Wall clock time and date at job start Tue Mar 31 2020 17:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32166 * 119.14084 * 2 1 4 4 C 1.32368 * 120.60522 * 179.97438 * 3 2 1 5 5 C 1.47498 * 120.50982 * 179.97438 * 4 3 2 6 6 O 1.21601 * 119.99692 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00382 * 0.02562 * 5 4 3 8 8 C 1.46493 * 120.00377 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.50040 * 324.99919 * 8 7 5 10 10 C 1.53038 * 109.49993 * 85.06164 * 8 7 5 11 11 C 1.53040 * 109.54101 * 181.28520 * 10 8 7 12 12 C 1.53196 * 109.33908 * 298.68635 * 11 10 8 13 13 N 1.46926 * 108.77779 * 54.61572 * 12 11 10 14 14 C 1.36934 * 120.62728 * 126.41082 * 13 12 11 15 15 H 1.08007 * 120.00056 * 208.99867 * 14 13 12 16 16 C 1.38807 * 120.00290 * 29.00234 * 14 13 12 17 17 N 1.31621 * 120.00044 * 15.03138 * 16 14 13 18 18 Si 1.86798 * 120.00288 * 195.02492 * 16 14 13 19 19 H 1.48503 * 109.46948 * 90.00140 * 18 16 14 20 20 H 1.48495 * 109.47422 * 210.00210 * 18 16 14 21 21 H 1.48499 * 109.47219 * 330.00628 * 18 16 14 22 22 C 1.46924 * 118.74084 * 306.39589 * 13 12 11 23 23 H 1.09000 * 109.70261 * 293.74895 * 22 13 12 24 24 C 1.52999 * 109.58782 * 173.39291 * 22 13 12 25 25 C 1.46679 * 118.97729 * 359.97438 * 4 3 2 26 26 O 1.21861 * 120.78252 * 179.97438 * 25 4 3 27 27 N 1.35150 * 118.43431 * 0.02562 * 25 4 3 28 28 H 0.97006 * 120.36970 * 180.02562 * 27 25 4 29 29 C 1.34903 * 119.26477 * 359.74690 * 27 25 4 30 30 C 1.50693 * 119.50410 * 180.24658 * 29 27 25 31 31 H 1.08996 * 109.46943 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47218 * 240.00074 * 1 2 3 33 33 H 1.08997 * 109.47279 * 120.00176 * 1 2 3 34 34 H 0.97005 * 119.99949 * 359.97438 * 7 5 4 35 35 H 1.08993 * 109.46280 * 301.34055 * 10 8 7 36 36 H 1.09006 * 109.45681 * 61.29802 * 10 8 7 37 37 H 1.08995 * 109.49876 * 178.71771 * 11 10 8 38 38 H 1.08996 * 109.49823 * 58.65328 * 11 10 8 39 39 H 1.09005 * 109.58681 * 294.83146 * 12 11 10 40 40 H 1.08997 * 109.58650 * 174.40855 * 12 11 10 41 41 H 0.96997 * 120.00378 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.46784 * 300.70597 * 24 22 13 43 43 H 1.08996 * 109.47190 * 60.70953 * 24 22 13 44 44 H 1.09003 * 109.47013 * 180.71224 * 24 22 13 45 45 H 1.09002 * 109.47155 * 270.26141 * 30 29 27 46 46 H 1.09003 * 109.47197 * 30.25949 * 30 29 27 47 47 H 1.08997 * 109.47265 * 150.26213 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4777 -0.0001 6 8 5.4058 2.4979 0.0009 7 7 3.4968 3.6335 -0.0006 8 6 4.2080 4.9142 -0.0017 9 1 5.1207 4.8241 0.5873 10 6 4.5641 5.2995 -1.4394 11 6 5.3352 6.6215 -1.4390 12 6 4.4516 7.7240 -0.8468 13 7 3.9868 7.2962 0.4797 14 6 4.1788 8.0930 1.5766 15 1 4.2855 7.6483 2.5551 16 6 4.2361 9.4723 1.4312 17 7 3.8188 10.0344 0.3166 18 14 4.9054 10.5307 2.8173 19 1 6.3707 10.7009 2.6468 20 1 4.2457 11.8607 2.7873 21 1 4.6319 9.8717 4.1196 22 6 3.3117 5.9974 0.6068 23 1 2.3599 6.0245 0.0763 24 6 3.0664 5.6894 2.0852 25 6 4.2170 -0.0764 0.0016 26 8 5.4356 -0.0836 0.0017 27 7 3.5184 -1.2333 0.0016 28 1 3.9814 -2.0858 0.0027 29 6 2.1701 -1.1896 0.0057 30 6 1.3858 -2.4763 0.0113 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5138 0.8900 33 1 -0.3634 -0.5138 -0.8899 34 1 2.5269 3.6174 -0.0010 35 1 5.1818 4.5184 -1.8823 36 1 3.6497 5.4132 -2.0219 37 1 5.6082 6.8837 -2.4611 38 1 6.2377 6.5160 -0.8370 39 1 3.5937 7.8937 -1.4975 40 1 5.0289 8.6438 -0.7527 41 1 3.8592 10.9982 0.2148 42 1 4.0188 5.6676 2.6147 43 1 2.4285 6.4611 2.5161 44 1 2.5769 4.7198 2.1779 45 1 1.1975 -2.7915 -1.0150 46 1 1.9563 -3.2473 0.5293 47 1 0.4364 -2.3209 0.5237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993496665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:29 Heat of formation + Delta-G solvation = -38.562596 kcal Electronic energy + Delta-G solvation = -29508.271336 eV Core-core repulsion = 25497.864064 eV Total energy + Delta-G solvation = -4010.407272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.86746 -40.90792 -39.30339 -38.98187 -36.57561 -35.85887 -34.34531 -33.99650 -33.36009 -31.11329 -29.88957 -28.17488 -27.54391 -26.83800 -25.57613 -24.73367 -23.39010 -22.32956 -21.70476 -21.11481 -19.87412 -19.47206 -18.26887 -17.97219 -17.36015 -17.31423 -17.02240 -16.55439 -15.92068 -15.70130 -15.55688 -15.20214 -15.02758 -14.91512 -14.87010 -14.52744 -14.29017 -14.05654 -13.83016 -13.74935 -13.35123 -13.25054 -12.82552 -12.78732 -12.71978 -12.69276 -12.53030 -12.40744 -12.35969 -12.32253 -11.99119 -11.84265 -11.77592 -11.63994 -11.33297 -11.14361 -10.53178 -10.50652 -10.04390 -9.07106 -8.64823 -7.83787 -5.30055 -0.95659 0.52168 1.25169 1.47435 1.50070 1.56737 1.57599 2.12252 2.54130 2.57177 2.94275 3.02403 3.31270 3.43027 3.63469 3.76608 3.86483 3.96309 4.05232 4.20765 4.36341 4.50397 4.57977 4.62163 4.66881 4.71366 4.77286 4.88977 4.92437 4.93046 4.97508 5.03252 5.08773 5.12928 5.20196 5.24099 5.27281 5.28560 5.43347 5.48967 5.54936 5.60158 5.71676 5.77634 6.34918 6.43324 6.56216 6.67447 7.17320 7.23581 7.87267 8.39490 9.23260 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021084 B = 0.002730 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.685601 B =10254.707719 C =10633.666423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.049 4.049 3 N -0.339 5.339 4 C -0.061 4.061 5 C 0.577 3.423 6 O -0.565 6.565 7 N -0.689 5.689 8 C 0.146 3.854 9 H 0.056 0.944 10 C -0.110 4.110 11 C -0.129 4.129 12 C 0.176 3.824 13 N -0.600 5.600 14 C -0.253 4.253 15 H 0.072 0.928 16 C -0.048 4.048 17 N -0.933 5.933 18 Si 0.962 3.038 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.269 1.269 22 C 0.168 3.832 23 H 0.036 0.964 24 C -0.127 4.127 25 C 0.490 3.510 26 O -0.542 6.542 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.201 3.799 30 C -0.133 4.133 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.415 0.585 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.007 0.993 40 H 0.058 0.942 41 H 0.249 0.751 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.127 0.873 46 H 0.105 0.895 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.141 -30.144 -2.294 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.180 4.180 3 N -0.057 5.057 4 C -0.222 4.222 5 C 0.363 3.637 6 O -0.443 6.443 7 N -0.341 5.341 8 C 0.040 3.960 9 H 0.074 0.926 10 C -0.148 4.148 11 C -0.169 4.169 12 C 0.051 3.949 13 N -0.324 5.324 14 C -0.384 4.384 15 H 0.089 0.911 16 C -0.244 4.244 17 N -0.579 5.579 18 Si 0.791 3.209 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.194 1.194 22 C 0.061 3.939 23 H 0.054 0.946 24 C -0.185 4.185 25 C 0.285 3.715 26 O -0.419 6.419 27 N -0.199 5.199 28 H 0.282 0.718 29 C 0.082 3.918 30 C -0.190 4.190 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.252 0.748 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.145 0.855 46 H 0.124 0.876 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.044 -29.121 -2.298 31.597 hybrid contribution 1.151 0.212 0.482 1.266 sum -10.892 -28.909 -1.816 30.946 Atomic orbital electron populations 1.20713 0.83813 1.04758 1.04829 1.21003 0.99822 0.85176 1.11961 1.67466 1.07207 1.31852 0.99198 1.23101 0.89619 0.92608 1.16893 1.17492 0.86189 0.83352 0.76669 1.90839 1.14707 1.87389 1.51326 1.45643 1.10934 1.04076 1.73409 1.21391 0.95765 0.82124 0.96748 0.92595 1.21689 1.00203 0.96796 0.96131 1.22033 0.98614 0.95668 1.00574 1.20657 0.94477 0.95122 0.84662 1.44274 1.66142 1.16791 1.05148 1.19467 1.42326 0.87651 0.88909 0.91070 1.25754 1.01082 0.98108 0.99418 1.70161 1.50231 1.09513 1.28032 0.85338 0.77686 0.78089 0.79781 1.21731 1.21988 1.19357 1.20668 0.92735 0.84825 0.95664 0.94602 1.21722 1.00870 1.00674 0.95188 1.19059 0.87842 0.85143 0.79472 1.91027 1.13673 1.86152 1.51047 1.43696 1.07427 1.11432 1.57298 0.71818 1.22518 0.82451 1.01080 0.85779 1.21615 1.01308 0.88911 1.07152 0.91164 0.88028 0.88117 0.74785 0.93148 0.91328 0.90750 0.93872 0.97508 0.92362 0.94175 0.94198 0.92772 0.91115 0.85509 0.87639 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 8.83 71.24 0.63 0.27 16 2 C -0.05 -0.60 6.70 42.03 0.28 -0.32 16 3 N -0.34 -7.54 9.55 -169.24 -1.62 -9.16 16 4 C -0.06 -1.84 6.96 43.71 0.30 -1.54 16 5 C 0.58 21.96 7.77 86.68 0.67 22.63 16 6 O -0.57 -26.86 15.17 15.54 0.24 -26.62 16 7 N -0.69 -23.78 4.57 -445.37 -2.03 -25.81 16 8 C 0.15 5.90 1.99 45.07 0.09 5.99 16 9 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 10 C -0.11 -4.31 5.46 30.62 0.17 -4.14 16 11 C -0.13 -5.49 6.08 30.67 0.19 -5.31 16 12 C 0.18 8.88 5.29 86.36 0.46 9.34 16 13 N -0.60 -30.90 2.99 -675.22 -2.02 -32.92 16 14 C -0.25 -14.09 8.61 84.03 0.72 -13.37 16 15 H 0.07 3.88 6.20 -2.91 -0.02 3.86 16 16 C -0.05 -2.74 4.96 84.86 0.42 -2.32 16 17 N -0.93 -55.64 11.14 21.65 0.24 -55.40 16 18 Si 0.96 46.04 29.58 68.60 2.03 48.07 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 C 0.17 7.17 3.03 44.98 0.14 7.31 16 23 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 24 C -0.13 -4.99 7.84 71.98 0.56 -4.42 16 25 C 0.49 13.86 7.93 86.39 0.68 14.55 16 26 O -0.54 -20.89 16.40 14.71 0.24 -20.64 16 27 N -0.56 -7.62 5.29 -301.76 -1.60 -9.22 16 28 H 0.44 3.00 8.81 -92.70 -0.82 2.19 16 29 C 0.20 1.44 6.78 41.61 0.28 1.72 16 30 C -0.13 0.66 9.60 71.23 0.68 1.34 16 31 H 0.07 0.56 8.10 -2.39 -0.02 0.55 16 32 H 0.10 -0.09 7.35 -2.39 -0.02 -0.10 16 33 H 0.10 -0.07 8.09 -2.39 -0.02 -0.09 16 34 H 0.41 12.19 7.97 -92.70 -0.74 11.45 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.06 3.29 6.06 -2.39 -0.01 3.28 16 41 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 43 H 0.05 2.21 7.66 -2.39 -0.02 2.19 16 44 H 0.07 2.30 7.79 -2.39 -0.02 2.28 16 45 H 0.13 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.11 -0.80 8.14 -2.39 -0.02 -0.82 16 47 H 0.13 -1.05 6.43 -2.39 -0.02 -1.07 16 Total: -1.00 -87.68 376.69 1.23 -86.45 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -0.54 Total: 13.51 kcal Atomic # 6 Polarization: 25.45 SS G_CDS: 6.28 Total: 31.74 kcal Atomic # 7 Polarization: -125.48 SS G_CDS: -7.02 Total: -132.50 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: 0.48 Total: -47.27 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -87.68 1.23 -86.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.890 kcal (2) G-P(sol) polarization free energy of solvation -87.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds