Wall clock time and date at job start Tue Mar 31 2020 19:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33221 * 126.01908 * 2 1 4 4 C 1.31531 * 109.76101 * 179.73421 * 3 2 1 5 5 O 1.35211 * 125.49512 * 180.24225 * 4 3 2 6 6 N 1.34947 * 109.01563 * 0.38500 * 4 3 2 7 7 H 0.96999 * 126.54506 * 179.89150 * 6 4 3 8 8 C 1.36719 * 126.01724 * 179.97438 * 2 1 3 9 9 C 1.46378 * 126.82581 * 0.02562 * 8 2 1 10 10 O 1.21736 * 119.99972 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00164 * 180.02562 * 9 8 2 12 12 C 1.48245 * 125.78104 * 0.03177 * 11 9 8 13 13 C 1.52331 * 105.86713 * 176.81836 * 12 11 9 14 14 H 1.09007 * 109.88301 * 271.82979 * 13 12 11 15 15 C 1.51443 * 117.45108 * 145.30184 * 13 12 11 16 16 C 1.53836 * 107.04183 * 181.23536 * 15 13 12 17 17 C 1.52523 * 111.66354 * 57.19704 * 16 15 13 18 18 C 1.53816 * 111.70533 * 305.95775 * 17 16 15 19 19 H 1.08996 * 109.94705 * 176.91540 * 18 17 16 20 20 N 1.46497 * 109.94050 * 298.07245 * 18 17 16 21 21 C 1.36942 * 119.99909 * 208.80912 * 20 18 17 22 22 H 1.08002 * 120.00010 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00046 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47174 * 59.99812 * 25 23 21 27 27 H 1.48495 * 109.47431 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47006 * 299.99941 * 25 23 21 29 29 C 1.51618 * 107.01966 * 57.53459 * 18 17 16 30 30 H 1.09000 * 110.50289 * 55.19088 * 29 18 17 31 31 C 1.48655 * 125.78658 * 179.71524 * 11 9 8 32 32 H 1.09006 * 109.46759 * 270.03973 * 1 2 3 33 33 H 1.09002 * 109.47155 * 30.03404 * 1 2 3 34 34 H 1.09001 * 109.47510 * 150.03863 * 1 2 3 35 35 H 0.96701 * 113.99331 * 270.17103 * 5 4 3 36 36 H 1.09001 * 110.17377 * 295.91309 * 12 11 9 37 37 H 1.09000 * 110.17213 * 57.64526 * 12 11 9 38 38 H 1.09003 * 109.93796 * 300.61880 * 15 13 12 39 39 H 1.08999 * 109.93644 * 61.84986 * 15 13 12 40 40 H 1.08997 * 109.03856 * 177.75882 * 16 15 13 41 41 H 1.08998 * 109.04269 * 296.70611 * 16 15 13 42 42 H 1.08999 * 109.03507 * 66.53227 * 17 16 15 43 43 H 1.09006 * 109.03047 * 185.46101 * 17 16 15 44 44 H 0.97006 * 120.00265 * 28.81664 * 20 18 17 45 45 H 0.97000 * 119.99193 * 180.02562 * 24 23 21 46 46 H 1.08993 * 110.63081 * 274.10963 * 31 11 9 47 47 H 1.09005 * 110.62565 * 37.13605 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5531 0.7093 0.0057 5 8 4.6150 1.5463 0.0121 6 7 3.6181 -0.6386 0.0011 7 1 4.4242 -1.1780 0.0021 8 6 2.3110 -1.1058 0.0005 9 6 1.8791 -2.5045 0.0006 10 8 0.6922 -2.7751 -0.0003 11 7 2.7956 -3.4927 0.0016 12 6 4.2668 -3.3105 0.0034 13 6 4.8598 -4.7112 0.0854 14 1 4.9658 -5.0085 1.1287 15 6 6.1555 -4.9653 -0.6565 16 6 6.5163 -6.4449 -0.4398 17 6 5.3999 -7.3715 -0.9103 18 6 4.0519 -7.0129 -0.2620 19 1 3.2660 -7.6558 -0.6584 20 7 4.1393 -7.1695 1.1919 21 6 3.0208 -7.4887 1.9146 22 1 2.0743 -7.6254 1.4127 23 6 3.1035 -7.6366 3.2924 24 7 4.2571 -7.4704 3.9040 25 14 1.5779 -8.0727 4.2782 26 1 1.0411 -9.3754 3.8091 27 1 1.9301 -8.1724 5.7173 28 1 0.5497 -7.0176 4.0916 29 6 3.7623 -5.5663 -0.6117 30 1 3.7898 -5.4217 -1.6918 31 6 2.5025 -4.9500 0.0079 32 1 -0.3633 0.0007 1.0277 33 1 -0.3633 0.8897 -0.5144 34 1 -0.3634 -0.8903 -0.5132 35 1 4.9265 1.7930 -0.8695 36 1 4.5860 -2.8205 -0.9165 37 1 4.5715 -2.7209 0.8681 38 1 6.0199 -4.7676 -1.7198 39 1 6.9439 -4.3278 -0.2564 40 1 7.4261 -6.6740 -0.9946 41 1 6.6950 -6.6156 0.6218 42 1 5.3056 -7.2931 -1.9933 43 1 5.6566 -8.3983 -0.6494 44 1 4.9895 -7.0470 1.6428 45 1 4.3148 -7.5742 4.8667 46 1 2.3580 -5.3084 1.0270 47 1 1.6277 -5.1684 -0.6047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992719839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:33 Heat of formation + Delta-G solvation = 5.007379 kcal Electronic energy + Delta-G solvation = -30269.629874 eV Core-core repulsion = 26261.111938 eV Total energy + Delta-G solvation = -4008.517936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.44112 -40.27128 -38.55155 -37.56725 -35.71540 -33.77011 -33.42952 -31.51691 -31.02928 -30.33616 -29.01184 -27.19942 -27.08569 -24.72176 -23.46283 -22.62143 -21.58144 -20.95563 -20.61174 -19.97057 -18.92452 -18.69920 -17.44871 -17.17299 -16.53456 -15.94855 -15.92931 -15.18190 -14.86951 -14.65182 -14.45896 -14.09655 -13.82170 -13.72356 -13.33907 -13.11836 -12.88850 -12.68110 -12.60694 -12.43722 -12.35228 -12.17343 -11.94864 -11.70546 -11.50848 -11.25104 -10.89710 -10.82208 -10.53476 -10.47474 -10.43542 -10.22867 -10.19057 -10.02448 -9.81217 -9.60255 -9.48594 -8.97602 -8.68150 -8.31149 -7.06650 -5.85922 -3.14438 1.07244 2.21451 2.52823 3.01706 3.33209 3.41694 3.46445 3.48320 3.64910 4.37827 4.53425 4.56772 4.70655 4.87602 4.95871 5.02374 5.16430 5.20371 5.37363 5.46020 5.50000 5.56522 5.63601 5.70420 5.77758 5.80332 5.84449 5.86931 5.91882 5.96080 5.98898 6.12100 6.20365 6.25190 6.32529 6.37685 6.48080 6.50187 6.53086 6.64913 6.75113 6.76691 6.97339 7.31204 7.54234 7.63568 7.67842 8.20913 8.32811 9.45103 10.00322 10.35074 11.35975 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004006 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.712318 B = 6987.456085 C = 8305.915295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.107 3.893 3 N -0.489 5.489 4 C 0.401 3.599 5 O -0.441 6.441 6 N -0.557 5.557 7 H 0.423 0.577 8 C -0.070 4.070 9 C 0.605 3.395 10 O -0.525 6.525 11 N -0.614 5.614 12 C 0.103 3.897 13 C -0.106 4.106 14 H 0.108 0.892 15 C -0.098 4.098 16 C -0.114 4.114 17 C -0.123 4.123 18 C 0.188 3.812 19 H 0.057 0.943 20 N -0.716 5.716 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.007 4.007 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.284 1.284 29 C -0.118 4.118 30 H 0.067 0.933 31 C 0.119 3.881 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.405 0.595 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.107 0.893 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 11.739 -12.992 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 N -0.220 5.220 4 C 0.100 3.900 5 O -0.242 6.242 6 N -0.179 5.179 7 H 0.268 0.732 8 C -0.185 4.185 9 C 0.394 3.606 10 O -0.402 6.402 11 N -0.348 5.348 12 C -0.021 4.021 13 C -0.125 4.125 14 H 0.126 0.874 15 C -0.136 4.136 16 C -0.152 4.152 17 C -0.161 4.161 18 C 0.077 3.923 19 H 0.075 0.925 20 N -0.357 5.357 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.578 5.578 25 Si 0.732 3.268 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.211 1.211 29 C -0.141 4.141 30 H 0.085 0.915 31 C -0.001 4.001 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.125 0.875 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.380 12.405 -12.296 17.791 hybrid contribution 0.700 -0.948 0.366 1.234 sum 4.080 11.457 -11.930 17.036 Atomic orbital electron populations 1.20334 0.85913 1.03787 1.03434 1.20918 0.96872 0.85796 0.99139 1.70239 0.98609 1.30484 1.22668 1.20178 0.87418 0.78904 1.03514 1.84854 1.43342 1.61666 1.34331 1.44307 1.09283 1.07932 1.56380 0.73235 1.20912 0.82838 0.95372 1.19424 1.16282 0.85181 0.81761 0.77411 1.90836 1.15289 1.82528 1.51544 1.49141 1.05689 1.07766 1.72156 1.21869 0.80976 0.99717 0.99499 1.21859 0.95233 0.91911 1.03486 0.87390 1.21274 0.95997 0.97089 0.99270 1.21450 0.97732 0.93744 1.02236 1.21822 0.95695 0.99493 0.99100 1.19909 0.94571 0.91410 0.86445 0.92537 1.42445 1.09929 1.83373 0.99969 1.19174 0.88971 1.39934 0.89298 0.91081 1.24696 0.96685 1.02328 0.96650 1.69634 1.23286 1.55967 1.08941 0.86357 0.82649 0.78459 0.79334 1.21196 1.21758 1.21058 1.22908 0.93659 0.99682 0.97811 0.91496 1.22329 0.97429 0.76211 1.04141 0.90435 0.90989 0.88872 0.73798 0.92309 0.91975 0.92351 0.92272 0.92735 0.91305 0.92799 0.91728 0.78015 0.93432 0.87541 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.87 36.01 0.36 -0.63 16 2 C 0.11 1.57 7.14 -82.54 -0.59 0.98 16 3 N -0.49 -7.01 11.22 -10.83 -0.12 -7.14 16 4 C 0.40 4.85 9.43 -89.60 -0.84 4.01 16 5 O -0.44 -3.92 13.62 -17.33 -0.24 -4.15 16 6 N -0.56 -6.57 5.73 -10.91 -0.06 -6.64 16 7 H 0.42 4.08 5.15 -40.82 -0.21 3.87 16 8 C -0.07 -1.04 6.90 -81.98 -0.57 -1.60 16 9 C 0.61 10.24 7.82 -12.99 -0.10 10.13 16 10 O -0.52 -10.18 15.09 5.16 0.08 -10.10 16 11 N -0.61 -9.78 3.38 -172.35 -0.58 -10.36 16 12 C 0.10 1.31 4.82 -3.42 -0.02 1.29 16 13 C -0.11 -1.49 2.21 -90.35 -0.20 -1.69 16 14 H 0.11 1.93 6.60 -51.93 -0.34 1.59 16 15 C -0.10 -1.13 5.70 -27.08 -0.15 -1.29 16 16 C -0.11 -1.47 5.58 -26.54 -0.15 -1.62 16 17 C -0.12 -1.73 5.51 -26.55 -0.15 -1.87 16 18 C 0.19 3.21 3.00 -68.21 -0.20 3.00 16 19 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 20 N -0.72 -15.50 3.84 -53.69 -0.21 -15.70 16 21 C -0.24 -6.10 8.10 -15.06 -0.12 -6.22 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -26.37 13.06 55.49 0.72 -25.64 16 25 Si 0.90 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 C -0.12 -1.80 2.37 -89.76 -0.21 -2.01 16 30 H 0.07 0.92 8.01 -51.93 -0.42 0.51 16 31 C 0.12 2.09 6.44 -2.69 -0.02 2.07 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.26 6.46 -51.93 -0.34 0.93 16 35 H 0.40 1.28 9.06 45.56 0.41 1.69 16 36 H 0.06 0.60 7.37 -51.93 -0.38 0.22 16 37 H 0.06 0.76 6.99 -51.93 -0.36 0.40 16 38 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.04 7.03 -51.93 -0.36 0.68 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.38 8.93 5.98 -40.82 -0.24 8.68 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.11 2.27 6.15 -51.93 -0.32 1.95 16 47 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -31.69 365.14 -8.89 -40.58 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -5.90 Total: 12.59 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -3.06 Total: 4.28 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.25 Total: -65.48 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.16 Total: -14.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.69 -8.89 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.591 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds