Wall clock time and date at job start Tue Mar 31 2020 17:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32167 * 119.13993 * 2 1 4 4 C 1.32368 * 120.60362 * 180.30723 * 3 2 1 5 5 C 1.47494 * 120.50946 * 179.69399 * 4 3 2 6 6 O 1.21598 * 119.99837 * 179.72595 * 5 4 3 7 7 N 1.34776 * 120.00360 * 359.72376 * 5 4 3 8 8 C 1.46502 * 120.00237 * 180.02562 * 7 5 4 9 9 H 1.08992 * 109.49563 * 324.93243 * 8 7 5 10 10 C 1.53041 * 109.49627 * 84.99796 * 8 7 5 11 11 C 1.53042 * 109.53755 * 58.61829 * 10 8 7 12 12 C 1.53197 * 109.31056 * 61.36512 * 11 10 8 13 13 N 1.46924 * 108.77415 * 305.36136 * 12 11 10 14 14 C 1.36943 * 120.62995 * 233.58592 * 13 12 11 15 15 H 1.07999 * 119.99498 * 150.99752 * 14 13 12 16 16 C 1.38810 * 120.00156 * 330.99647 * 14 13 12 17 17 N 1.31620 * 119.99849 * 344.97838 * 16 14 13 18 18 Si 1.86793 * 119.99959 * 164.98010 * 16 14 13 19 19 H 1.48502 * 109.47084 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47204 * 299.99556 * 18 16 14 21 21 H 1.48493 * 109.47556 * 59.99784 * 18 16 14 22 22 C 1.46929 * 118.73776 * 53.86514 * 13 12 11 23 23 H 1.09001 * 109.58656 * 65.92557 * 22 13 12 24 24 C 1.53003 * 109.58379 * 186.34982 * 22 13 12 25 25 C 1.46676 * 118.97792 * 359.42115 * 4 3 2 26 26 O 1.21854 * 120.78175 * 180.29837 * 25 4 3 27 27 N 1.35151 * 118.43338 * 0.27174 * 25 4 3 28 28 H 0.97003 * 120.36781 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.26367 * 0.02562 * 27 25 4 30 30 C 1.50700 * 119.50080 * 180.02562 * 29 27 25 31 31 H 1.09000 * 109.47602 * 270.29838 * 1 2 3 32 32 H 1.08996 * 109.47242 * 30.30427 * 1 2 3 33 33 H 1.09007 * 109.46836 * 150.30211 * 1 2 3 34 34 H 0.97006 * 119.99352 * 359.97438 * 7 5 4 35 35 H 1.08990 * 109.46171 * 298.60144 * 10 8 7 36 36 H 1.08995 * 109.44846 * 178.62858 * 10 8 7 37 37 H 1.08998 * 109.49938 * 301.41676 * 11 10 8 38 38 H 1.09004 * 109.52569 * 181.32617 * 11 10 8 39 39 H 1.09003 * 109.58227 * 185.57834 * 12 11 10 40 40 H 1.08999 * 109.70422 * 65.22304 * 12 11 10 41 41 H 0.96995 * 120.00006 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47317 * 59.99934 * 24 22 13 43 43 H 1.09002 * 109.46620 * 179.97438 * 24 22 13 44 44 H 1.08999 * 109.47059 * 299.99874 * 24 22 13 45 45 H 1.09007 * 109.47195 * 359.97438 * 30 29 27 46 46 H 1.08996 * 109.47585 * 119.99131 * 30 29 27 47 47 H 1.09002 * 109.46888 * 239.99473 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0061 5 6 4.1899 2.4776 -0.0129 6 8 5.4057 2.4979 -0.0134 7 7 3.4967 3.6335 -0.0185 8 6 4.2080 4.9142 -0.0258 9 1 5.1202 4.8271 0.5643 10 6 4.5649 5.2921 -1.4652 11 6 3.2870 5.3825 -2.3025 12 6 2.3802 6.4747 -1.7266 13 7 2.1501 6.1959 -0.3025 14 6 0.8772 6.1198 0.1967 15 1 0.6686 5.4916 1.0501 16 6 -0.1449 6.8500 -0.3940 17 7 0.1415 7.8278 -1.2273 18 14 -1.9267 6.4449 -0.0064 19 1 -2.8182 7.3637 -0.7590 20 1 -2.2129 5.0425 -0.4020 21 1 -2.1657 6.6070 1.4502 22 6 3.3117 6.0066 0.5770 23 1 3.8692 6.9402 0.6522 24 6 2.8381 5.5753 1.9665 25 6 4.2170 -0.0763 0.0001 26 8 5.4355 -0.0835 0.0002 27 7 3.5184 -1.2333 0.0062 28 1 3.9814 -2.0857 0.0100 29 6 2.1702 -1.1895 0.0059 30 6 1.3859 -2.4763 0.0133 31 1 -0.3634 0.0054 1.0276 32 1 -0.3633 0.8872 -0.5185 33 1 -0.3633 -0.8928 -0.5092 34 1 2.5268 3.6172 -0.0185 35 1 5.2226 4.5325 -1.8876 36 1 5.0724 6.2566 -1.4721 37 1 2.7659 4.4255 -2.2756 38 1 3.5433 5.6285 -3.3330 39 1 1.4280 6.4764 -2.2571 40 1 2.8610 7.4469 -1.8356 41 1 -0.5727 8.3383 -1.6398 42 1 2.2866 4.6384 1.8878 43 1 3.7012 5.4350 2.6172 44 1 2.1890 6.3450 2.3842 45 1 2.0744 -3.3214 0.0177 46 1 0.7582 -2.5142 0.9035 47 1 0.7580 -2.5242 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993496669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:40 Heat of formation + Delta-G solvation = -33.894826 kcal Electronic energy + Delta-G solvation = -30425.663643 eV Core-core repulsion = 26415.458781 eV Total energy + Delta-G solvation = -4010.204862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.85854 -40.95702 -39.26650 -38.89169 -36.56404 -35.55124 -34.23096 -33.85959 -33.28729 -31.19990 -29.90866 -28.14413 -27.56028 -26.79682 -25.58708 -24.64047 -23.48183 -22.39184 -21.90269 -20.36047 -19.81208 -19.47968 -18.21579 -18.00741 -17.35504 -17.09292 -17.03401 -16.39402 -16.08619 -15.67235 -15.47174 -15.06030 -15.02235 -14.89654 -14.68508 -14.53499 -14.22539 -14.05008 -13.83904 -13.78522 -13.53664 -12.94713 -12.85949 -12.77787 -12.72206 -12.66801 -12.41472 -12.36574 -12.33473 -12.31671 -12.16134 -11.90280 -11.66828 -11.37461 -11.27949 -11.01907 -10.47090 -10.43014 -9.93488 -9.05913 -8.56703 -7.75736 -5.22389 -0.92899 0.52200 1.28315 1.54269 1.55767 1.60451 1.62049 2.26198 2.58888 2.60601 2.97934 3.06543 3.39880 3.42616 3.62181 3.76492 3.93088 4.05398 4.08143 4.21349 4.39846 4.54687 4.58076 4.64898 4.67632 4.70290 4.79284 4.89789 4.93734 4.95520 4.99263 5.05073 5.08827 5.13169 5.22379 5.22872 5.28071 5.35091 5.46631 5.51169 5.58053 5.66106 5.78432 5.83331 6.40911 6.49369 6.58587 6.75109 7.24021 7.29053 7.93855 8.47880 9.30743 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011537 B = 0.004466 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.403383 B = 6268.239999 C = 7935.726278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.051 4.051 3 N -0.348 5.348 4 C -0.061 4.061 5 C 0.574 3.426 6 O -0.566 6.566 7 N -0.678 5.678 8 C 0.139 3.861 9 H 0.078 0.922 10 C -0.115 4.115 11 C -0.126 4.126 12 C 0.181 3.819 13 N -0.596 5.596 14 C -0.245 4.245 15 H 0.076 0.924 16 C -0.049 4.049 17 N -0.937 5.937 18 Si 0.961 3.039 19 H -0.302 1.302 20 H -0.273 1.273 21 H -0.278 1.278 22 C 0.159 3.841 23 H 0.037 0.963 24 C -0.127 4.127 25 C 0.493 3.507 26 O -0.539 6.539 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.200 3.800 30 C -0.129 4.129 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.058 0.942 40 H -0.002 1.002 41 H 0.246 0.754 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.104 0.896 46 H 0.128 0.872 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -23.889 2.479 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.181 4.181 3 N -0.066 5.066 4 C -0.222 4.222 5 C 0.360 3.640 6 O -0.445 6.445 7 N -0.329 5.329 8 C 0.033 3.967 9 H 0.096 0.904 10 C -0.154 4.154 11 C -0.165 4.165 12 C 0.055 3.945 13 N -0.320 5.320 14 C -0.375 4.375 15 H 0.094 0.906 16 C -0.244 4.244 17 N -0.583 5.583 18 Si 0.789 3.211 19 H -0.229 1.229 20 H -0.199 1.199 21 H -0.204 1.204 22 C 0.052 3.948 23 H 0.055 0.945 24 C -0.184 4.184 25 C 0.288 3.712 26 O -0.416 6.416 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.081 3.919 30 C -0.186 4.186 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.133 0.867 34 H 0.251 0.749 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.016 0.984 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.146 0.854 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.945 -22.925 2.426 23.073 hybrid contribution -0.384 -0.331 -0.122 0.522 sum -1.330 -23.256 2.305 23.408 Atomic orbital electron populations 1.20701 0.84506 1.04854 1.04252 1.20899 0.99571 0.85389 1.12240 1.67492 1.07800 1.32064 0.99228 1.23308 0.89440 0.93224 1.16265 1.17453 0.86229 0.83308 0.77037 1.90788 1.14060 1.87427 1.52180 1.45702 1.11213 1.04073 1.71942 1.21514 0.95196 0.83163 0.96832 0.90391 1.21722 0.97339 1.01011 0.95322 1.21953 0.96315 0.99801 0.98404 1.20575 0.97045 0.92343 0.84497 1.44333 1.01066 1.83138 1.03431 1.19415 0.84723 1.19484 1.13909 0.90618 1.25769 1.01923 0.95936 1.00817 1.70175 1.31674 1.21582 1.34877 0.85441 0.80694 0.77443 0.77483 1.22888 1.19917 1.20412 1.20911 0.88821 0.94041 0.90995 0.94506 1.21690 1.00608 1.01075 0.95075 1.18985 0.87828 0.84988 0.79426 1.91001 1.13358 1.86149 1.51068 1.43685 1.07202 1.11431 1.57471 0.71729 1.22451 0.82597 1.00751 0.86069 1.21591 1.00891 0.88486 1.07633 0.89504 0.92122 0.86665 0.74909 0.93152 0.90908 0.93551 0.91894 0.92339 0.98416 0.94504 0.92947 0.91924 0.92946 0.87764 0.85400 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.65 71.24 0.69 -0.34 16 2 C -0.05 -0.94 6.70 42.03 0.28 -0.66 16 3 N -0.35 -10.15 9.57 -169.25 -1.62 -11.77 16 4 C -0.06 -2.09 6.96 43.71 0.30 -1.79 16 5 C 0.57 23.40 7.77 86.68 0.67 24.07 16 6 O -0.57 -26.69 15.17 15.55 0.24 -26.45 16 7 N -0.68 -26.51 3.47 -444.68 -1.54 -28.05 16 8 C 0.14 5.47 2.33 45.21 0.11 5.57 16 9 H 0.08 3.07 7.58 -2.39 -0.02 3.05 16 10 C -0.12 -4.44 5.57 30.62 0.17 -4.27 16 11 C -0.13 -5.12 5.93 30.67 0.18 -4.94 16 12 C 0.18 8.76 5.28 86.36 0.46 9.21 16 13 N -0.60 -28.73 2.64 -674.41 -1.78 -30.51 16 14 C -0.25 -12.64 8.59 84.03 0.72 -11.92 16 15 H 0.08 3.76 6.22 -2.91 -0.02 3.74 16 16 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 17 N -0.94 -54.19 11.14 21.65 0.24 -53.95 16 18 Si 0.96 43.28 29.58 68.60 2.03 45.31 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.16 6.62 3.22 45.12 0.15 6.77 16 23 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 24 C -0.13 -4.81 7.75 71.98 0.56 -4.25 16 25 C 0.49 15.21 7.93 86.39 0.68 15.90 16 26 O -0.54 -21.35 16.40 14.74 0.24 -21.11 16 27 N -0.56 -9.23 5.29 -301.77 -1.60 -10.82 16 28 H 0.44 3.95 8.64 -92.71 -0.80 3.14 16 29 C 0.20 2.26 6.78 41.61 0.28 2.54 16 30 C -0.13 0.20 8.83 71.24 0.63 0.83 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.11 0.37 6.43 -2.38 -0.02 0.35 16 34 H 0.41 16.66 7.16 -92.70 -0.66 16.00 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.05 1.95 7.53 -2.39 -0.02 1.94 16 38 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 39 H 0.06 3.18 6.06 -2.39 -0.01 3.16 16 40 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 42 H 0.05 2.00 6.42 -2.39 -0.02 1.98 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 44 H 0.05 2.09 7.62 -2.39 -0.02 2.07 16 45 H 0.10 -0.55 7.90 -2.38 -0.02 -0.57 16 46 H 0.13 -0.58 8.09 -2.39 -0.02 -0.59 16 47 H 0.13 -0.59 7.37 -2.39 -0.02 -0.61 16 Total: -1.00 -81.57 373.28 2.07 -79.51 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.44 Total: 23.36 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 6.30 Total: 34.49 kcal Atomic # 7 Polarization: -128.81 SS G_CDS: -6.30 Total: -135.11 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: 0.48 Total: -47.56 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -81.57 2.07 -79.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993496669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.610 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds