Wall clock time and date at job start Tue Mar 31 2020 19:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33228 * 126.01737 * 2 1 4 4 C 1.31539 * 109.75727 * 179.97438 * 3 2 1 5 5 O 1.35207 * 125.49052 * 179.97438 * 4 3 2 6 6 N 1.34948 * 109.01551 * 359.73018 * 4 3 2 7 7 H 0.96999 * 126.54176 * 180.26572 * 6 4 3 8 8 C 1.36719 * 126.01597 * 180.02562 * 2 1 3 9 9 C 1.46373 * 126.82868 * 0.02562 * 8 2 1 10 10 O 1.21735 * 119.99983 * 0.02562 * 9 8 2 11 11 N 1.34780 * 120.00231 * 180.02562 * 9 8 2 12 12 C 1.47168 * 125.64599 * 359.97428 * 11 9 8 13 13 C 1.55350 * 106.96211 * 180.94342 * 12 11 9 14 14 H 1.09000 * 112.36593 * 215.22563 * 13 12 11 15 15 C 1.53006 * 106.98092 * 91.81942 * 13 12 11 16 16 C 1.51401 * 111.74175 * 197.70218 * 15 13 12 17 17 C 1.53337 * 108.64995 * 61.64050 * 16 15 13 18 18 C 1.52821 * 108.13059 * 296.28437 * 17 16 15 19 19 H 1.08993 * 109.03135 * 298.31374 * 18 17 16 20 20 N 1.46503 * 109.02672 * 179.40196 * 18 17 16 21 21 C 1.36940 * 119.99781 * 84.99939 * 20 18 17 22 22 H 1.07996 * 120.00296 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99813 * 180.02562 * 21 20 18 24 24 N 1.31616 * 120.00280 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99841 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46769 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.46888 * 119.99809 * 25 23 21 28 28 H 1.48496 * 109.46902 * 239.99613 * 25 23 21 29 29 C 1.50742 * 111.74400 * 58.90001 * 18 17 16 30 30 H 1.09001 * 109.26745 * 186.23230 * 29 18 17 31 31 C 1.47813 * 125.64817 * 179.97438 * 11 9 8 32 32 H 1.09006 * 109.47288 * 269.99801 * 1 2 3 33 33 H 1.09005 * 109.47451 * 29.99892 * 1 2 3 34 34 H 1.08997 * 109.47699 * 149.99933 * 1 2 3 35 35 H 0.96710 * 113.99403 * 89.97951 * 5 4 3 36 36 H 1.09002 * 109.96856 * 61.56586 * 12 11 9 37 37 H 1.09002 * 109.96286 * 300.32174 * 12 11 9 38 38 H 1.09005 * 109.15729 * 317.32157 * 15 13 12 39 39 H 1.08997 * 109.16488 * 76.50817 * 15 13 12 40 40 H 1.08992 * 109.23663 * 302.02469 * 16 15 13 41 41 H 1.08997 * 109.87688 * 181.63031 * 16 15 13 42 42 H 1.09002 * 109.73845 * 176.61250 * 17 16 15 43 43 H 1.09005 * 109.73836 * 55.95790 * 17 16 15 44 44 H 0.97003 * 120.00225 * 265.00357 * 20 18 17 45 45 H 0.97000 * 120.00019 * 180.02562 * 24 23 21 46 46 H 1.09000 * 110.51154 * 84.72740 * 31 11 9 47 47 H 1.08995 * 110.51676 * 322.00999 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7093 0.0006 5 8 4.6150 1.5463 0.0002 6 7 3.6180 -0.6386 0.0069 7 1 4.4242 -1.1780 0.0124 8 6 2.3109 -1.1059 -0.0005 9 6 1.8791 -2.5045 -0.0016 10 8 0.6922 -2.7751 -0.0027 11 7 2.7956 -3.4927 -0.0015 12 6 4.2557 -3.3083 -0.0008 13 6 4.8915 -4.7256 -0.0253 14 1 5.8134 -4.7767 0.5538 15 6 5.1144 -5.0899 -1.4946 16 6 5.3198 -6.5787 -1.6782 17 6 4.0556 -7.3095 -1.2104 18 6 3.8842 -7.0527 0.2863 19 1 4.7448 -7.4591 0.8174 20 7 2.6721 -7.7315 0.7516 21 6 2.7222 -9.0517 1.1119 22 1 3.6552 -9.5924 1.0534 23 6 1.5736 -9.6949 1.5523 24 7 0.4366 -9.0359 1.6240 25 14 1.6421 -11.4957 2.0445 26 1 3.0273 -12.0029 1.8744 27 1 1.2338 -11.6363 3.4654 28 1 0.7193 -12.2792 1.1845 29 6 3.7689 -5.5809 0.5908 30 1 3.7600 -5.4368 1.6712 31 6 2.5007 -4.9411 -0.0020 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8899 -0.5138 35 1 4.9234 1.7907 0.8837 36 1 4.5635 -2.7780 0.9004 37 1 4.5605 -2.7483 -0.8848 38 1 4.2397 -4.7932 -2.0734 39 1 5.9875 -4.5545 -1.8675 40 1 6.1722 -6.9001 -1.0799 41 1 5.5041 -6.8004 -2.7294 42 1 4.1608 -8.3793 -1.3907 43 1 3.1889 -6.9286 -1.7509 44 1 1.8341 -7.2457 0.8044 45 1 -0.3659 -9.4853 1.9321 46 1 2.3330 -5.2964 -1.0188 47 1 1.6358 -5.1551 0.6259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992719843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:40 Heat of formation + Delta-G solvation = -26.548673 kcal Electronic energy + Delta-G solvation = -29817.061628 eV Core-core repulsion = 25807.175319 eV Total energy + Delta-G solvation = -4009.886309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47198 -41.67481 -39.77280 -38.37362 -37.10396 -35.55780 -34.42114 -33.36467 -32.21646 -31.59614 -30.55518 -28.45582 -27.99548 -26.01928 -25.32263 -23.57733 -23.01200 -22.41281 -22.05409 -20.98730 -19.84580 -19.72781 -19.14234 -18.36383 -17.70822 -17.30889 -16.95993 -16.66464 -16.53617 -16.10285 -15.38153 -15.30535 -15.18499 -15.02667 -14.80098 -14.36937 -14.22741 -14.03812 -13.87436 -13.67172 -13.48095 -13.37094 -13.10830 -13.04544 -12.84315 -12.80001 -12.50905 -12.28491 -12.16400 -11.96345 -11.91185 -11.53022 -11.30549 -11.22788 -11.21149 -11.13024 -10.99255 -10.76029 -9.95990 -9.46675 -8.98824 -7.92511 -5.21108 0.00203 1.25185 1.46655 1.47232 1.50724 1.57030 1.78129 2.08635 2.56110 2.76673 3.27209 3.34231 3.40688 3.55766 3.71243 3.84960 3.96995 4.05344 4.09724 4.17655 4.29074 4.32928 4.36898 4.41702 4.55860 4.56424 4.66031 4.69771 4.79029 4.82523 4.87803 4.89648 4.94747 5.07751 5.11698 5.18516 5.24856 5.33727 5.41145 5.41483 5.53831 5.57309 5.69343 5.75790 6.27738 6.29366 6.60721 6.65157 6.90149 7.35028 8.12220 8.32995 9.31121 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016782 B = 0.003037 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.055708 B = 9216.572950 C =10416.580434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.104 3.896 3 N -0.517 5.517 4 C 0.428 3.572 5 O -0.437 6.437 6 N -0.542 5.542 7 H 0.436 0.564 8 C -0.088 4.088 9 C 0.602 3.398 10 O -0.561 6.561 11 N -0.613 5.613 12 C 0.085 3.915 13 C -0.071 4.071 14 H 0.134 0.866 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.131 4.131 18 C 0.188 3.812 19 H 0.053 0.947 20 N -0.742 5.742 21 C -0.231 4.231 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.969 3.031 26 H -0.262 1.262 27 H -0.297 1.297 28 H -0.298 1.298 29 C -0.089 4.089 30 H 0.067 0.933 31 C 0.126 3.874 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.433 0.567 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.370 0.630 45 H 0.248 0.752 46 H 0.063 0.937 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 19.915 -4.261 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.031 4.031 3 N -0.249 5.249 4 C 0.125 3.875 5 O -0.243 6.243 6 N -0.166 5.166 7 H 0.283 0.717 8 C -0.203 4.203 9 C 0.392 3.608 10 O -0.440 6.440 11 N -0.346 5.346 12 C -0.037 4.037 13 C -0.090 4.090 14 H 0.152 0.848 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.171 4.171 18 C 0.080 3.920 19 H 0.071 0.929 20 N -0.382 5.382 21 C -0.363 4.363 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.799 3.201 26 H -0.187 1.187 27 H -0.224 1.224 28 H -0.226 1.226 29 C -0.109 4.109 30 H 0.085 0.915 31 C 0.003 3.997 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.296 0.704 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.202 0.798 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.442 20.495 -4.797 26.106 hybrid contribution -0.355 -2.142 0.902 2.351 sum 15.087 18.353 -3.895 24.075 Atomic orbital electron populations 1.20332 0.85747 1.03782 1.03691 1.21148 0.97466 0.86179 0.98288 1.70277 0.99792 1.30537 1.24322 1.20236 0.87555 0.79229 1.00440 1.84820 1.41891 1.60725 1.36842 1.44062 1.08461 1.07848 1.56216 0.71691 1.20354 0.84308 0.93678 1.21932 1.16610 0.84751 0.82771 0.76677 1.90860 1.17219 1.83225 1.52664 1.48528 1.07633 1.06033 1.72399 1.22877 0.78342 0.99683 1.02814 1.22279 0.98087 0.90735 0.97885 0.84818 1.21351 1.02496 0.96472 0.94383 1.21247 0.96875 0.95102 1.01447 1.22163 0.97951 0.99473 0.97481 1.19810 0.89321 0.89542 0.93309 0.92884 1.42810 1.07706 1.09164 1.78497 1.19662 0.94718 0.88176 1.33783 0.90309 1.25544 0.95621 1.02175 1.03823 1.69841 0.99873 1.37200 1.55404 0.85131 0.77686 0.80552 0.76770 1.18663 1.22412 1.22567 1.21624 0.94299 0.94896 1.00084 0.91453 1.21938 0.98516 0.78708 1.00498 0.89907 0.89486 0.90527 0.70382 0.89109 0.88810 0.93560 0.88333 0.90673 0.91172 0.94031 0.94226 0.79780 0.94296 0.91884 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 9.87 71.23 0.70 -1.19 16 2 C 0.10 2.70 7.14 41.99 0.30 3.00 16 3 N -0.52 -12.47 11.22 -301.66 -3.39 -15.85 16 4 C 0.43 7.52 9.43 179.99 1.70 9.21 16 5 O -0.44 -4.51 13.62 -84.88 -1.16 -5.66 16 6 N -0.54 -8.81 5.71 -300.13 -1.71 -10.52 16 7 H 0.44 4.21 5.14 -92.71 -0.48 3.74 16 8 C -0.09 -2.18 6.89 39.80 0.27 -1.90 16 9 C 0.60 18.50 7.81 86.36 0.67 19.18 16 10 O -0.56 -21.94 15.07 -4.46 -0.07 -22.00 16 11 N -0.61 -16.32 3.34 -815.34 -2.72 -19.05 16 12 C 0.08 1.31 4.44 87.06 0.39 1.70 16 13 C -0.07 -1.19 3.59 -9.65 -0.03 -1.23 16 14 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 15 C -0.11 -1.80 4.59 30.07 0.14 -1.66 16 16 C -0.11 -2.25 5.89 30.18 0.18 -2.08 16 17 C -0.13 -4.17 5.36 30.65 0.16 -4.01 16 18 C 0.19 6.69 2.46 44.20 0.11 6.80 16 19 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16 20 N -0.74 -36.29 5.01 -326.73 -1.64 -37.92 16 21 C -0.23 -12.56 9.91 84.03 0.83 -11.73 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 24 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 25 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 C -0.09 -2.55 2.50 -10.88 -0.03 -2.58 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 C 0.13 4.18 5.08 86.44 0.44 4.62 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 2.13 6.46 -2.39 -0.02 2.12 16 35 H 0.43 -0.42 9.06 -74.05 -0.67 -1.09 16 36 H 0.09 0.97 7.23 -2.39 -0.02 0.95 16 37 H 0.09 1.01 6.76 -2.39 -0.02 1.00 16 38 H 0.05 0.93 7.21 -2.38 -0.02 0.91 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.04 1.39 6.80 -2.38 -0.02 1.37 16 44 H 0.37 20.06 6.44 -92.71 -0.60 19.46 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.06 2.23 6.17 -2.39 -0.01 2.21 16 47 H 0.04 1.89 7.43 -2.39 -0.02 1.87 16 Total: -1.00 -79.40 366.39 -2.77 -82.17 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.71 Total: 26.87 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.30 Total: 14.02 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -9.17 Total: -143.74 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.22 Total: -27.67 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -79.40 -2.77 -82.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992719843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.625 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds