Wall clock time and date at job start Tue Mar 31 2020 17:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32179 * 119.14418 * 2 1 4 4 C 1.32357 * 120.60283 * 180.26839 * 3 2 1 5 5 C 1.47502 * 120.50802 * 179.74176 * 4 3 2 6 6 O 1.21599 * 120.00060 * 179.72106 * 5 4 3 7 7 N 1.34783 * 119.99805 * 359.71614 * 5 4 3 8 8 C 1.46502 * 119.99579 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.50136 * 35.07002 * 8 7 5 10 10 C 1.53035 * 109.49847 * 274.99786 * 8 7 5 11 11 C 1.53041 * 109.54001 * 178.65426 * 10 8 7 12 12 C 1.53193 * 109.30945 * 61.36932 * 11 10 8 13 13 N 1.46932 * 108.77428 * 305.36377 * 12 11 10 14 14 C 1.36928 * 120.62883 * 233.58787 * 13 12 11 15 15 H 1.08001 * 119.99855 * 152.58140 * 14 13 12 16 16 C 1.38816 * 120.00302 * 332.58271 * 14 13 12 17 17 N 1.31625 * 119.99687 * 334.09603 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 154.10048 * 16 14 13 19 19 H 1.48496 * 109.47183 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47092 * 300.00089 * 18 16 14 21 21 H 1.48501 * 109.47421 * 59.99658 * 18 16 14 22 22 C 1.46921 * 118.73572 * 53.86298 * 13 12 11 23 23 H 1.09001 * 109.58789 * 65.93044 * 22 13 12 24 24 C 1.53003 * 109.58308 * 186.35070 * 22 13 12 25 25 C 1.46676 * 118.98321 * 359.46321 * 4 3 2 26 26 O 1.21860 * 120.78212 * 180.29892 * 25 4 3 27 27 N 1.35143 * 118.43390 * 0.27614 * 25 4 3 28 28 H 0.97003 * 120.37279 * 179.97438 * 27 25 4 29 29 C 1.34905 * 119.26177 * 0.02562 * 27 25 4 30 30 C 1.50698 * 119.49770 * 179.97438 * 29 27 25 31 31 H 1.09007 * 109.47034 * 270.25386 * 1 2 3 32 32 H 1.09008 * 109.47228 * 30.25182 * 1 2 3 33 33 H 1.08999 * 109.47311 * 150.25579 * 1 2 3 34 34 H 0.96996 * 119.99912 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.45942 * 58.63720 * 10 8 7 36 36 H 1.08998 * 109.45256 * 298.67238 * 10 8 7 37 37 H 1.08999 * 109.49582 * 301.41532 * 11 10 8 38 38 H 1.09001 * 109.52690 * 181.33441 * 11 10 8 39 39 H 1.09000 * 109.58243 * 185.58397 * 12 11 10 40 40 H 1.08998 * 109.70395 * 65.22183 * 12 11 10 41 41 H 0.96997 * 120.00244 * 354.51952 * 17 16 14 42 42 H 1.08994 * 109.47278 * 60.00082 * 24 22 13 43 43 H 1.09006 * 109.46769 * 180.02562 * 24 22 13 44 44 H 1.08994 * 109.47175 * 299.99845 * 24 22 13 45 45 H 1.09001 * 109.47574 * 359.97438 * 30 29 27 46 46 H 1.09000 * 109.47067 * 119.99948 * 30 29 27 47 47 H 1.09001 * 109.47357 * 239.99888 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1881 -0.0053 5 6 4.1900 2.4776 -0.0111 6 8 5.4058 2.4978 -0.0108 7 7 3.4967 3.6335 -0.0167 8 6 4.2081 4.9142 -0.0229 9 1 5.1199 4.8211 -0.6128 10 6 4.5660 5.3067 1.4123 11 6 5.3386 6.6277 1.4042 12 6 4.4546 7.7279 0.8083 13 7 3.9872 7.2939 -0.5154 14 6 4.1777 8.0853 -1.6165 15 1 4.2570 7.6375 -2.5961 16 6 4.2688 9.4631 -1.4736 17 7 3.6930 10.0581 -0.4504 18 14 5.2083 10.4726 -2.7335 19 1 5.1563 11.9079 -2.3562 20 1 6.6227 10.0218 -2.7739 21 1 4.5925 10.2907 -4.0725 22 6 3.3063 5.9974 -0.6340 23 1 2.3578 6.0324 -0.0980 24 6 3.0532 5.6842 -2.1101 25 6 4.2170 -0.0764 0.0008 26 8 5.4355 -0.0836 0.0016 27 7 3.5184 -1.2333 0.0059 28 1 3.9814 -2.0857 0.0096 29 6 2.1701 -1.1895 0.0048 30 6 1.3859 -2.4763 0.0099 31 1 -0.3633 0.0046 1.0277 32 1 -0.3634 0.8878 -0.5178 33 1 -0.3634 -0.8922 -0.5098 34 1 2.5269 3.6173 -0.0165 35 1 5.1840 4.5274 1.8585 36 1 3.6525 5.4238 1.9952 37 1 6.2398 6.5184 0.8008 38 1 5.6140 6.8951 2.4244 39 1 5.0322 8.6468 0.7086 40 1 3.5978 7.9035 1.4588 41 1 3.1391 9.5462 0.1595 42 1 4.0042 5.6439 -2.6412 43 1 2.5476 4.7223 -2.1959 44 1 2.4271 6.4634 -2.5447 45 1 2.0743 -3.3214 0.0137 46 1 0.7574 -2.5152 0.8997 47 1 0.7586 -2.5232 -0.8803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993496667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:35 Heat of formation + Delta-G solvation = -41.461696 kcal Electronic energy + Delta-G solvation = -29553.315702 eV Core-core repulsion = 25542.782716 eV Total energy + Delta-G solvation = -4010.532986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.90106 -40.98308 -39.41094 -39.06121 -36.61344 -36.07748 -34.42899 -34.05586 -33.42381 -31.02120 -29.89820 -28.21130 -27.60967 -26.76488 -25.61189 -24.72684 -23.36466 -22.55119 -21.75875 -21.14818 -19.93493 -19.52733 -18.88811 -18.02875 -17.39449 -17.30523 -16.95673 -16.37350 -15.99995 -15.94181 -15.47019 -15.34088 -15.06876 -14.96840 -14.93977 -14.86271 -14.27856 -14.08509 -13.87009 -13.81829 -13.51624 -13.05723 -12.99000 -12.81775 -12.76223 -12.71163 -12.56303 -12.42153 -12.36614 -12.07513 -11.93428 -11.91005 -11.82559 -11.72368 -11.40790 -11.07645 -10.57322 -10.44203 -10.09950 -9.10276 -8.90956 -8.20133 -5.33497 -0.98395 0.48968 1.22309 1.52453 1.59180 1.66767 1.85111 2.07305 2.53184 2.67477 2.90132 2.98591 3.24374 3.39972 3.49359 3.72637 3.78601 3.88728 3.96766 4.07073 4.22706 4.36058 4.50234 4.53092 4.63707 4.64730 4.68859 4.73414 4.82118 4.90168 4.91773 4.95786 5.00185 5.06866 5.08031 5.17019 5.20467 5.25668 5.26142 5.33068 5.35851 5.50663 5.54460 5.93448 6.30683 6.44744 6.52605 6.62797 7.07132 7.18394 7.81620 8.25058 9.05990 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.002738 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.662219 B =10224.894279 C =10593.228377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.049 4.049 3 N -0.340 5.340 4 C -0.063 4.063 5 C 0.577 3.423 6 O -0.565 6.565 7 N -0.690 5.690 8 C 0.147 3.853 9 H 0.055 0.945 10 C -0.110 4.110 11 C -0.124 4.124 12 C 0.155 3.845 13 N -0.607 5.607 14 C -0.347 4.347 15 H 0.058 0.942 16 C -0.073 4.073 17 N -0.942 5.942 18 Si 1.108 2.892 19 H -0.291 1.291 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.169 3.831 23 H 0.037 0.963 24 C -0.124 4.124 25 C 0.490 3.510 26 O -0.542 6.542 27 N -0.563 5.563 28 H 0.438 0.562 29 C 0.202 3.798 30 C -0.131 4.131 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.415 0.585 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.015 0.985 41 H 0.256 0.744 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.130 0.870 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 -30.731 2.606 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.180 4.180 3 N -0.058 5.058 4 C -0.223 4.223 5 C 0.363 3.637 6 O -0.442 6.442 7 N -0.341 5.341 8 C 0.040 3.960 9 H 0.073 0.927 10 C -0.148 4.148 11 C -0.163 4.163 12 C 0.029 3.971 13 N -0.332 5.332 14 C -0.477 4.477 15 H 0.076 0.924 16 C -0.270 4.270 17 N -0.584 5.584 18 Si 0.934 3.066 19 H -0.218 1.218 20 H -0.213 1.213 21 H -0.201 1.201 22 C 0.063 3.937 23 H 0.055 0.945 24 C -0.181 4.181 25 C 0.285 3.715 26 O -0.419 6.419 27 N -0.198 5.198 28 H 0.282 0.718 29 C 0.083 3.917 30 C -0.188 4.188 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.148 0.852 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.225 -28.349 2.191 30.569 hybrid contribution 0.227 -2.021 0.472 2.087 sum -10.998 -30.370 2.663 32.409 Atomic orbital electron populations 1.20715 0.83784 1.05232 1.04405 1.20989 0.99812 0.85176 1.12054 1.67422 1.07207 1.31952 0.99175 1.23069 0.89602 0.92577 1.17081 1.17506 0.86189 0.83357 0.76612 1.90841 1.14710 1.87390 1.51266 1.45631 1.10917 1.04048 1.73549 1.21445 0.95649 0.82117 0.96751 0.92721 1.21694 1.00295 0.96738 0.96118 1.21925 0.98399 0.95278 1.00737 1.20878 0.94842 0.95861 0.85518 1.44354 1.66131 1.17764 1.04959 1.20163 1.48690 0.90136 0.88694 0.92396 1.27000 1.00778 0.95665 1.03532 1.70882 1.30681 1.38183 1.18638 0.82934 0.75536 0.74474 0.73704 1.21751 1.21348 1.20104 1.20751 0.92530 0.84752 0.95700 0.94520 1.21680 1.00699 1.00515 0.95209 1.19053 0.87844 0.85152 0.79466 1.91028 1.13675 1.86160 1.51023 1.43744 1.07409 1.11430 1.57221 0.71780 1.22554 0.82453 1.01073 0.85634 1.21615 1.00895 0.88473 1.07779 0.89391 0.91149 0.86929 0.74784 0.92842 0.91100 0.93702 0.90253 0.93301 0.96703 0.93426 0.94393 0.91033 0.93097 0.88065 0.85209 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 9.65 71.23 0.69 0.33 16 2 C -0.05 -0.61 6.70 42.03 0.28 -0.32 16 3 N -0.34 -7.53 9.57 -169.25 -1.62 -9.15 16 4 C -0.06 -1.88 6.96 43.71 0.30 -1.57 16 5 C 0.58 21.96 7.77 86.68 0.67 22.63 16 6 O -0.56 -26.84 15.17 15.55 0.24 -26.60 16 7 N -0.69 -23.77 4.60 -444.66 -2.04 -25.82 16 8 C 0.15 5.92 2.01 45.21 0.09 6.01 16 9 H 0.05 2.60 7.58 -2.39 -0.02 2.58 16 10 C -0.11 -4.25 5.46 30.62 0.17 -4.08 16 11 C -0.12 -5.16 6.08 30.67 0.19 -4.97 16 12 C 0.15 7.59 4.71 86.36 0.41 8.00 16 13 N -0.61 -31.18 2.85 -674.41 -1.92 -33.10 16 14 C -0.35 -19.61 8.52 84.04 0.72 -18.90 16 15 H 0.06 3.27 6.24 -2.91 -0.02 3.25 16 16 C -0.07 -4.22 4.66 84.86 0.40 -3.83 16 17 N -0.94 -57.80 12.42 21.65 0.27 -57.53 16 18 Si 1.11 52.55 29.99 68.60 2.06 54.60 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 C 0.17 7.24 3.05 45.12 0.14 7.38 16 23 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 24 C -0.12 -4.96 7.82 71.98 0.56 -4.40 16 25 C 0.49 13.83 7.93 86.39 0.68 14.51 16 26 O -0.54 -20.85 16.40 14.72 0.24 -20.61 16 27 N -0.56 -7.54 5.29 -301.77 -1.60 -9.14 16 28 H 0.44 2.94 8.64 -92.71 -0.80 2.14 16 29 C 0.20 1.41 6.78 41.61 0.28 1.69 16 30 C -0.13 0.70 8.83 71.24 0.63 1.33 16 31 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.11 -0.37 6.43 -2.39 -0.02 -0.39 16 34 H 0.41 12.17 7.96 -92.71 -0.74 11.44 16 35 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.05 2.70 6.31 -2.39 -0.02 2.69 16 40 H 0.02 0.74 7.88 -2.39 -0.02 0.72 16 41 H 0.26 15.90 6.77 -92.71 -0.63 15.27 16 42 H 0.04 1.63 7.46 -2.39 -0.02 1.61 16 43 H 0.07 2.37 7.82 -2.38 -0.02 2.35 16 44 H 0.05 2.15 7.60 -2.39 -0.02 2.13 16 45 H 0.10 -0.82 7.90 -2.39 -0.02 -0.84 16 46 H 0.13 -1.11 8.09 -2.39 -0.02 -1.13 16 47 H 0.13 -1.15 7.37 -2.39 -0.02 -1.17 16 Total: -1.00 -89.87 375.56 1.45 -88.42 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -0.38 Total: 15.09 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 6.21 Total: 23.83 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -6.91 Total: -134.73 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: 0.48 Total: -47.21 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.06 Total: 54.60 kcal Total: -89.87 1.45 -88.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.956 kcal (2) G-P(sol) polarization free energy of solvation -89.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds