Wall clock time and date at job start Tue Mar 31 2020 19:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33228 * 126.01737 * 2 1 4 4 C 1.31539 * 109.75727 * 179.97438 * 3 2 1 5 5 O 1.35207 * 125.49052 * 179.97438 * 4 3 2 6 6 N 1.34948 * 109.01551 * 359.73018 * 4 3 2 7 7 H 0.96999 * 126.54176 * 180.26572 * 6 4 3 8 8 C 1.36719 * 126.01597 * 180.02562 * 2 1 3 9 9 C 1.46373 * 126.82868 * 0.02562 * 8 2 1 10 10 O 1.21735 * 119.99983 * 0.02562 * 9 8 2 11 11 N 1.34780 * 120.00231 * 180.02562 * 9 8 2 12 12 C 1.47168 * 125.64599 * 359.97428 * 11 9 8 13 13 C 1.55350 * 106.96211 * 180.94342 * 12 11 9 14 14 H 1.09000 * 112.36593 * 215.22563 * 13 12 11 15 15 C 1.53006 * 106.98092 * 91.81942 * 13 12 11 16 16 C 1.51401 * 111.74175 * 197.70218 * 15 13 12 17 17 C 1.53337 * 108.64995 * 61.64050 * 16 15 13 18 18 C 1.52821 * 108.13059 * 296.28437 * 17 16 15 19 19 H 1.08993 * 109.03135 * 298.31374 * 18 17 16 20 20 N 1.46503 * 109.02672 * 179.40196 * 18 17 16 21 21 C 1.36940 * 119.99781 * 84.99939 * 20 18 17 22 22 H 1.07996 * 120.00296 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99813 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00280 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99841 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46769 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46888 * 119.99809 * 25 23 21 28 28 H 1.48496 * 109.46902 * 239.99613 * 25 23 21 29 29 C 1.50742 * 111.74400 * 58.90001 * 18 17 16 30 30 H 1.09001 * 109.26745 * 186.23230 * 29 18 17 31 31 C 1.47813 * 125.64817 * 179.97438 * 11 9 8 32 32 H 1.09006 * 109.47288 * 269.99801 * 1 2 3 33 33 H 1.09005 * 109.47451 * 29.99892 * 1 2 3 34 34 H 1.08997 * 109.47699 * 149.99933 * 1 2 3 35 35 H 0.96710 * 113.99403 * 89.97951 * 5 4 3 36 36 H 1.09002 * 109.96856 * 61.56586 * 12 11 9 37 37 H 1.09002 * 109.96286 * 300.32174 * 12 11 9 38 38 H 1.09005 * 109.15729 * 317.32157 * 15 13 12 39 39 H 1.08997 * 109.16488 * 76.50817 * 15 13 12 40 40 H 1.08992 * 109.23663 * 302.02469 * 16 15 13 41 41 H 1.08997 * 109.87688 * 181.63031 * 16 15 13 42 42 H 1.09002 * 109.73845 * 176.61250 * 17 16 15 43 43 H 1.09005 * 109.73836 * 55.95790 * 17 16 15 44 44 H 0.97003 * 120.00225 * 265.00357 * 20 18 17 45 45 H 0.97000 * 120.00019 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.51154 * 84.72740 * 31 11 9 47 47 H 1.08995 * 110.51676 * 322.00999 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7093 0.0006 5 8 4.6150 1.5463 0.0002 6 7 3.6180 -0.6386 0.0069 7 1 4.4242 -1.1780 0.0124 8 6 2.3109 -1.1059 -0.0005 9 6 1.8791 -2.5045 -0.0016 10 8 0.6922 -2.7751 -0.0027 11 7 2.7956 -3.4927 -0.0015 12 6 4.2557 -3.3083 -0.0008 13 6 4.8915 -4.7256 -0.0253 14 1 5.8134 -4.7767 0.5538 15 6 5.1144 -5.0899 -1.4946 16 6 5.3198 -6.5787 -1.6782 17 6 4.0556 -7.3095 -1.2104 18 6 3.8842 -7.0527 0.2863 19 1 4.7448 -7.4591 0.8174 20 7 2.6721 -7.7315 0.7516 21 6 2.7222 -9.0517 1.1119 22 1 3.6552 -9.5924 1.0534 23 6 1.5736 -9.6949 1.5523 24 7 0.4366 -9.0359 1.6240 25 14 1.6421 -11.4957 2.0445 26 1 3.0273 -12.0029 1.8744 27 1 1.2338 -11.6363 3.4654 28 1 0.7193 -12.2792 1.1845 29 6 3.7689 -5.5809 0.5908 30 1 3.7600 -5.4368 1.6712 31 6 2.5007 -4.9411 -0.0020 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5138 35 1 4.9234 1.7907 0.8837 36 1 4.5635 -2.7780 0.9004 37 1 4.5605 -2.7483 -0.8848 38 1 4.2397 -4.7932 -2.0734 39 1 5.9875 -4.5545 -1.8675 40 1 6.1722 -6.9001 -1.0799 41 1 5.5041 -6.8004 -2.7294 42 1 4.1608 -8.3793 -1.3907 43 1 3.1889 -6.9286 -1.7509 44 1 1.8341 -7.2457 0.8044 45 1 -0.3659 -9.4853 1.9321 46 1 2.3330 -5.2964 -1.0188 47 1 1.6358 -5.1551 0.6259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992719843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:41 Heat of formation + Delta-G solvation = 1.197818 kcal Electronic energy + Delta-G solvation = -29815.858450 eV Core-core repulsion = 25807.175319 eV Total energy + Delta-G solvation = -4008.683131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58455 -40.57275 -38.62959 -37.67422 -35.76107 -34.05536 -33.50116 -31.68942 -31.15028 -30.58791 -29.03970 -27.37914 -26.84116 -24.73590 -23.65637 -22.63534 -21.95473 -21.38622 -20.87701 -20.11427 -18.87118 -18.55975 -17.75932 -16.98205 -16.75704 -16.10503 -16.00115 -15.54976 -15.18849 -14.66209 -14.35056 -14.10019 -13.93007 -13.72960 -13.41904 -13.35373 -13.01724 -12.83581 -12.77914 -12.75171 -12.54783 -12.21360 -12.02904 -11.90047 -11.45876 -11.19534 -11.05962 -10.91193 -10.79273 -10.56774 -10.35040 -10.30522 -10.20301 -10.08647 -9.94822 -9.79794 -9.59092 -8.93357 -8.84473 -8.50387 -7.00532 -5.78947 -3.08974 0.92826 2.06900 2.41164 2.83028 3.16310 3.41240 3.46519 3.49285 3.52731 4.22342 4.28323 4.45779 4.57877 4.61444 4.76166 4.84356 4.99012 5.06825 5.20961 5.27946 5.32271 5.48116 5.52463 5.62147 5.65902 5.70233 5.71772 5.76108 5.78816 5.86313 5.94076 5.96510 6.12247 6.15062 6.22027 6.24446 6.29134 6.36362 6.40720 6.50367 6.64300 6.83326 7.03236 7.18297 7.35074 7.53609 7.67496 8.03488 8.38523 9.50026 10.05622 10.39827 11.43259 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.003037 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.055708 B = 9216.572950 C =10416.580434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.112 3.888 3 N -0.488 5.488 4 C 0.404 3.596 5 O -0.442 6.442 6 N -0.559 5.559 7 H 0.422 0.578 8 C -0.074 4.074 9 C 0.607 3.393 10 O -0.513 6.513 11 N -0.615 5.615 12 C 0.090 3.910 13 C -0.085 4.085 14 H 0.098 0.902 15 C -0.112 4.112 16 C -0.118 4.118 17 C -0.136 4.136 18 C 0.192 3.808 19 H 0.051 0.949 20 N -0.726 5.726 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.095 4.095 30 H 0.078 0.922 31 C 0.118 3.882 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.406 0.594 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.885 18.109 -3.836 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 N -0.219 5.219 4 C 0.103 3.897 5 O -0.243 6.243 6 N -0.181 5.181 7 H 0.266 0.734 8 C -0.189 4.189 9 C 0.395 3.605 10 O -0.389 6.389 11 N -0.349 5.349 12 C -0.034 4.034 13 C -0.104 4.104 14 H 0.117 0.883 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.177 4.177 18 C 0.081 3.919 19 H 0.069 0.931 20 N -0.367 5.367 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.115 4.115 30 H 0.097 0.903 31 C -0.003 4.003 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.971 18.674 -4.370 22.095 hybrid contribution 0.882 -1.683 0.801 2.062 sum 11.853 16.991 -3.569 21.023 Atomic orbital electron populations 1.20365 0.85781 1.04052 1.03501 1.20957 0.96941 0.85737 0.98589 1.70276 0.98598 1.30455 1.22603 1.20201 0.87439 0.78857 1.03231 1.84840 1.43337 1.61656 1.34454 1.44291 1.09164 1.07952 1.56701 0.73354 1.20845 0.82861 0.95213 1.19978 1.16286 0.85152 0.81727 0.77343 1.90888 1.15168 1.82376 1.50468 1.48538 1.05712 1.07573 1.73114 1.22561 0.81329 0.99466 1.00061 1.22212 0.98617 0.91930 0.97633 0.88348 1.21326 1.01359 0.97520 0.94745 1.21308 0.99290 0.94451 1.00547 1.22332 0.95889 1.00365 0.99073 1.19554 0.91823 0.87956 0.92520 0.93059 1.42523 1.06231 1.09739 1.78248 1.19248 0.94807 0.86892 1.36300 0.91123 1.24749 0.95677 0.98121 1.02231 1.69666 0.99330 1.35675 1.53041 0.86158 0.77176 0.85198 0.77866 1.20600 1.21903 1.21880 1.21808 0.92782 0.96410 1.00519 0.90343 1.22272 0.99227 0.76597 1.02197 0.90300 0.90828 0.88773 0.73604 0.91936 0.91614 0.92057 0.92375 0.92195 0.92487 0.91621 0.92432 0.78133 0.93465 0.90601 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 9.87 36.00 0.36 -0.58 16 2 C 0.11 1.49 7.14 -82.54 -0.59 0.90 16 3 N -0.49 -6.34 11.22 -10.83 -0.12 -6.46 16 4 C 0.40 4.22 9.43 -89.59 -0.84 3.37 16 5 O -0.44 -3.23 13.62 -17.32 -0.24 -3.47 16 6 N -0.56 -5.45 5.71 -10.91 -0.06 -5.52 16 7 H 0.42 3.03 5.14 -40.82 -0.21 2.82 16 8 C -0.07 -0.96 6.89 -81.98 -0.57 -1.53 16 9 C 0.61 9.16 7.81 -12.99 -0.10 9.06 16 10 O -0.51 -9.38 15.07 5.16 0.08 -9.30 16 11 N -0.62 -8.32 3.34 -171.70 -0.57 -8.89 16 12 C 0.09 0.86 4.44 -2.43 -0.01 0.85 16 13 C -0.08 -0.88 3.59 -88.85 -0.32 -1.19 16 14 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 15 C -0.11 -1.15 4.59 -27.54 -0.13 -1.28 16 16 C -0.12 -1.41 5.89 -27.36 -0.16 -1.57 16 17 C -0.14 -2.19 5.36 -26.65 -0.14 -2.33 16 18 C 0.19 3.39 2.46 -69.15 -0.17 3.22 16 19 H 0.05 0.94 8.06 -51.93 -0.42 0.52 16 20 N -0.73 -17.05 5.01 -54.62 -0.27 -17.32 16 21 C -0.24 -6.41 9.91 -15.06 -0.15 -6.56 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 25 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 C -0.10 -1.39 2.50 -90.75 -0.23 -1.61 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 31 C 0.12 1.87 5.08 -2.84 -0.01 1.86 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.22 6.46 -51.93 -0.34 0.88 16 35 H 0.41 0.76 9.06 45.56 0.41 1.18 16 36 H 0.06 0.49 7.23 -51.93 -0.38 0.11 16 37 H 0.07 0.53 6.76 -51.93 -0.35 0.18 16 38 H 0.06 0.71 7.21 -51.93 -0.37 0.33 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 0.98 6.80 -51.93 -0.35 0.62 16 44 H 0.38 9.73 6.44 -40.82 -0.26 9.47 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.08 1.25 6.17 -51.93 -0.32 0.93 16 47 H 0.09 1.70 7.43 -51.93 -0.39 1.32 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -33.81 366.39 -9.03 -42.84 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.90 Total: 10.39 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.16 Total: 2.19 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.31 Total: -65.13 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.16 Total: -12.77 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.81 -9.03 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.037 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds