Wall clock time and date at job start Tue Mar 31 2020 19:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33221 * 126.01908 * 2 1 4 4 C 1.31531 * 109.76101 * 179.73421 * 3 2 1 5 5 O 1.35211 * 125.49512 * 180.24225 * 4 3 2 6 6 N 1.34947 * 109.01563 * 0.38500 * 4 3 2 7 7 H 0.96999 * 126.54506 * 179.89150 * 6 4 3 8 8 C 1.36719 * 126.01724 * 179.97438 * 2 1 3 9 9 C 1.46378 * 126.82581 * 0.02562 * 8 2 1 10 10 O 1.21736 * 119.99972 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00164 * 180.02562 * 9 8 2 12 12 C 1.48245 * 125.78104 * 0.03177 * 11 9 8 13 13 C 1.52331 * 105.86713 * 176.81836 * 12 11 9 14 14 H 1.09007 * 109.88301 * 271.82979 * 13 12 11 15 15 C 1.51443 * 117.45108 * 145.30184 * 13 12 11 16 16 C 1.53836 * 107.04183 * 181.23536 * 15 13 12 17 17 C 1.52523 * 111.66354 * 57.19704 * 16 15 13 18 18 C 1.53816 * 111.70533 * 305.95775 * 17 16 15 19 19 H 1.08996 * 109.94705 * 176.91540 * 18 17 16 20 20 N 1.46497 * 109.94050 * 298.07245 * 18 17 16 21 21 C 1.36942 * 119.99909 * 208.80912 * 20 18 17 22 22 H 1.08002 * 120.00010 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00046 * 180.02562 * 21 20 18 24 24 N 1.31623 * 119.99616 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47174 * 59.99812 * 25 23 21 27 27 H 1.48495 * 109.47431 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47006 * 299.99941 * 25 23 21 29 29 C 1.51618 * 107.01966 * 57.53459 * 18 17 16 30 30 H 1.09000 * 110.50289 * 55.19088 * 29 18 17 31 31 C 1.48655 * 125.78658 * 179.71524 * 11 9 8 32 32 H 1.09006 * 109.46759 * 270.03973 * 1 2 3 33 33 H 1.09002 * 109.47155 * 30.03404 * 1 2 3 34 34 H 1.09001 * 109.47510 * 150.03863 * 1 2 3 35 35 H 0.96701 * 113.99331 * 270.17103 * 5 4 3 36 36 H 1.09001 * 110.17377 * 295.91309 * 12 11 9 37 37 H 1.09000 * 110.17213 * 57.64526 * 12 11 9 38 38 H 1.09003 * 109.93796 * 300.61880 * 15 13 12 39 39 H 1.08999 * 109.93644 * 61.84986 * 15 13 12 40 40 H 1.08997 * 109.03856 * 177.75882 * 16 15 13 41 41 H 1.08998 * 109.04269 * 296.70611 * 16 15 13 42 42 H 1.08999 * 109.03507 * 66.53227 * 17 16 15 43 43 H 1.09006 * 109.03047 * 185.46101 * 17 16 15 44 44 H 0.97006 * 120.00265 * 28.81664 * 20 18 17 45 45 H 0.97000 * 119.99193 * 180.02562 * 24 23 21 46 46 H 1.08993 * 110.63081 * 274.10963 * 31 11 9 47 47 H 1.09005 * 110.62565 * 37.13605 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5531 0.7093 0.0057 5 8 4.6150 1.5463 0.0121 6 7 3.6181 -0.6386 0.0011 7 1 4.4242 -1.1780 0.0021 8 6 2.3110 -1.1058 0.0005 9 6 1.8791 -2.5045 0.0006 10 8 0.6922 -2.7751 -0.0003 11 7 2.7956 -3.4927 0.0016 12 6 4.2668 -3.3105 0.0034 13 6 4.8598 -4.7112 0.0854 14 1 4.9658 -5.0085 1.1287 15 6 6.1555 -4.9653 -0.6565 16 6 6.5163 -6.4449 -0.4398 17 6 5.3999 -7.3715 -0.9103 18 6 4.0519 -7.0129 -0.2620 19 1 3.2660 -7.6558 -0.6584 20 7 4.1393 -7.1695 1.1919 21 6 3.0208 -7.4887 1.9146 22 1 2.0743 -7.6254 1.4127 23 6 3.1035 -7.6366 3.2924 24 7 4.2571 -7.4704 3.9040 25 14 1.5779 -8.0727 4.2782 26 1 1.0411 -9.3754 3.8091 27 1 1.9301 -8.1724 5.7173 28 1 0.5497 -7.0176 4.0916 29 6 3.7623 -5.5663 -0.6117 30 1 3.7898 -5.4217 -1.6918 31 6 2.5025 -4.9500 0.0079 32 1 -0.3633 0.0007 1.0277 33 1 -0.3633 0.8897 -0.5144 34 1 -0.3634 -0.8903 -0.5132 35 1 4.9265 1.7930 -0.8695 36 1 4.5860 -2.8205 -0.9165 37 1 4.5715 -2.7209 0.8681 38 1 6.0199 -4.7676 -1.7198 39 1 6.9439 -4.3278 -0.2564 40 1 7.4261 -6.6740 -0.9946 41 1 6.6950 -6.6156 0.6218 42 1 5.3056 -7.2931 -1.9933 43 1 5.6566 -8.3983 -0.6494 44 1 4.9895 -7.0470 1.6428 45 1 4.3148 -7.5742 4.8667 46 1 2.3580 -5.3084 1.0270 47 1 1.6277 -5.1684 -0.6047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992719839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:32 Heat of formation + Delta-G solvation = -20.056386 kcal Electronic energy + Delta-G solvation = -30270.716721 eV Core-core repulsion = 26261.111938 eV Total energy + Delta-G solvation = -4009.604782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45677 -41.50515 -39.79683 -38.39483 -37.04153 -35.39681 -34.45540 -33.10944 -32.16751 -31.47119 -30.56644 -28.41705 -28.21487 -26.05411 -25.17070 -23.65535 -22.68108 -22.11209 -21.80775 -20.97599 -20.19453 -19.71468 -19.12651 -18.46551 -17.56401 -17.23427 -17.01603 -16.55696 -16.31451 -15.87934 -15.65957 -15.59011 -15.20010 -14.86619 -14.56997 -14.36851 -14.17983 -13.84574 -13.66153 -13.63277 -13.35576 -13.28824 -13.19641 -12.99937 -12.83177 -12.74049 -12.66652 -12.42323 -12.17605 -11.82478 -11.68240 -11.56135 -11.34358 -11.22168 -11.13944 -11.06400 -10.88901 -10.60301 -9.92238 -9.45041 -8.94016 -7.92573 -5.16019 0.01593 1.27954 1.44264 1.46543 1.48825 1.50438 1.81921 2.11799 2.56090 2.75878 3.26212 3.40893 3.51064 3.67130 3.80819 3.90069 3.98881 4.01768 4.19717 4.26052 4.28955 4.40639 4.43116 4.60134 4.61436 4.66074 4.68520 4.78742 4.79874 4.88752 4.91569 4.94742 5.06112 5.08158 5.13126 5.23899 5.38185 5.40812 5.42393 5.49724 5.54808 5.58225 5.72601 5.74373 6.30966 6.33419 6.59578 6.64139 6.92847 7.39487 8.17347 8.39761 9.30169 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004006 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.712318 B = 6987.456085 C = 8305.915295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.103 3.897 3 N -0.515 5.515 4 C 0.424 3.576 5 O -0.438 6.438 6 N -0.545 5.545 7 H 0.434 0.566 8 C -0.090 4.090 9 C 0.601 3.399 10 O -0.562 6.562 11 N -0.616 5.616 12 C 0.102 3.898 13 C -0.097 4.097 14 H 0.063 0.937 15 C -0.089 4.089 16 C -0.113 4.113 17 C -0.115 4.115 18 C 0.179 3.821 19 H 0.046 0.954 20 N -0.721 5.721 21 C -0.220 4.220 22 H 0.069 0.931 23 C -0.067 4.067 24 N -0.963 5.963 25 Si 0.949 3.051 26 H -0.279 1.279 27 H -0.299 1.299 28 H -0.290 1.290 29 C -0.108 4.108 30 H 0.098 0.902 31 C 0.120 3.880 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.433 0.567 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.377 0.623 45 H 0.247 0.753 46 H 0.060 0.940 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 13.553 -15.686 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.032 4.032 3 N -0.247 5.247 4 C 0.122 3.878 5 O -0.243 6.243 6 N -0.168 5.168 7 H 0.280 0.720 8 C -0.205 4.205 9 C 0.391 3.609 10 O -0.442 6.442 11 N -0.348 5.348 12 C -0.020 4.020 13 C -0.116 4.116 14 H 0.082 0.918 15 C -0.126 4.126 16 C -0.150 4.150 17 C -0.153 4.153 18 C 0.069 3.931 19 H 0.064 0.936 20 N -0.362 5.362 21 C -0.353 4.353 22 H 0.087 0.913 23 C -0.260 4.260 24 N -0.615 5.615 25 Si 0.780 3.220 26 H -0.205 1.205 27 H -0.225 1.225 28 H -0.217 1.217 29 C -0.130 4.130 30 H 0.116 0.884 31 C -0.001 4.001 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.296 0.704 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.210 0.790 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.283 14.222 -15.064 21.379 hybrid contribution 0.148 -1.421 1.114 1.812 sum 5.431 12.800 -13.950 19.696 Atomic orbital electron populations 1.20329 0.85406 1.04070 1.03491 1.21194 0.97595 0.86019 0.98396 1.70261 0.99615 1.30496 1.24292 1.20256 0.87649 0.79177 1.00729 1.84830 1.41957 1.60712 1.36841 1.44127 1.08646 1.07958 1.56096 0.71969 1.20498 0.84205 0.94072 1.21731 1.16588 0.84837 0.82706 0.76767 1.90805 1.16830 1.83280 1.53267 1.49164 1.07163 1.06734 1.71785 1.22055 0.78762 0.99340 1.01798 1.21736 0.96469 0.92193 1.01205 0.91817 1.21270 0.94650 0.96125 1.00605 1.21442 0.98307 0.94658 1.00617 1.21743 0.93945 0.99035 1.00626 1.20180 0.96523 0.92545 0.83841 0.93626 1.42547 1.08457 1.83163 1.01994 1.19425 0.89857 1.36524 0.89464 0.91282 1.25226 0.98465 1.04474 0.97789 1.69752 1.24598 1.58802 1.08313 0.85572 0.80325 0.78166 0.77926 1.20517 1.22504 1.21715 1.22734 0.92810 0.98088 0.99367 0.88363 1.22054 0.98703 0.77916 1.01449 0.90453 0.89142 0.90062 0.70427 0.88248 0.91421 0.89372 0.90238 0.90002 0.94462 0.89512 0.93156 0.78956 0.94406 0.92188 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.91 9.87 71.24 0.70 -1.20 16 2 C 0.10 2.91 7.14 41.99 0.30 3.21 16 3 N -0.51 -13.73 11.22 -301.67 -3.38 -17.12 16 4 C 0.42 8.98 9.43 179.99 1.70 10.67 16 5 O -0.44 -6.06 13.62 -84.92 -1.16 -7.21 16 6 N -0.54 -11.37 5.73 -300.13 -1.72 -13.09 16 7 H 0.43 6.80 5.15 -92.71 -0.48 6.32 16 8 C -0.09 -2.55 6.90 39.80 0.27 -2.27 16 9 C 0.60 20.29 7.82 86.36 0.68 20.96 16 10 O -0.56 -22.46 15.09 -4.46 -0.07 -22.52 16 11 N -0.62 -19.23 3.38 -817.40 -2.76 -22.00 16 12 C 0.10 2.35 4.82 85.82 0.41 2.77 16 13 C -0.10 -2.53 2.21 -10.62 -0.02 -2.55 16 14 H 0.06 2.29 6.60 -2.38 -0.02 2.27 16 15 C -0.09 -1.67 5.70 30.37 0.17 -1.50 16 16 C -0.11 -2.59 5.58 30.72 0.17 -2.42 16 17 C -0.12 -2.98 5.51 30.71 0.17 -2.82 16 18 C 0.18 5.99 3.00 44.81 0.13 6.12 16 19 H 0.05 1.62 8.05 -2.39 -0.02 1.60 16 20 N -0.72 -32.09 3.84 -323.79 -1.24 -33.34 16 21 C -0.22 -11.45 8.10 84.03 0.68 -10.77 16 22 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 23 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 24 N -0.96 -56.79 13.06 21.65 0.28 -56.51 16 25 Si 0.95 46.50 29.55 68.60 2.03 48.52 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 28 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 29 C -0.11 -3.13 2.37 -10.24 -0.02 -3.15 16 30 H 0.10 2.32 8.01 -2.39 -0.02 2.30 16 31 C 0.12 4.28 6.44 86.07 0.55 4.84 16 32 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.25 6.46 -2.39 -0.02 2.23 16 35 H 0.43 0.76 9.06 -74.06 -0.67 0.09 16 36 H 0.10 1.54 7.37 -2.39 -0.02 1.52 16 37 H 0.07 1.51 6.99 -2.39 -0.02 1.49 16 38 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.04 1.10 7.03 -2.39 -0.02 1.08 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.38 18.12 5.98 -92.70 -0.55 17.57 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.06 2.70 6.15 -2.39 -0.01 2.69 16 47 H 0.06 2.26 8.07 -2.38 -0.02 2.24 16 Total: -1.00 -73.08 365.14 -2.32 -75.40 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.66 Total: 29.22 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 6.37 Total: 18.63 kcal Atomic # 7 Polarization: -133.22 SS G_CDS: -8.83 Total: -142.05 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.22 Total: -29.74 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -73.08 -2.32 -75.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.348 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds