Wall clock time and date at job start Tue Mar 31 2020 17:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32167 * 119.13993 * 2 1 4 4 C 1.32368 * 120.60362 * 180.30723 * 3 2 1 5 5 C 1.47494 * 120.50946 * 179.69399 * 4 3 2 6 6 O 1.21598 * 119.99837 * 179.72595 * 5 4 3 7 7 N 1.34776 * 120.00360 * 359.72376 * 5 4 3 8 8 C 1.46502 * 120.00237 * 180.02562 * 7 5 4 9 9 H 1.08992 * 109.49563 * 324.93243 * 8 7 5 10 10 C 1.53041 * 109.49627 * 84.99796 * 8 7 5 11 11 C 1.53042 * 109.53755 * 58.61829 * 10 8 7 12 12 C 1.53197 * 109.31056 * 61.36512 * 11 10 8 13 13 N 1.46924 * 108.77415 * 305.36136 * 12 11 10 14 14 C 1.36943 * 120.62995 * 233.58592 * 13 12 11 15 15 H 1.07999 * 119.99498 * 150.99752 * 14 13 12 16 16 C 1.38810 * 120.00156 * 330.99647 * 14 13 12 17 17 N 1.31620 * 119.99849 * 344.97838 * 16 14 13 18 18 Si 1.86793 * 119.99959 * 164.98010 * 16 14 13 19 19 H 1.48502 * 109.47084 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47204 * 299.99556 * 18 16 14 21 21 H 1.48493 * 109.47556 * 59.99784 * 18 16 14 22 22 C 1.46929 * 118.73776 * 53.86514 * 13 12 11 23 23 H 1.09001 * 109.58656 * 65.92557 * 22 13 12 24 24 C 1.53003 * 109.58379 * 186.34982 * 22 13 12 25 25 C 1.46676 * 118.97792 * 359.42115 * 4 3 2 26 26 O 1.21854 * 120.78175 * 180.29837 * 25 4 3 27 27 N 1.35151 * 118.43338 * 0.27174 * 25 4 3 28 28 H 0.97003 * 120.36781 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.26367 * 0.02562 * 27 25 4 30 30 C 1.50700 * 119.50080 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.47602 * 270.29838 * 1 2 3 32 32 H 1.08996 * 109.47242 * 30.30427 * 1 2 3 33 33 H 1.09007 * 109.46836 * 150.30211 * 1 2 3 34 34 H 0.97006 * 119.99352 * 359.97438 * 7 5 4 35 35 H 1.08990 * 109.46171 * 298.60144 * 10 8 7 36 36 H 1.08995 * 109.44846 * 178.62858 * 10 8 7 37 37 H 1.08998 * 109.49938 * 301.41676 * 11 10 8 38 38 H 1.09004 * 109.52569 * 181.32617 * 11 10 8 39 39 H 1.09003 * 109.58227 * 185.57834 * 12 11 10 40 40 H 1.08999 * 109.70422 * 65.22304 * 12 11 10 41 41 H 0.96995 * 120.00006 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47317 * 59.99934 * 24 22 13 43 43 H 1.09002 * 109.46620 * 179.97438 * 24 22 13 44 44 H 1.08999 * 109.47059 * 299.99874 * 24 22 13 45 45 H 1.09007 * 109.47195 * 359.97438 * 30 29 27 46 46 H 1.08996 * 109.47585 * 119.99131 * 30 29 27 47 47 H 1.09002 * 109.46888 * 239.99473 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1899 2.4776 -0.0129 6 8 5.4057 2.4979 -0.0134 7 7 3.4967 3.6335 -0.0185 8 6 4.2080 4.9142 -0.0258 9 1 5.1202 4.8271 0.5643 10 6 4.5649 5.2921 -1.4652 11 6 3.2870 5.3825 -2.3025 12 6 2.3802 6.4747 -1.7266 13 7 2.1501 6.1959 -0.3025 14 6 0.8772 6.1198 0.1967 15 1 0.6686 5.4916 1.0501 16 6 -0.1449 6.8500 -0.3940 17 7 0.1415 7.8278 -1.2273 18 14 -1.9267 6.4449 -0.0064 19 1 -2.8182 7.3637 -0.7590 20 1 -2.2129 5.0425 -0.4020 21 1 -2.1657 6.6070 1.4502 22 6 3.3117 6.0066 0.5770 23 1 3.8692 6.9402 0.6522 24 6 2.8381 5.5753 1.9665 25 6 4.2170 -0.0763 0.0001 26 8 5.4355 -0.0835 0.0002 27 7 3.5184 -1.2333 0.0062 28 1 3.9814 -2.0857 0.0100 29 6 2.1702 -1.1895 0.0059 30 6 1.3859 -2.4763 0.0133 31 1 -0.3634 0.0054 1.0276 32 1 -0.3633 0.8872 -0.5185 33 1 -0.3633 -0.8928 -0.5092 34 1 2.5268 3.6172 -0.0185 35 1 5.2226 4.5325 -1.8876 36 1 5.0724 6.2566 -1.4721 37 1 2.7659 4.4255 -2.2756 38 1 3.5433 5.6285 -3.3330 39 1 1.4280 6.4764 -2.2571 40 1 2.8610 7.4469 -1.8356 41 1 -0.5727 8.3383 -1.6398 42 1 2.2866 4.6384 1.8878 43 1 3.7012 5.4350 2.6172 44 1 2.1890 6.3450 2.3842 45 1 2.0744 -3.3214 0.0177 46 1 0.7582 -2.5142 0.9035 47 1 0.7580 -2.5242 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993496669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:42 Heat of formation + Delta-G solvation = -9.975845 kcal Electronic energy + Delta-G solvation = -30424.626438 eV Core-core repulsion = 26415.458781 eV Total energy + Delta-G solvation = -4009.167657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85831 -39.45387 -38.07608 -37.37061 -35.54514 -33.81754 -33.29375 -32.25590 -31.55788 -29.72422 -29.00946 -26.96430 -26.07247 -24.93723 -24.81119 -23.43059 -21.87380 -20.80268 -20.46823 -18.96604 -18.49940 -18.41919 -16.85808 -16.39776 -16.31349 -15.93798 -15.27729 -14.74553 -14.65109 -14.29639 -14.21398 -13.96590 -13.81801 -13.50404 -13.47068 -13.23418 -13.15508 -12.95225 -12.82706 -12.48009 -12.21683 -11.94430 -11.77275 -11.47452 -11.31422 -11.17834 -11.13848 -10.90622 -10.64815 -10.54107 -10.44555 -10.05984 -9.98238 -9.93070 -9.56589 -9.28454 -9.20775 -8.47327 -8.38030 -8.08723 -6.60897 -5.74606 -3.19293 0.02923 1.54436 2.23358 2.81472 3.39072 3.45167 3.45359 3.46802 3.76137 3.79770 4.08350 4.19589 4.41618 4.50807 4.80826 4.99985 5.05980 5.19558 5.36494 5.39262 5.40018 5.49344 5.65255 5.68566 5.76757 5.84713 5.91401 6.05940 6.16667 6.20014 6.22218 6.31394 6.42455 6.51093 6.62103 6.76811 6.78266 6.86780 7.02093 7.06455 7.19774 7.40286 7.46972 7.63314 7.74426 7.84601 8.17279 8.48754 8.72895 9.24760 9.87762 10.45041 11.33274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.004466 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.403383 B = 6268.239999 C = 7935.726278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.023 4.023 3 N -0.346 5.346 4 C 0.015 3.985 5 C 0.573 3.427 6 O -0.524 6.524 7 N -0.679 5.679 8 C 0.133 3.867 9 H 0.077 0.923 10 C -0.121 4.121 11 C -0.141 4.141 12 C 0.172 3.828 13 N -0.586 5.586 14 C -0.250 4.250 15 H 0.070 0.930 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.900 3.100 19 H -0.293 1.293 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.161 3.839 23 H 0.041 0.959 24 C -0.137 4.137 25 C 0.495 3.505 26 O -0.486 6.486 27 N -0.588 5.588 28 H 0.418 0.582 29 C 0.143 3.857 30 C -0.125 4.125 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.087 0.913 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.054 0.946 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -19.682 1.822 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.149 4.149 3 N -0.063 5.063 4 C -0.154 4.154 5 C 0.356 3.644 6 O -0.399 6.399 7 N -0.332 5.332 8 C 0.027 3.973 9 H 0.095 0.905 10 C -0.160 4.160 11 C -0.180 4.180 12 C 0.046 3.954 13 N -0.309 5.309 14 C -0.380 4.380 15 H 0.088 0.912 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.219 1.219 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.053 3.947 23 H 0.059 0.941 24 C -0.194 4.194 25 C 0.287 3.713 26 O -0.358 6.358 27 N -0.224 5.224 28 H 0.259 0.741 29 C 0.028 3.972 30 C -0.183 4.183 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.106 0.894 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.032 -18.710 1.750 18.820 hybrid contribution -0.823 -1.339 0.056 1.573 sum 0.209 -20.049 1.806 20.132 Atomic orbital electron populations 1.20568 0.86889 1.03921 1.03208 1.20179 0.98002 0.85521 1.11219 1.67621 1.08394 1.29408 1.00857 1.24112 0.88840 0.94119 1.08309 1.17073 0.86553 0.82317 0.78480 1.90842 1.12381 1.86626 1.50034 1.45799 1.11697 1.04141 1.71518 1.21682 0.95584 0.83195 0.96864 0.90464 1.21777 0.98002 1.00600 0.95624 1.22147 0.96678 1.01649 0.97513 1.20806 0.98134 0.92130 0.84327 1.44171 1.00590 1.83241 1.02924 1.19121 0.83918 1.20491 1.14429 0.91226 1.25070 0.98344 0.95711 1.00285 1.70009 1.31164 1.20218 1.33258 0.86415 0.85192 0.77636 0.77764 1.21862 1.20988 1.21022 1.20804 0.89678 0.93719 0.90486 0.94116 1.21793 0.99977 1.01877 0.95790 1.19148 0.88440 0.83991 0.79695 1.91042 1.11442 1.85306 1.47988 1.43750 1.06336 1.11864 1.60412 0.74142 1.21509 0.83488 0.98917 0.93248 1.21177 1.00413 0.91361 1.05317 0.90638 0.89675 0.90884 0.74453 0.93058 0.91821 0.92792 0.93538 0.89442 0.96452 0.93706 0.92652 0.94215 0.91750 0.90509 0.88203 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.65 36.01 0.35 -0.36 16 2 C -0.02 -0.25 6.70 -83.18 -0.56 -0.81 16 3 N -0.35 -5.11 9.57 -4.85 -0.05 -5.16 16 4 C 0.02 0.25 6.96 -80.46 -0.56 -0.31 16 5 C 0.57 11.12 7.77 -12.49 -0.10 11.02 16 6 O -0.52 -11.67 15.17 -15.20 -0.23 -11.91 16 7 N -0.68 -12.81 3.47 -54.53 -0.19 -13.00 16 8 C 0.13 2.54 2.33 -67.59 -0.16 2.38 16 9 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 10 C -0.12 -2.29 5.57 -26.69 -0.15 -2.44 16 11 C -0.14 -2.80 5.93 -26.61 -0.16 -2.96 16 12 C 0.17 4.00 5.28 -3.71 -0.02 3.98 16 13 N -0.59 -13.77 2.64 -164.52 -0.43 -14.20 16 14 C -0.25 -6.35 8.59 -15.06 -0.13 -6.48 16 15 H 0.07 1.73 6.22 -52.49 -0.33 1.40 16 16 C 0.00 0.12 4.96 -17.43 -0.09 0.04 16 17 N -0.90 -25.31 11.14 55.49 0.62 -24.70 16 18 Si 0.90 20.86 29.58 -169.99 -5.03 15.83 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.16 3.28 3.22 -67.37 -0.22 3.06 16 23 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.14 -2.58 7.75 37.16 0.29 -2.29 16 25 C 0.50 7.62 7.93 -12.69 -0.10 7.52 16 26 O -0.49 -9.28 16.40 -15.43 -0.25 -9.53 16 27 N -0.59 -5.67 5.29 -9.46 -0.05 -5.72 16 28 H 0.42 2.67 8.64 -40.82 -0.35 2.32 16 29 C 0.14 1.14 6.78 -81.98 -0.56 0.58 16 30 C -0.13 -0.37 8.83 36.01 0.32 -0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.35 6.43 -51.93 -0.33 0.01 16 34 H 0.42 8.14 7.16 -40.82 -0.29 7.84 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.11 7.53 -51.93 -0.39 0.72 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.05 1.05 6.42 -51.93 -0.33 0.72 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 45 H 0.08 0.10 7.90 -51.93 -0.41 -0.31 16 46 H 0.10 0.18 8.09 -51.93 -0.42 -0.24 16 47 H 0.10 0.19 7.37 -51.93 -0.38 -0.20 16 LS Contribution 373.28 15.07 5.63 5.63 Total: -1.00 -34.13 373.28 -8.68 -42.81 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.86 Total: 7.04 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -1.83 Total: 12.90 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: -0.10 Total: -62.76 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -0.48 Total: -21.44 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.13 -8.68 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.835 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds