Wall clock time and date at job start Tue Mar 31 2020 17:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32166 * 119.14637 * 2 1 4 4 C 1.32366 * 120.60927 * 179.97438 * 3 2 1 5 5 C 1.47497 * 120.51116 * 179.97438 * 4 3 2 6 6 O 1.21592 * 120.00440 * 180.02562 * 5 4 3 7 7 N 1.34784 * 119.99897 * 0.02562 * 5 4 3 8 8 C 1.47018 * 125.64652 * 0.02823 * 7 5 4 9 9 C 1.54323 * 107.27090 * 181.01861 * 8 7 5 10 10 H 1.09000 * 110.72417 * 263.83026 * 9 8 7 11 11 N 1.46497 * 110.72338 * 140.55428 * 9 8 7 12 12 C 1.36939 * 119.99880 * 86.45095 * 11 9 8 13 13 H 1.07997 * 119.99919 * 0.02562 * 12 11 9 14 14 C 1.38818 * 120.00058 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99914 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99814 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47087 * 89.99682 * 16 14 12 18 18 H 1.48501 * 109.46775 * 209.99338 * 16 14 12 19 19 H 1.48495 * 109.47107 * 329.99341 * 16 14 12 20 20 C 1.55160 * 102.94257 * 22.19611 * 9 8 7 21 21 C 1.52995 * 111.00849 * 82.56719 * 20 9 8 22 22 C 1.53003 * 111.00674 * 206.38869 * 20 9 8 23 23 C 1.47419 * 125.64766 * 179.71868 * 7 5 4 24 24 C 1.46669 * 118.97916 * 359.97438 * 4 3 2 25 25 O 1.21863 * 120.78396 * 179.97438 * 24 4 3 26 26 N 1.35153 * 118.43593 * 0.25132 * 24 4 3 27 27 H 0.97000 * 120.37180 * 179.72531 * 26 24 4 28 28 C 1.34906 * 119.26112 * 359.52354 * 26 24 4 29 29 C 1.50693 * 119.50005 * 180.21042 * 28 26 24 30 30 H 1.08995 * 109.46903 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47028 * 120.00083 * 1 2 3 32 32 H 1.09002 * 109.47055 * 240.00176 * 1 2 3 33 33 H 1.08993 * 109.88456 * 300.43491 * 8 7 5 34 34 H 1.09000 * 109.88542 * 61.45323 * 8 7 5 35 35 H 0.97001 * 120.00682 * 266.46484 * 11 9 8 36 36 H 0.97000 * 119.99845 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.46651 * 60.00294 * 21 20 9 38 38 H 1.08994 * 109.47513 * 180.02562 * 21 20 9 39 39 H 1.09004 * 109.47374 * 300.00544 * 21 20 9 40 40 H 1.08992 * 109.47146 * 59.99296 * 22 20 9 41 41 H 1.08995 * 109.47309 * 179.97438 * 22 20 9 42 42 H 1.09008 * 109.46578 * 299.99500 * 22 20 9 43 43 H 1.09004 * 110.36604 * 274.75044 * 23 7 5 44 44 H 1.08997 * 110.37082 * 37.06719 * 23 7 5 45 45 H 1.09000 * 109.47095 * 270.25474 * 29 28 26 46 46 H 1.08998 * 109.47262 * 30.25224 * 29 28 26 47 47 H 1.08997 * 109.46866 * 150.25410 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1881 0.0005 5 6 4.1901 2.4775 -0.0001 6 8 5.4059 2.4978 -0.0001 7 7 3.4969 3.6334 -0.0006 8 6 2.0316 3.7537 -0.0001 9 6 1.6955 5.2597 -0.0272 10 1 1.5065 5.6309 0.9801 11 7 0.5483 5.5192 -0.9005 12 6 -0.7248 5.4219 -0.4056 13 1 -0.8830 5.1543 0.6287 14 6 -1.8119 5.6683 -1.2329 15 7 -3.0355 5.5752 -0.7571 16 14 -1.5380 6.1319 -3.0217 17 1 -1.5010 4.9011 -3.8519 18 1 -2.6468 7.0061 -3.4817 19 1 -0.2487 6.8568 -3.1534 20 6 2.9853 5.8931 -0.6126 21 6 2.9932 5.8087 -2.1402 22 6 3.1461 7.3412 -0.1454 23 6 4.0823 4.9864 0.0047 24 6 4.2171 -0.0764 0.0016 25 8 5.4357 -0.0837 0.0017 26 7 3.5185 -1.2334 -0.0031 27 1 3.9815 -2.0858 -0.0065 28 6 2.1702 -1.1896 0.0011 29 6 1.3860 -2.4764 0.0007 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 1.6193 3.2660 -0.8833 34 1 1.6224 3.2965 0.9008 35 1 0.6904 5.7597 -1.8294 36 1 -3.7951 5.7471 -1.3353 37 1 2.1301 6.3426 -2.5380 38 1 3.9083 6.2594 -2.5243 39 1 2.9469 4.7637 -2.4467 40 1 3.2066 7.3673 0.9425 41 1 4.0580 7.7608 -0.5699 42 1 2.2881 7.9268 -0.4758 43 1 4.3063 5.2988 1.0247 44 1 4.9839 5.0121 -0.6073 45 1 1.1976 -2.7868 -1.0270 46 1 1.9565 -3.2498 0.5150 47 1 0.4366 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995964167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:58 Heat of formation + Delta-G solvation = -1.864887 kcal Electronic energy + Delta-G solvation = -30265.041176 eV Core-core repulsion = 26256.225236 eV Total energy + Delta-G solvation = -4008.815940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87122 -39.86187 -38.20277 -37.66115 -35.58243 -34.14562 -33.36873 -32.87671 -31.07339 -29.47030 -27.85963 -27.27358 -27.08581 -25.91638 -24.80001 -23.67375 -22.93552 -21.21871 -19.79754 -18.92496 -18.78051 -18.04269 -17.56007 -16.62726 -16.43362 -15.79747 -15.63023 -15.25579 -14.61137 -14.32582 -14.19752 -14.17717 -13.71374 -13.64127 -13.43012 -13.31864 -13.19246 -13.06957 -12.62010 -12.46405 -12.21699 -12.06507 -11.99447 -11.91882 -11.64046 -11.48043 -11.39506 -11.27800 -11.13825 -10.97999 -10.55314 -10.49938 -10.28263 -10.05743 -9.83090 -9.55888 -9.36748 -8.91336 -8.31793 -8.04844 -7.31961 -5.80550 -3.16281 0.02235 1.55677 2.20279 2.72773 3.18520 3.33881 3.37079 3.43021 3.69635 3.79202 4.05417 4.12284 4.45069 4.55487 4.71422 4.85399 4.96847 5.07011 5.09453 5.10741 5.27490 5.41606 5.49805 5.51218 5.58009 5.70858 5.72649 5.80880 5.83091 5.90044 5.97794 5.98452 6.08934 6.19300 6.22842 6.28718 6.31148 6.36312 6.57163 6.59722 6.63950 6.67492 6.93061 7.42477 7.62358 7.81654 7.96812 8.38725 8.42487 9.16683 9.89072 10.08535 11.37493 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.004589 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.118384 B = 6099.686431 C = 8090.443523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.022 4.022 3 N -0.333 5.333 4 C 0.006 3.994 5 C 0.591 3.409 6 O -0.524 6.524 7 N -0.594 5.594 8 C 0.092 3.908 9 C 0.182 3.818 10 H 0.073 0.927 11 N -0.736 5.736 12 C -0.243 4.243 13 H 0.092 0.908 14 C 0.009 3.991 15 N -0.931 5.931 16 Si 0.877 3.123 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.277 1.277 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.129 4.129 23 C 0.120 3.880 24 C 0.498 3.502 25 O -0.490 6.490 26 N -0.587 5.587 27 H 0.419 0.581 28 C 0.147 3.853 29 C -0.130 4.130 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.366 0.634 36 H 0.259 0.741 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.602 -13.621 1.393 16.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 N -0.050 5.050 4 C -0.162 4.162 5 C 0.378 3.622 6 O -0.399 6.399 7 N -0.327 5.327 8 C -0.033 4.033 9 C 0.070 3.930 10 H 0.090 0.910 11 N -0.380 5.380 12 C -0.372 4.372 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.579 5.579 16 Si 0.707 3.293 17 H -0.211 1.211 18 H -0.217 1.217 19 H -0.203 1.203 20 C -0.092 4.092 21 C -0.193 4.193 22 C -0.187 4.187 23 C -0.003 4.003 24 C 0.290 3.710 25 O -0.362 6.362 26 N -0.223 5.223 27 H 0.259 0.741 28 C 0.031 3.969 29 C -0.187 4.187 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.201 0.799 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.266 -12.891 1.526 15.949 hybrid contribution 0.498 -1.038 -1.329 1.759 sum 9.764 -13.929 0.196 17.012 Atomic orbital electron populations 1.20599 0.86506 1.05672 1.01979 1.20345 0.98262 0.85464 1.10715 1.67991 1.08116 1.28890 0.99989 1.23810 0.89050 0.93602 1.09731 1.16668 0.85845 0.81394 0.78342 1.90853 1.12202 1.86254 1.50632 1.48263 1.09157 1.04618 1.70702 1.23256 0.77022 1.00159 1.02885 1.21282 0.85981 0.90735 0.94978 0.90950 1.42842 1.01968 1.83513 1.09651 1.19081 0.81017 1.39843 0.97307 0.88995 1.24616 0.95081 1.01633 0.97322 1.69690 0.97153 1.55808 1.35245 0.86686 0.77100 0.78401 0.87103 1.21086 1.21734 1.20280 1.22065 0.95768 0.95270 0.96093 1.21689 1.01482 1.02038 0.94046 1.21655 1.01748 0.94389 1.00913 1.22374 0.96604 0.80551 1.00723 1.19064 0.88345 0.83955 0.79641 1.91036 1.11464 1.85377 1.48358 1.43691 1.06423 1.11815 1.60387 0.74102 1.21569 0.83380 0.99112 0.92807 1.21219 1.01034 0.91643 1.04829 0.88836 0.90861 0.90821 0.90187 0.91330 0.79867 0.93077 0.91791 0.92846 0.92534 0.92455 0.93006 0.91479 0.91199 0.90609 0.88462 0.90137 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 8.82 36.01 0.32 -0.55 16 2 C -0.02 -0.25 6.70 -83.18 -0.56 -0.81 16 3 N -0.33 -5.02 6.90 -4.85 -0.03 -5.05 16 4 C 0.01 0.10 6.92 -80.46 -0.56 -0.46 16 5 C 0.59 11.09 7.83 -12.48 -0.10 11.00 16 6 O -0.52 -11.28 15.76 -15.19 -0.24 -11.52 16 7 N -0.59 -10.24 3.31 -171.63 -0.57 -10.81 16 8 C 0.09 1.64 4.84 -3.07 -0.01 1.62 16 9 C 0.18 3.32 2.85 -66.10 -0.19 3.14 16 10 H 0.07 1.35 8.02 -51.93 -0.42 0.94 16 11 N -0.74 -16.16 4.88 -51.65 -0.25 -16.41 16 12 C -0.24 -6.35 10.46 -15.06 -0.16 -6.51 16 13 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 15 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 16 Si 0.88 21.14 27.74 -169.99 -4.71 16.43 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 20 C -0.09 -1.40 0.87 -152.24 -0.13 -1.53 16 21 C -0.14 -2.11 7.94 37.15 0.30 -1.81 16 22 C -0.13 -1.77 8.68 37.16 0.32 -1.44 16 23 C 0.12 1.85 5.85 -2.41 -0.01 1.83 16 24 C 0.50 7.63 7.93 -12.69 -0.10 7.53 16 25 O -0.49 -9.25 16.40 -15.43 -0.25 -9.50 16 26 N -0.59 -5.78 5.29 -9.45 -0.05 -5.83 16 27 H 0.42 2.74 8.81 -40.82 -0.36 2.38 16 28 C 0.15 1.24 6.78 -81.98 -0.56 0.69 16 29 C -0.13 -0.48 9.59 36.00 0.35 -0.13 16 30 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.53 7.36 -51.93 -0.38 0.15 16 33 H 0.08 1.55 7.32 -51.93 -0.38 1.16 16 34 H 0.07 1.24 7.55 -51.93 -0.39 0.85 16 35 H 0.37 8.00 3.12 -40.82 -0.13 7.87 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.93 7.91 -51.93 -0.41 0.52 16 40 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 43 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 44 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 45 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 47 H 0.10 0.30 6.44 -51.93 -0.33 -0.03 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -35.65 376.71 -7.77 -43.42 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.92 Total: 7.88 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -1.19 Total: 12.72 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -0.13 Total: -65.11 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.49 Total: -21.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.65 -7.77 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995964167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.558 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds