214 * 55.98106 * 17 16 15 44 44 H 0.96996 * 120.00499 * 97.23482 * 20 18 17 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 46 46 H 1.08999 * 110.84594 * 84.74500 * 31 11 9 47 47 H 1.08992 * 109.92273 * 322.20447 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 -0.0056 5 8 4.6149 1.5465 -0.0114 6 7 3.6181 -0.6384 -0.0041 7 1 4.4243 -1.1779 -0.0069 8 6 2.3110 -1.1058 0.0029 9 6 1.8794 -2.5044 0.0060 10 8 0.6925 -2.7751 0.0116 11 7 2.7958 -3.4926 0.0027 12 6 4.2560 -3.3082 -0.0046 13 6 4.8916 -4.7254 -0.0319 14 1 5.8200 -4.7850 0.5361 15 6 5.0958 -5.0793 -1.5064 16 6 5.3114 -6.5793 -1.6853 17 6 4.0667 -7.3089 -1.2095 18 6 3.8861 -7.0525 0.2861 19 1 2.9809 -7.5563 0.6251 20 7 5.0368 -7.6019 1.0073 21 6 5.0742 -8.9337 1.3239 22 1 4.2551 -9.5788 1.0423 23 6 6.1647 -9.4544 2.0068 24 7 7.1626 -8.6680 2.3506 25 14 6.2153 -11.2709 2.4393 26 1 7.4772 -11.5728 3.1616 27 1 5.0564 -11.6061 3.3052 28 1 6.1529 -12.0781 1.1944 29 6 3.7724 -5.5806 0.5907 30 1 3.7694 -5.4359 1.6710 31 6 2.5097 -4.9374 -0.0098 32 1 -0.3633 0.0026 1.0277 33 1 -0.3634 0.8886 -0.5161 34 1 -0.3633 -0.8914 -0.5115 35 1 4.9198 1.7889 -0.8965 36 1 4.5684 -2.7774 0.8947 37 1 4.5560 -2.7486 -0.8906 38 1 4.2158 -4.7744 -2.0727 39 1 5.9675 -4.5457 -1.8852 40 1 5.4910 -6.8015 -2.7372 41 1 6.1666 -6.9007 -1.0907 42 1 4.1706 -8.3788 -1.3897 43 1 3.2051 -6.9250 -1.7557 44 1 5.7722 -7.0224 1.2606 45 1 7.9245 -9.0318 2.8281 46 1 2.3476 -5.2919 -1.0277 47 1 1.6404 -5.1492 0.6125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992719836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:29 Heat of formation + Delta-G solvation = -23.331214 kcal Electronic energy + Delta-G solvation = -29777.237919 eV Core-core repulsion = 25767.491130 eV Total energy + Delta-G solvation = -4009.746789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46186 -41.72245 -39.79836 -38.38607 -37.20273 -35.24078 -34.38567 -33.17454 -32.22417 -31.61312 -30.90893 -28.38574 -27.91575 -26.20197 -24.91097 -23.51323 -23.22036 -22.59946 -22.07374 -20.97009 -19.74441 -19.39216 -19.18967 -18.52013 -17.56811 -17.41390 -16.84332 -16.73442 -16.44536 -16.07644 -15.48327 -15.32417 -15.22402 -15.13256 -14.63120 -14.44531 -14.18085 -14.13546 -13.78873 -13.61739 -13.36357 -13.29315 -13.04483 -12.99096 -12.79801 -12.69642 -12.63870 -12.45994 -12.23870 -12.04966 -11.80946 -11.53983 -11.31138 -11.22934 -11.19318 -11.05344 -10.88498 -10.69534 -9.94394 -9.44913 -8.94586 -7.91289 -5.16961 0.01482 1.28164 1.48335 1.49357 1.50435 1.55169 1.78575 2.10153 2.57718 2.78148 3.25867 3.34580 3.42223 3.57518 3.70787 3.84812 3.98725 4.02191 4.16759 4.17610 4.25177 4.33716 4.43336 4.49252 4.54846 4.57904 4.67431 4.74494 4.79304 4.82775 4.88026 4.92237 4.96731 5.06471 5.10506 5.15127 5.23955 5.40033 5.43995 5.46701 5.54064 5.63055 5.72839 5.74468 6.25616 6.31978 6.59932 6.66156 6.89943 7.39233 8.15424 8.39498 9.31667 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.002731 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.671243 B =10251.246475 C =10648.665743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.104 3.896 3 N -0.518 5.518 4 C 0.424 3.576 5 O -0.441 6.441 6 N -0.546 5.546 7 H 0.434 0.566 8 C -0.091 4.091 9 C 0.610 3.390 10 O -0.553 6.553 11 N -0.611 5.611 12 C 0.091 3.909 13 C -0.081 4.081 14 H 0.095 0.905 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.188 3.812 19 H 0.035 0.965 20 N -0.727 5.727 21 C -0.231 4.231 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.962 3.038 26 H -0.298 1.298 27 H -0.283 1.283 28 H -0.281 1.281 29 C -0.089 4.089 30 H 0.062 0.938 31 C 0.124 3.876 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.433 0.567 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.375 0.625 45 H 0.249 0.751 46 H 0.086 0.914 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 18.864 -10.589 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.031 4.031 3 N -0.249 5.249 4 C 0.122 3.878 5 O -0.246 6.246 6 N -0.169 5.169 7 H 0.281 0.719 8 C -0.206 4.206 9 C 0.400 3.600 10 O -0.432 6.432 11 N -0.344 5.344 12 C -0.032 4.032 13 C -0.099 4.099 14 H 0.114 0.886 15 C -0.138 4.138 16 C -0.147 4.147 17 C -0.168 4.168 18 C 0.079 3.921 19 H 0.053 0.947 20 N -0.367 5.367 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.793 3.207 26 H -0.225 1.225 27 H -0.209 1.209 28 H -0.207 1.207 29 C -0.109 4.109 30 H 0.080 0.920 31 C 0.002 3.998 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.296 0.704 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.208 0.792 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.395 19.440 -9.973 22.765 hybrid contribution 1.578 -2.106 0.311 2.650 sum -4.817 17.333 -9.662 20.421 Atomic orbital electron populations 1.20344 0.85284 1.04084 1.03636 1.21229 0.97631 0.85999 0.98208 1.70278 0.99655 1.30737 1.24279 1.20266 0.87580 0.79250 1.00721 1.84816 1.42149 1.60839 1.36805 1.44165 1.08779 1.07906 1.56088 0.71928 1.20476 0.84001 0.94174 1.21941 1.16406 0.84658 0.82361 0.76565 1.90829 1.16517 1.83102 1.52713 1.48319 1.07041 1.06539 1.72470 1.22735 0.79088 0.98983 1.02373 1.22137 0.98023 0.91857 0.97926 0.88638 1.21503 1.02446 0.95826 0.94064 1.21074 0.98093 0.95434 1.00136 1.21821 0.98361 0.99429 0.97154 1.19629 0.90082 0.90774 0.91622 0.94715 1.42486 1.20670 1.06432 1.67130 1.19505 1.02027 0.86883 1.27943 0.91149 1.25371 0.97210 1.01249 1.02573 1.69772 1.09729 1.35561 1.46673 0.85374 0.76279 0.81324 0.77771 1.22456 1.20916 1.20715 1.21544 0.94722 0.94806 0.99860 0.91986 1.22006 0.97520 0.78427 1.01890 0.90156 0.89511 0.89785 0.70419 0.90432 0.88553 0.91201 0.90150 0.91754 0.93802 0.94169 0.91129 0.79214 0.94244 0.89621 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.87 71.24 0.70 -0.85 16 2 C 0.10 2.46 7.14 41.99 0.30 2.76 16 3 N -0.52 -11.99 11.22 -301.68 -3.39 -15.38 16 4 C 0.42 7.59 9.43 179.99 1.70 9.29 16 5 O -0.44 -5.13 13.62 -84.79 -1.16 -6.29 16 6 N -0.55 -9.01 5.71 -300.15 -1.71 -10.73 16 7 H 0.43 4.99 5.14 -92.71 -0.48 4.51 16 8 C -0.09 -2.05 6.89 39.80 0.27 -1.78 16 9 C 0.61 15.77 7.82 86.36 0.67 16.45 16 10 O -0.55 -17.35 15.07 -4.47 -0.07 -17.42 16 11 N -0.61 -13.93 3.33 -816.72 -2.72 -16.65 16 12 C 0.09 1.57 4.41 87.06 0.38 1.96 16 13 C -0.08 -1.83 3.31 -9.65 -0.03 -1.86 16 14 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 15 C -0.10 -2.11 4.61 30.46 0.14 -1.97 16 16 C -0.11 -3.08 5.82 30.10 0.18 -2.91 16 17 C -0.13 -3.97 5.34 30.18 0.16 -3.81 16 18 C 0.19 6.62 2.52 44.20 0.11 6.73 16 19 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 20 N -0.73 -33.34 4.24 -326.75 -1.38 -34.72 16 21 C -0.23 -12.19 9.89 84.03 0.83 -11.36 16 22 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -56.62 13.06 21.65 0.28 -56.33 16 25 Si 0.96 45.15 29.55 68.60 2.03 47.18 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 29 C -0.09 -2.54 2.34 -10.89 -0.03 -2.57 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 C 0.12 3.13 5.81 86.53 0.50 3.63 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.87 6.47 -2.39 -0.02 1.85 16 35 H 0.43 0.05 9.06 -74.06 -0.67 -0.62 16 36 H 0.08 1.21 7.25 -2.39 -0.02 1.19 16 37 H 0.10 1.14 6.72 -2.39 -0.02 1.12 16 38 H 0.07 1.32 7.08 -2.39 -0.02 1.30 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.57 7.45 -2.38 -0.02 1.55 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.81 6.79 -2.39 -0.02 1.80 16 44 H 0.38 18.32 7.38 -92.71 -0.68 17.64 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.09 2.01 6.07 -2.39 -0.01 2.00 16 47 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 Total: -1.00 -70.92 366.33 -2.54 -73.46 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -0.79 Total: 26.65 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.36 Total: 10.22 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -8.92 Total: -133.81 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.22 Total: -23.70 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -70.92 -2.54 -73.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.128 kcal (2) G-P(sol) polarization free energy of solvation -70.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds