Wall clock time and date at job start Tue Mar 31 2020 17:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32166 * 119.14084 * 2 1 4 4 C 1.32368 * 120.60522 * 179.97438 * 3 2 1 5 5 C 1.47498 * 120.50982 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99692 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00382 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00377 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.50040 * 324.99919 * 8 7 5 10 10 C 1.53038 * 109.49993 * 85.06164 * 8 7 5 11 11 C 1.53040 * 109.54101 * 181.28520 * 10 8 7 12 12 C 1.53196 * 109.33908 * 298.68635 * 11 10 8 13 13 N 1.46926 * 108.77779 * 54.61572 * 12 11 10 14 14 C 1.36934 * 120.62728 * 126.41082 * 13 12 11 15 15 H 1.08007 * 120.00056 * 208.99867 * 14 13 12 16 16 C 1.38807 * 120.00290 * 29.00234 * 14 13 12 17 17 N 1.31621 * 120.00044 * 15.03138 * 16 14 13 18 18 Si 1.86798 * 120.00288 * 195.02492 * 16 14 13 19 19 H 1.48503 * 109.46948 * 90.00140 * 18 16 14 20 20 H 1.48495 * 109.47422 * 210.00210 * 18 16 14 21 21 H 1.48499 * 109.47219 * 330.00628 * 18 16 14 22 22 C 1.46924 * 118.74084 * 306.39589 * 13 12 11 23 23 H 1.09000 * 109.70261 * 293.74895 * 22 13 12 24 24 C 1.52999 * 109.58782 * 173.39291 * 22 13 12 25 25 C 1.46679 * 118.97729 * 359.97438 * 4 3 2 26 26 O 1.21861 * 120.78252 * 179.97438 * 25 4 3 27 27 N 1.35150 * 118.43431 * 0.02562 * 25 4 3 28 28 H 0.97006 * 120.36970 * 180.02562 * 27 25 4 29 29 C 1.34903 * 119.26477 * 359.74690 * 27 25 4 30 30 C 1.50693 * 119.50410 * 180.24658 * 29 27 25 31 31 H 1.08996 * 109.46943 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47218 * 240.00074 * 1 2 3 33 33 H 1.08997 * 109.47279 * 120.00176 * 1 2 3 34 34 H 0.97005 * 119.99949 * 359.97438 * 7 5 4 35 35 H 1.08993 * 109.46280 * 301.34055 * 10 8 7 36 36 H 1.09006 * 109.45681 * 61.29802 * 10 8 7 37 37 H 1.08995 * 109.49876 * 178.71771 * 11 10 8 38 38 H 1.08996 * 109.49823 * 58.65328 * 11 10 8 39 39 H 1.09005 * 109.58681 * 294.83146 * 12 11 10 40 40 H 1.08997 * 109.58650 * 174.40855 * 12 11 10 41 41 H 0.96997 * 120.00378 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.46784 * 300.70597 * 24 22 13 43 43 H 1.08996 * 109.47190 * 60.70953 * 24 22 13 44 44 H 1.09003 * 109.47013 * 180.71224 * 24 22 13 45 45 H 1.09002 * 109.47155 * 270.26141 * 30 29 27 46 46 H 1.09003 * 109.47197 * 30.25949 * 30 29 27 47 47 H 1.08997 * 109.47265 * 150.26213 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4777 -0.0001 6 8 5.4058 2.4979 0.0009 7 7 3.4968 3.6335 -0.0006 8 6 4.2080 4.9142 -0.0017 9 1 5.1207 4.8241 0.5873 10 6 4.5641 5.2995 -1.4394 11 6 5.3352 6.6215 -1.4390 12 6 4.4516 7.7240 -0.8468 13 7 3.9868 7.2962 0.4797 14 6 4.1788 8.0930 1.5766 15 1 4.2855 7.6483 2.5551 16 6 4.2361 9.4723 1.4312 17 7 3.8188 10.0344 0.3166 18 14 4.9054 10.5307 2.8173 19 1 6.3707 10.7009 2.6468 20 1 4.2457 11.8607 2.7873 21 1 4.6319 9.8717 4.1196 22 6 3.3117 5.9974 0.6068 23 1 2.3599 6.0245 0.0763 24 6 3.0664 5.6894 2.0852 25 6 4.2170 -0.0764 0.0016 26 8 5.4356 -0.0836 0.0017 27 7 3.5184 -1.2333 0.0016 28 1 3.9814 -2.0858 0.0027 29 6 2.1701 -1.1896 0.0057 30 6 1.3858 -2.4763 0.0113 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3634 -0.5138 -0.8899 34 1 2.5269 3.6174 -0.0010 35 1 5.1818 4.5184 -1.8823 36 1 3.6497 5.4132 -2.0219 37 1 5.6082 6.8837 -2.4611 38 1 6.2377 6.5160 -0.8370 39 1 3.5937 7.8937 -1.4975 40 1 5.0289 8.6438 -0.7527 41 1 3.8592 10.9982 0.2148 42 1 4.0188 5.6676 2.6147 43 1 2.4285 6.4611 2.5161 44 1 2.5769 4.7198 2.1779 45 1 1.1975 -2.7915 -1.0150 46 1 1.9563 -3.2473 0.5293 47 1 0.4364 -2.3209 0.5237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993496665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:31 Heat of formation + Delta-G solvation = -11.622070 kcal Electronic energy + Delta-G solvation = -29507.103107 eV Core-core repulsion = 25497.864064 eV Total energy + Delta-G solvation = -4009.239043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.01148 -39.47518 -38.20555 -37.46427 -35.70137 -34.17530 -33.45542 -32.43443 -31.56119 -29.80760 -28.96295 -27.12940 -26.02840 -24.96953 -24.93409 -23.54526 -21.92951 -20.59735 -20.43770 -19.44302 -18.93534 -18.48510 -16.93083 -16.52470 -16.31601 -16.11054 -15.47465 -14.84626 -14.63767 -14.46585 -14.30387 -14.07445 -13.68723 -13.64506 -13.59828 -13.47198 -13.29420 -13.17471 -12.71603 -12.46416 -12.39788 -12.14735 -11.68000 -11.56253 -11.49308 -11.45270 -11.02150 -10.84734 -10.70814 -10.48121 -10.25990 -10.15824 -9.99397 -9.96088 -9.71443 -9.45463 -9.25705 -8.58912 -8.39987 -8.25313 -6.61164 -5.73253 -3.17424 -0.14261 1.38394 2.08290 2.65704 3.26579 3.42587 3.49491 3.50324 3.60610 3.63159 3.91400 3.99877 4.28488 4.54938 4.66280 4.81166 4.89851 5.07306 5.18011 5.22979 5.37116 5.44962 5.52933 5.60832 5.68822 5.73850 5.89497 5.99231 6.05031 6.07423 6.19150 6.31359 6.43703 6.51446 6.63471 6.72885 6.81527 6.84868 6.95091 7.07105 7.15423 7.22039 7.48483 7.48924 7.75006 7.87498 7.90100 8.48694 8.54768 9.26537 9.89216 10.45589 11.35294 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.002730 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.685601 B =10254.707719 C =10633.666423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.029 4.029 3 N -0.352 5.352 4 C 0.016 3.984 5 C 0.576 3.424 6 O -0.510 6.510 7 N -0.698 5.698 8 C 0.131 3.869 9 H 0.087 0.913 10 C -0.117 4.117 11 C -0.140 4.140 12 C 0.169 3.831 13 N -0.582 5.582 14 C -0.249 4.249 15 H 0.071 0.929 16 C 0.003 3.997 17 N -0.903 5.903 18 Si 0.902 3.098 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.169 3.831 23 H 0.029 0.971 24 C -0.137 4.137 25 C 0.495 3.505 26 O -0.481 6.481 27 N -0.588 5.588 28 H 0.420 0.580 29 C 0.150 3.850 30 C -0.130 4.130 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.404 0.596 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.926 -26.026 -2.498 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 N -0.069 5.069 4 C -0.153 4.153 5 C 0.358 3.642 6 O -0.383 6.383 7 N -0.349 5.349 8 C 0.026 3.974 9 H 0.106 0.894 10 C -0.156 4.156 11 C -0.180 4.180 12 C 0.044 3.956 13 N -0.305 5.305 14 C -0.379 4.379 15 H 0.089 0.911 16 C -0.196 4.196 17 N -0.548 5.548 18 Si 0.732 3.268 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.061 3.939 23 H 0.047 0.953 24 C -0.195 4.195 25 C 0.286 3.714 26 O -0.352 6.352 27 N -0.223 5.223 28 H 0.260 0.740 29 C 0.034 3.966 30 C -0.188 4.188 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.239 0.761 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.822 -24.990 -2.510 26.620 hybrid contribution 0.459 -0.686 0.564 0.999 sum -8.363 -25.676 -1.946 27.074 Atomic orbital electron populations 1.20531 0.86926 1.04648 1.02151 1.20138 0.97913 0.85584 1.11904 1.67574 1.08455 1.29488 1.01402 1.24101 0.88817 0.94142 1.08254 1.17040 0.86636 0.82125 0.78371 1.90892 1.12328 1.86418 1.48647 1.45912 1.10687 1.05145 1.73190 1.21853 0.97148 0.81176 0.97269 0.89443 1.21773 0.99910 0.97856 0.96082 1.22187 0.99844 0.96083 0.99873 1.20859 0.94934 0.95164 0.84684 1.44044 1.65351 1.15683 1.05459 1.19199 1.43268 0.87157 0.88229 0.91132 1.25064 1.00278 0.96981 0.97241 1.70022 1.48764 1.09694 1.26321 0.86289 0.78793 0.79835 0.81846 1.21467 1.21848 1.20445 1.20547 0.92708 0.86250 0.94386 0.95320 1.21825 1.01639 0.99399 0.96612 1.19128 0.88472 0.83971 0.79779 1.91071 1.11409 1.85221 1.47503 1.43747 1.06380 1.11981 1.60229 0.73981 1.21517 0.83525 0.99001 0.92536 1.21225 1.00956 0.91789 1.04833 0.89778 0.90803 0.90882 0.76094 0.93107 0.92680 0.93020 0.92484 0.96299 0.89248 0.93708 0.92684 0.91792 0.94166 0.88427 0.89982 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 8.83 36.01 0.32 -0.08 16 2 C -0.03 -0.24 6.70 -83.18 -0.56 -0.79 16 3 N -0.35 -4.14 9.55 -4.84 -0.05 -4.19 16 4 C 0.02 0.23 6.96 -80.46 -0.56 -0.33 16 5 C 0.58 10.35 7.77 -12.49 -0.10 10.25 16 6 O -0.51 -11.21 15.17 -15.20 -0.23 -11.44 16 7 N -0.70 -11.67 4.57 -54.75 -0.25 -11.92 16 8 C 0.13 2.54 1.99 -67.81 -0.14 2.41 16 9 H 0.09 1.94 7.58 -51.93 -0.39 1.54 16 10 C -0.12 -2.25 5.46 -26.69 -0.15 -2.40 16 11 C -0.14 -2.89 6.08 -26.61 -0.16 -3.05 16 12 C 0.17 4.10 5.29 -3.71 -0.02 4.08 16 13 N -0.58 -14.52 2.99 -164.77 -0.49 -15.02 16 14 C -0.25 -6.74 8.61 -15.06 -0.13 -6.87 16 15 H 0.07 1.88 6.20 -52.48 -0.33 1.55 16 16 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 17 N -0.90 -26.14 11.14 55.49 0.62 -25.52 16 18 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.17 3.53 3.03 -67.60 -0.21 3.33 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.14 -2.66 7.84 37.16 0.29 -2.37 16 25 C 0.49 6.91 7.93 -12.68 -0.10 6.81 16 26 O -0.48 -8.73 16.40 -15.43 -0.25 -8.99 16 27 N -0.59 -4.77 5.29 -9.45 -0.05 -4.82 16 28 H 0.42 2.13 8.81 -40.82 -0.36 1.77 16 29 C 0.15 0.90 6.78 -81.98 -0.56 0.34 16 30 C -0.13 -0.16 9.60 36.00 0.35 0.19 16 31 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.07 0.21 7.35 -51.93 -0.38 -0.17 16 33 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.40 5.92 7.97 -40.82 -0.33 5.59 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 2.42 6.06 -51.93 -0.31 2.10 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 1.12 7.40 -51.93 -0.38 0.74 16 43 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 44 H 0.04 0.66 7.79 -51.93 -0.40 0.26 16 45 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 46 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 47 H 0.10 0.01 6.43 -51.93 -0.33 -0.33 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -36.15 376.69 -8.83 -44.99 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.98 Total: 2.85 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -1.80 Total: 11.50 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -0.22 Total: -61.46 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.48 Total: -20.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.15 -8.83 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.365 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds