Wall clock time and date at job start Tue Mar 31 2020 17:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32166 * 119.14637 * 2 1 4 4 C 1.32366 * 120.60927 * 179.97438 * 3 2 1 5 5 C 1.47497 * 120.51116 * 179.97438 * 4 3 2 6 6 O 1.21592 * 120.00440 * 180.02562 * 5 4 3 7 7 N 1.34784 * 119.99897 * 0.02562 * 5 4 3 8 8 C 1.47018 * 125.64652 * 0.02823 * 7 5 4 9 9 C 1.54323 * 107.27090 * 181.01861 * 8 7 5 10 10 H 1.09000 * 110.72417 * 263.83026 * 9 8 7 11 11 N 1.46497 * 110.72338 * 140.55428 * 9 8 7 12 12 C 1.36939 * 119.99880 * 86.45095 * 11 9 8 13 13 H 1.07997 * 119.99919 * 0.02562 * 12 11 9 14 14 C 1.38818 * 120.00058 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99914 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99814 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47087 * 89.99682 * 16 14 12 18 18 H 1.48501 * 109.46775 * 209.99338 * 16 14 12 19 19 H 1.48495 * 109.47107 * 329.99341 * 16 14 12 20 20 C 1.55160 * 102.94257 * 22.19611 * 9 8 7 21 21 C 1.52995 * 111.00849 * 82.56719 * 20 9 8 22 22 C 1.53003 * 111.00674 * 206.38869 * 20 9 8 23 23 C 1.47419 * 125.64766 * 179.71868 * 7 5 4 24 24 C 1.46669 * 118.97916 * 359.97438 * 4 3 2 25 25 O 1.21863 * 120.78396 * 179.97438 * 24 4 3 26 26 N 1.35153 * 118.43593 * 0.25132 * 24 4 3 27 27 H 0.97000 * 120.37180 * 179.72531 * 26 24 4 28 28 C 1.34906 * 119.26112 * 359.52354 * 26 24 4 29 29 C 1.50693 * 119.50005 * 180.21042 * 28 26 24 30 30 H 1.08995 * 109.46903 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47028 * 120.00083 * 1 2 3 32 32 H 1.09002 * 109.47055 * 240.00176 * 1 2 3 33 33 H 1.08993 * 109.88456 * 300.43491 * 8 7 5 34 34 H 1.09000 * 109.88542 * 61.45323 * 8 7 5 35 35 H 0.97001 * 120.00682 * 266.46484 * 11 9 8 36 36 H 0.97000 * 119.99845 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.46651 * 60.00294 * 21 20 9 38 38 H 1.08994 * 109.47513 * 180.02562 * 21 20 9 39 39 H 1.09004 * 109.47374 * 300.00544 * 21 20 9 40 40 H 1.08992 * 109.47146 * 59.99296 * 22 20 9 41 41 H 1.08995 * 109.47309 * 179.97438 * 22 20 9 42 42 H 1.09008 * 109.46578 * 299.99500 * 22 20 9 43 43 H 1.09004 * 110.36604 * 274.75044 * 23 7 5 44 44 H 1.08997 * 110.37082 * 37.06719 * 23 7 5 45 45 H 1.09000 * 109.47095 * 270.25474 * 29 28 26 46 46 H 1.08998 * 109.47262 * 30.25224 * 29 28 26 47 47 H 1.08997 * 109.46866 * 150.25410 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1881 0.0005 5 6 4.1901 2.4775 -0.0001 6 8 5.4059 2.4978 -0.0001 7 7 3.4969 3.6334 -0.0006 8 6 2.0316 3.7537 -0.0001 9 6 1.6955 5.2597 -0.0272 10 1 1.5065 5.6309 0.9801 11 7 0.5483 5.5192 -0.9005 12 6 -0.7248 5.4219 -0.4056 13 1 -0.8830 5.1543 0.6287 14 6 -1.8119 5.6683 -1.2329 15 7 -3.0355 5.5752 -0.7571 16 14 -1.5380 6.1319 -3.0217 17 1 -1.5010 4.9011 -3.8519 18 1 -2.6468 7.0061 -3.4817 19 1 -0.2487 6.8568 -3.1534 20 6 2.9853 5.8931 -0.6126 21 6 2.9932 5.8087 -2.1402 22 6 3.1461 7.3412 -0.1454 23 6 4.0823 4.9864 0.0047 24 6 4.2171 -0.0764 0.0016 25 8 5.4357 -0.0837 0.0017 26 7 3.5185 -1.2334 -0.0031 27 1 3.9815 -2.0858 -0.0065 28 6 2.1702 -1.1896 0.0011 29 6 1.3860 -2.4764 0.0007 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5138 0.8900 33 1 1.6193 3.2660 -0.8833 34 1 1.6224 3.2965 0.9008 35 1 0.6904 5.7597 -1.8294 36 1 -3.7951 5.7471 -1.3353 37 1 2.1301 6.3426 -2.5380 38 1 3.9083 6.2594 -2.5243 39 1 2.9469 4.7637 -2.4467 40 1 3.2066 7.3673 0.9425 41 1 4.0580 7.7608 -0.5699 42 1 2.2881 7.9268 -0.4758 43 1 4.3063 5.2988 1.0247 44 1 4.9839 5.0121 -0.6073 45 1 1.1976 -2.7868 -1.0270 46 1 1.9565 -3.2498 0.5150 47 1 0.4366 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995964167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:57 Heat of formation + Delta-G solvation = -27.580671 kcal Electronic energy + Delta-G solvation = -30266.156296 eV Core-core repulsion = 26256.225236 eV Total energy + Delta-G solvation = -4009.931060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.91233 -41.23019 -39.44831 -38.96169 -36.63727 -35.91324 -34.61273 -33.97037 -33.00165 -30.21278 -29.44607 -28.43372 -28.25549 -27.06124 -25.70504 -25.43015 -24.06469 -22.72573 -21.03104 -20.47215 -19.84688 -19.38390 -19.12134 -17.81053 -17.54705 -17.06107 -16.89779 -16.68936 -16.37230 -15.76767 -15.28111 -15.09953 -15.02866 -14.95476 -14.78407 -14.29837 -14.16684 -14.00421 -13.79487 -13.76205 -13.63149 -13.38678 -13.14783 -12.94535 -12.85703 -12.78414 -12.76981 -12.58542 -12.37576 -12.31827 -12.15149 -11.94816 -11.87853 -11.60211 -11.41445 -11.24751 -10.95104 -10.43203 -9.69557 -9.27550 -9.08192 -7.94891 -5.28029 -0.96793 0.48649 1.21166 1.41465 1.42548 1.49425 1.49779 1.97723 2.52219 2.52910 2.88367 2.96345 3.34198 3.38954 3.42550 3.61801 3.74631 3.77609 3.87435 4.05123 4.27230 4.41649 4.46520 4.51214 4.61518 4.63733 4.69110 4.79398 4.82732 4.84477 4.89893 4.99552 5.02501 5.05447 5.07714 5.16838 5.19961 5.22306 5.22886 5.33069 5.38033 5.51294 5.53058 5.85702 6.28381 6.38776 6.43588 6.59423 7.06887 7.13981 7.88174 8.08237 9.26165 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.004589 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.118384 B = 6099.686431 C = 8090.443523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.052 4.052 3 N -0.340 5.340 4 C -0.065 4.065 5 C 0.588 3.412 6 O -0.564 6.564 7 N -0.595 5.595 8 C 0.114 3.886 9 C 0.175 3.825 10 H 0.068 0.932 11 N -0.735 5.735 12 C -0.221 4.221 13 H 0.064 0.936 14 C -0.052 4.052 15 N -0.978 5.978 16 Si 0.936 3.064 17 H -0.282 1.282 18 H -0.298 1.298 19 H -0.253 1.253 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.126 4.126 23 C 0.119 3.881 24 C 0.496 3.504 25 O -0.538 6.538 26 N -0.563 5.563 27 H 0.440 0.560 28 C 0.203 3.797 29 C -0.132 4.132 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.369 0.631 36 H 0.256 0.744 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.126 0.874 46 H 0.111 0.889 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -15.863 0.645 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.182 4.182 3 N -0.058 5.058 4 C -0.226 4.226 5 C 0.376 3.624 6 O -0.443 6.443 7 N -0.327 5.327 8 C -0.012 4.012 9 C 0.065 3.935 10 H 0.086 0.914 11 N -0.379 5.379 12 C -0.352 4.352 13 H 0.082 0.918 14 C -0.243 4.243 15 N -0.629 5.629 16 Si 0.764 3.236 17 H -0.208 1.208 18 H -0.225 1.225 19 H -0.178 1.178 20 C -0.081 4.081 21 C -0.191 4.191 22 C -0.183 4.183 23 C -0.003 4.003 24 C 0.291 3.709 25 O -0.415 6.415 26 N -0.198 5.198 27 H 0.284 0.716 28 C 0.084 3.916 29 C -0.189 4.189 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.205 0.795 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.443 -15.114 0.784 17.839 hybrid contribution 0.306 -0.650 -1.002 1.233 sum 9.749 -15.764 -0.219 18.537 Atomic orbital electron populations 1.20658 0.84993 1.03953 1.04650 1.20884 0.99351 0.85663 1.12287 1.67835 1.07766 1.31358 0.98813 1.23251 0.89510 0.93191 1.16612 1.17053 0.85606 0.82393 0.77307 1.90798 1.13704 1.86986 1.52821 1.48261 1.08654 1.05209 1.70621 1.22828 0.77558 0.99215 1.01586 1.21427 0.86291 0.91352 0.94474 0.91360 1.42772 1.01437 1.83541 1.10195 1.19010 0.82756 1.37448 0.95983 0.91843 1.25264 0.94782 1.02839 1.01461 1.69849 0.98075 1.58212 1.36769 0.85713 0.77680 0.78161 0.82049 1.20823 1.22465 1.17801 1.22024 0.93574 0.96409 0.96122 1.21677 1.02308 1.01194 0.93881 1.21642 1.02417 0.92527 1.01722 1.22495 0.96521 0.79682 1.01605 1.18915 0.87770 0.84894 0.79357 1.90996 1.13217 1.86171 1.51140 1.43604 1.07075 1.11485 1.57596 0.71607 1.22375 0.82648 1.00616 0.85929 1.21597 1.01245 0.88948 1.07108 0.92793 0.88390 0.87872 0.91902 0.92280 0.79511 0.93489 0.92785 0.90264 0.93984 0.91505 0.90469 0.92730 0.89894 0.90277 0.85629 0.87039 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 8.82 71.24 0.63 -0.83 16 2 C -0.05 -1.11 6.70 42.03 0.28 -0.83 16 3 N -0.34 -10.50 6.90 -169.25 -1.17 -11.67 16 4 C -0.06 -2.24 6.92 43.71 0.30 -1.94 16 5 C 0.59 23.29 7.83 86.68 0.68 23.97 16 6 O -0.56 -25.67 15.76 15.57 0.25 -25.42 16 7 N -0.60 -21.30 3.31 -815.16 -2.70 -24.00 16 8 C 0.11 4.20 4.84 86.73 0.42 4.62 16 9 C 0.17 6.48 2.85 46.18 0.13 6.61 16 10 H 0.07 2.60 8.02 -2.39 -0.02 2.58 16 11 N -0.74 -32.50 4.88 -317.33 -1.55 -34.05 16 12 C -0.22 -11.84 10.46 84.03 0.88 -10.96 16 13 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 14 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 15 N -0.98 -59.94 13.97 21.65 0.30 -59.64 16 16 Si 0.94 43.79 27.74 68.60 1.90 45.69 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 19 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 20 C -0.08 -2.42 0.87 -50.71 -0.04 -2.46 16 21 C -0.13 -4.01 7.94 71.98 0.57 -3.44 16 22 C -0.13 -3.20 8.68 71.98 0.62 -2.58 16 23 C 0.12 3.65 5.85 86.94 0.51 4.16 16 24 C 0.50 15.40 7.93 86.39 0.68 16.09 16 25 O -0.54 -21.09 16.40 14.71 0.24 -20.85 16 26 N -0.56 -9.71 5.29 -301.75 -1.60 -11.30 16 27 H 0.44 4.22 8.81 -92.71 -0.82 3.40 16 28 C 0.20 2.70 6.78 41.61 0.28 2.98 16 29 C -0.13 -0.14 9.59 71.23 0.68 0.55 16 30 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.10 1.12 7.36 -2.39 -0.02 1.11 16 33 H 0.06 2.54 7.32 -2.39 -0.02 2.52 16 34 H 0.06 2.26 7.55 -2.39 -0.02 2.24 16 35 H 0.37 15.90 3.12 -92.71 -0.29 15.61 16 36 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.05 1.73 6.34 -2.38 -0.02 1.72 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.37 7.91 -2.38 -0.02 1.35 16 40 H 0.07 1.57 8.07 -2.39 -0.02 1.56 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.08 2.32 7.99 -2.38 -0.02 2.30 16 44 H 0.08 2.40 7.95 -2.39 -0.02 2.39 16 45 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 47 H 0.12 -0.11 6.44 -2.39 -0.02 -0.12 16 Total: -1.00 -84.67 376.71 2.63 -82.04 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.15 Total: 25.67 kcal Atomic # 6 Polarization: 26.42 SS G_CDS: 7.10 Total: 33.52 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -6.71 Total: -140.65 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: 0.49 Total: -46.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.69 kcal Total: -84.67 2.63 -82.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995964167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.462 kcal (2) G-P(sol) polarization free energy of solvation -84.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds