Wall clock time and date at job start Tue Mar 31 2020 17:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32179 * 119.14418 * 2 1 4 4 C 1.32357 * 120.60283 * 180.26839 * 3 2 1 5 5 C 1.47502 * 120.50802 * 179.74176 * 4 3 2 6 6 O 1.21599 * 120.00060 * 179.72106 * 5 4 3 7 7 N 1.34783 * 119.99805 * 359.71614 * 5 4 3 8 8 C 1.46502 * 119.99579 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.50136 * 35.07002 * 8 7 5 10 10 C 1.53035 * 109.49847 * 274.99786 * 8 7 5 11 11 C 1.53041 * 109.54001 * 178.65426 * 10 8 7 12 12 C 1.53193 * 109.30945 * 61.36932 * 11 10 8 13 13 N 1.46932 * 108.77428 * 305.36377 * 12 11 10 14 14 C 1.36928 * 120.62883 * 233.58787 * 13 12 11 15 15 H 1.08001 * 119.99855 * 152.58140 * 14 13 12 16 16 C 1.38816 * 120.00302 * 332.58271 * 14 13 12 17 17 N 1.31625 * 119.99687 * 334.09603 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 154.10048 * 16 14 13 19 19 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00089 * 18 16 14 21 21 H 1.48501 * 109.47421 * 59.99658 * 18 16 14 22 22 C 1.46921 * 118.73572 * 53.86298 * 13 12 11 23 23 H 1.09001 * 109.58789 * 65.93044 * 22 13 12 24 24 C 1.53003 * 109.58308 * 186.35070 * 22 13 12 25 25 C 1.46676 * 118.98321 * 359.46321 * 4 3 2 26 26 O 1.21860 * 120.78212 * 180.29892 * 25 4 3 27 27 N 1.35143 * 118.43390 * 0.27614 * 25 4 3 28 28 H 0.97003 * 120.37279 * 179.97438 * 27 25 4 29 29 C 1.34905 * 119.26177 * 0.02562 * 27 25 4 30 30 C 1.50698 * 119.49770 * 179.97438 * 29 27 25 31 31 H 1.09007 * 109.47034 * 270.25386 * 1 2 3 32 32 H 1.09008 * 109.47228 * 30.25182 * 1 2 3 33 33 H 1.08999 * 109.47311 * 150.25579 * 1 2 3 34 34 H 0.96996 * 119.99912 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.45942 * 58.63720 * 10 8 7 36 36 H 1.08998 * 109.45256 * 298.67238 * 10 8 7 37 37 H 1.08999 * 109.49582 * 301.41532 * 11 10 8 38 38 H 1.09001 * 109.52690 * 181.33441 * 11 10 8 39 39 H 1.09000 * 109.58243 * 185.58397 * 12 11 10 40 40 H 1.08998 * 109.70395 * 65.22183 * 12 11 10 41 41 H 0.96997 * 120.00244 * 354.51952 * 17 16 14 42 42 H 1.08994 * 109.47278 * 60.00082 * 24 22 13 43 43 H 1.09006 * 109.46769 * 180.02562 * 24 22 13 44 44 H 1.08994 * 109.47175 * 299.99845 * 24 22 13 45 45 H 1.09001 * 109.47574 * 359.97438 * 30 29 27 46 46 H 1.09000 * 109.47067 * 119.99948 * 30 29 27 47 47 H 1.09001 * 109.47357 * 239.99888 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1881 -0.0053 5 6 4.1900 2.4776 -0.0111 6 8 5.4058 2.4978 -0.0108 7 7 3.4967 3.6335 -0.0167 8 6 4.2081 4.9142 -0.0229 9 1 5.1199 4.8211 -0.6128 10 6 4.5660 5.3067 1.4123 11 6 5.3386 6.6277 1.4042 12 6 4.4546 7.7279 0.8083 13 7 3.9872 7.2939 -0.5154 14 6 4.1777 8.0853 -1.6165 15 1 4.2570 7.6375 -2.5961 16 6 4.2688 9.4631 -1.4736 17 7 3.6930 10.0581 -0.4504 18 14 5.2083 10.4726 -2.7335 19 1 5.1563 11.9079 -2.3562 20 1 6.6227 10.0218 -2.7739 21 1 4.5925 10.2907 -4.0725 22 6 3.3063 5.9974 -0.6340 23 1 2.3578 6.0324 -0.0980 24 6 3.0532 5.6842 -2.1101 25 6 4.2170 -0.0764 0.0008 26 8 5.4355 -0.0836 0.0016 27 7 3.5184 -1.2333 0.0059 28 1 3.9814 -2.0857 0.0096 29 6 2.1701 -1.1895 0.0048 30 6 1.3859 -2.4763 0.0099 31 1 -0.3633 0.0046 1.0277 32 1 -0.3634 0.8878 -0.5178 33 1 -0.3634 -0.8922 -0.5098 34 1 2.5269 3.6173 -0.0165 35 1 5.1840 4.5274 1.8585 36 1 3.6525 5.4238 1.9952 37 1 6.2398 6.5184 0.8008 38 1 5.6140 6.8951 2.4244 39 1 5.0322 8.6468 0.7086 40 1 3.5978 7.9035 1.4588 41 1 3.1391 9.5462 0.1595 42 1 4.0042 5.6439 -2.6412 43 1 2.5476 4.7223 -2.1959 44 1 2.4271 6.4634 -2.5447 45 1 2.0743 -3.3214 0.0137 46 1 0.7574 -2.5152 0.8997 47 1 0.7586 -2.5232 -0.8803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993496667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:37 Heat of formation + Delta-G solvation = -13.828183 kcal Electronic energy + Delta-G solvation = -29552.117423 eV Core-core repulsion = 25542.782716 eV Total energy + Delta-G solvation = -4009.334707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.04801 -39.54253 -38.24513 -37.60873 -35.74537 -34.36554 -33.49982 -32.55225 -31.65252 -29.80025 -28.87880 -27.14552 -26.11146 -25.00795 -24.85294 -23.54658 -21.88265 -20.81920 -20.48038 -19.47093 -18.97630 -18.53239 -17.06488 -16.80963 -16.55138 -16.17578 -15.54492 -14.73210 -14.55725 -14.50427 -14.35570 -14.22604 -13.75721 -13.69007 -13.58503 -13.51366 -13.36533 -13.23939 -13.09399 -12.48059 -12.44885 -12.16031 -11.83037 -11.63529 -11.51600 -11.25856 -11.18012 -11.00032 -10.68959 -10.35162 -10.26684 -10.15815 -10.04137 -9.95762 -9.84916 -9.48056 -9.12139 -8.67057 -8.33249 -8.25203 -6.84404 -6.00882 -3.16193 -0.17342 1.34977 2.05426 2.61624 3.21507 3.54235 3.56664 3.58731 3.59094 3.75960 3.88062 3.94477 4.23155 4.64236 4.64723 4.77926 4.84280 5.03566 5.14284 5.23748 5.24643 5.35908 5.49452 5.52202 5.63577 5.69879 5.75826 5.93296 5.95265 6.01700 6.06972 6.20045 6.34501 6.43018 6.49300 6.57511 6.67040 6.71727 6.80127 6.98618 7.04952 7.16565 7.19787 7.29026 7.45533 7.83587 8.08515 8.47064 8.63446 9.16111 9.90787 10.33908 11.27472 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002738 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.662219 B =10224.894279 C =10593.228377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.030 4.030 3 N -0.352 5.352 4 C 0.015 3.985 5 C 0.576 3.424 6 O -0.509 6.509 7 N -0.699 5.699 8 C 0.131 3.869 9 H 0.089 0.911 10 C -0.118 4.118 11 C -0.134 4.134 12 C 0.148 3.852 13 N -0.589 5.589 14 C -0.347 4.347 15 H 0.063 0.937 16 C -0.023 4.023 17 N -0.916 5.916 18 Si 1.062 2.938 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.171 3.829 23 H 0.027 0.973 24 C -0.134 4.134 25 C 0.495 3.505 26 O -0.481 6.481 27 N -0.587 5.587 28 H 0.420 0.580 29 C 0.150 3.850 30 C -0.127 4.127 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.404 0.596 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.017 0.983 41 H 0.269 0.731 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -26.568 2.656 28.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 N -0.069 5.069 4 C -0.154 4.154 5 C 0.359 3.641 6 O -0.382 6.382 7 N -0.350 5.350 8 C 0.026 3.974 9 H 0.107 0.893 10 C -0.157 4.157 11 C -0.174 4.174 12 C 0.023 3.977 13 N -0.314 5.314 14 C -0.476 4.476 15 H 0.080 0.920 16 C -0.225 4.225 17 N -0.556 5.556 18 Si 0.892 3.108 19 H -0.212 1.212 20 H -0.221 1.221 21 H -0.221 1.221 22 C 0.063 3.937 23 H 0.045 0.955 24 C -0.192 4.192 25 C 0.286 3.714 26 O -0.352 6.352 27 N -0.223 5.223 28 H 0.261 0.739 29 C 0.035 3.965 30 C -0.184 4.184 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.035 0.965 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.085 -24.165 2.241 25.581 hybrid contribution -0.432 -2.914 0.441 2.979 sum -8.517 -27.079 2.682 28.514 Atomic orbital electron populations 1.20540 0.86872 1.03814 1.03108 1.20132 0.97928 0.85575 1.11950 1.67533 1.08449 1.29564 1.01384 1.24073 0.88802 0.94120 1.08380 1.17048 0.86633 0.82126 0.78316 1.90894 1.12324 1.86420 1.48569 1.45897 1.10677 1.05121 1.73323 1.21915 0.97157 0.81191 0.97131 0.89335 1.21774 0.99888 0.97756 0.96251 1.22054 0.99689 0.95681 0.99938 1.21015 0.94957 0.96108 0.85660 1.44136 1.65255 1.16796 1.05173 1.19961 1.49935 0.89722 0.87995 0.91967 1.25790 1.00174 0.94216 1.02344 1.70777 1.29075 1.38221 1.17529 0.83572 0.76299 0.76170 0.74801 1.21202 1.22057 1.22059 1.20620 0.92352 0.86102 0.94621 0.95505 1.21789 1.01633 0.99325 0.96412 1.19119 0.88475 0.83974 0.79788 1.91072 1.11404 1.85225 1.47486 1.43786 1.06348 1.11984 1.60163 0.73945 1.21534 0.83531 0.98964 0.92518 1.21201 1.00489 0.91392 1.05351 0.90697 0.90006 0.90761 0.76090 0.92809 0.92675 0.92072 0.92778 0.90078 0.96464 0.92040 0.92616 0.94196 0.91810 0.90351 0.88118 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 9.65 36.00 0.35 -0.05 16 2 C -0.03 -0.24 6.70 -83.18 -0.56 -0.80 16 3 N -0.35 -4.13 9.57 -4.85 -0.05 -4.18 16 4 C 0.02 0.22 6.96 -80.46 -0.56 -0.34 16 5 C 0.58 10.34 7.77 -12.48 -0.10 10.24 16 6 O -0.51 -11.18 15.17 -15.20 -0.23 -11.41 16 7 N -0.70 -11.66 4.60 -54.52 -0.25 -11.91 16 8 C 0.13 2.55 2.01 -67.59 -0.14 2.41 16 9 H 0.09 1.97 7.58 -51.93 -0.39 1.58 16 10 C -0.12 -2.23 5.46 -26.69 -0.15 -2.38 16 11 C -0.13 -2.71 6.08 -26.61 -0.16 -2.88 16 12 C 0.15 3.51 4.71 -3.71 -0.02 3.50 16 13 N -0.59 -14.64 2.85 -164.52 -0.47 -15.11 16 14 C -0.35 -9.52 8.52 -15.06 -0.13 -9.65 16 15 H 0.06 1.71 6.24 -52.49 -0.33 1.38 16 16 C -0.02 -0.66 4.66 -17.43 -0.08 -0.74 16 17 N -0.92 -27.28 12.42 55.49 0.69 -26.59 16 18 Si 1.06 25.49 29.99 -169.99 -5.10 20.39 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 C 0.17 3.57 3.05 -67.37 -0.21 3.37 16 23 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 24 C -0.13 -2.64 7.82 37.16 0.29 -2.35 16 25 C 0.49 6.88 7.93 -12.69 -0.10 6.78 16 26 O -0.48 -8.71 16.40 -15.43 -0.25 -8.96 16 27 N -0.59 -4.72 5.29 -9.45 -0.05 -4.77 16 28 H 0.42 2.10 8.64 -40.82 -0.35 1.75 16 29 C 0.15 0.89 6.78 -81.98 -0.56 0.33 16 30 C -0.13 -0.13 8.83 36.00 0.32 0.18 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.14 6.43 -51.93 -0.33 -0.19 16 34 H 0.40 5.91 7.96 -40.82 -0.33 5.59 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 2.15 6.31 -51.93 -0.33 1.82 16 40 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 41 H 0.27 8.05 6.77 -40.82 -0.28 7.77 16 42 H 0.05 1.16 7.46 -51.93 -0.39 0.78 16 43 H 0.04 0.66 7.82 -51.93 -0.41 0.26 16 44 H 0.06 1.33 7.60 -51.93 -0.39 0.94 16 45 H 0.08 -0.02 7.90 -51.93 -0.41 -0.43 16 46 H 0.10 -0.01 8.09 -51.93 -0.42 -0.43 16 47 H 0.10 -0.01 7.37 -51.93 -0.38 -0.39 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -36.86 375.56 -8.74 -45.60 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.90 Total: 3.65 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -1.79 Total: 7.63 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.13 Total: -62.57 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.48 Total: -20.37 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.86 -8.74 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds