Wall clock time and date at job start Tue Mar 31 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34487 * 126.82803 * 2 1 4 4 N 1.36450 * 108.85349 * 179.97438 * 3 2 1 5 5 H 0.97000 * 124.85200 * 179.97438 * 4 3 2 6 6 C 1.34660 * 110.29768 * 359.72477 * 4 3 2 7 7 C 1.50704 * 125.80504 * 180.31832 * 6 4 3 8 8 C 1.50701 * 109.46744 * 265.14918 * 7 6 4 9 9 N 1.34778 * 119.99617 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00620 * 359.97438 * 8 7 6 11 11 C 1.36768 * 108.39461 * 0.44515 * 6 4 3 12 12 C 1.47265 * 126.94310 * 179.83590 * 11 6 4 13 13 O 1.21633 * 119.99935 * 269.71100 * 12 11 6 14 14 N 1.34773 * 120.00141 * 89.98322 * 12 11 6 15 15 C 1.46931 * 120.63014 * 359.44994 * 14 12 11 16 16 C 1.52760 * 109.00671 * 233.58244 * 15 14 12 17 17 C 1.53045 * 109.38342 * 305.58369 * 16 15 14 18 18 N 1.46494 * 109.44749 * 181.25337 * 17 16 15 19 19 C 1.36943 * 120.00078 * 84.94289 * 18 17 16 20 20 H 1.08006 * 119.99499 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00026 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99509 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00038 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47243 * 89.99904 * 23 21 19 25 25 H 1.48501 * 109.47026 * 209.99575 * 23 21 19 26 26 H 1.48495 * 109.47533 * 329.99455 * 23 21 19 27 27 C 1.53046 * 109.53464 * 61.24269 * 17 16 15 28 28 C 1.46933 * 120.63376 * 179.72543 * 14 12 11 29 29 H 1.09000 * 109.47557 * 270.03131 * 1 2 3 30 30 H 1.08997 * 109.47240 * 30.03459 * 1 2 3 31 31 H 1.09005 * 109.46812 * 150.02551 * 1 2 3 32 32 H 1.07997 * 125.57835 * 359.93455 * 3 2 1 33 33 H 1.08998 * 109.46761 * 25.15099 * 7 6 4 34 34 H 1.08998 * 109.47207 * 145.15205 * 7 6 4 35 35 H 0.97006 * 119.99875 * 359.97438 * 9 8 7 36 36 H 0.97000 * 120.00130 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.58642 * 353.41475 * 15 14 12 38 38 H 1.08998 * 109.58378 * 113.84110 * 15 14 12 39 39 H 1.08996 * 109.56312 * 185.55648 * 16 15 14 40 40 H 1.08999 * 109.36315 * 65.49444 * 16 15 14 41 41 H 1.08997 * 109.46006 * 301.22393 * 17 16 15 42 42 H 0.97003 * 120.00659 * 264.94169 * 18 17 16 43 43 H 0.97005 * 119.99628 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.49246 * 178.68072 * 27 17 16 45 45 H 1.09004 * 109.52288 * 58.60123 * 27 17 16 46 46 H 1.08999 * 109.58639 * 246.15749 * 28 14 12 47 47 H 1.08996 * 109.58182 * 6.43979 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6554 0.0006 5 1 4.3839 1.2415 0.0003 6 6 3.6656 -0.6901 0.0070 7 6 4.9226 -1.5214 0.0164 8 6 5.2815 -1.9052 -1.3960 9 7 6.3765 -2.6543 -1.6332 10 8 4.5850 -1.5401 -2.3193 11 6 2.3864 -1.1739 0.0007 12 6 1.9750 -2.5879 0.0010 13 8 1.8059 -3.1723 -1.0522 14 7 1.7804 -3.2329 1.1683 15 6 1.9866 -2.5422 2.4486 16 6 2.9546 -3.3579 3.3038 17 6 2.4305 -4.7895 3.4387 18 7 3.3423 -5.5650 4.2833 19 6 3.2124 -5.5273 5.6460 20 1 2.4378 -4.9254 6.0981 21 6 4.0760 -6.2626 6.4462 22 7 3.9513 -6.2258 7.7560 23 14 5.4159 -7.3030 5.6643 24 1 6.6486 -6.4891 5.5111 25 1 5.7012 -8.4751 6.5303 26 1 4.9634 -7.7719 4.3300 27 6 2.3444 -5.4356 2.0540 28 6 1.3641 -4.6419 1.1848 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9867 2.1059 -0.0010 33 1 5.7368 -0.9439 0.4541 34 1 4.7578 -2.4226 0.6071 35 1 6.9338 -2.9460 -0.8947 36 1 6.6078 -2.9011 -2.5423 37 1 2.4065 -1.5530 2.2667 38 1 1.0340 -2.4470 2.9699 39 1 3.0378 -2.9064 4.2923 40 1 3.9343 -3.3727 2.8263 41 1 1.4402 -4.7723 3.8937 42 1 4.0382 -6.1054 3.8773 43 1 4.5551 -6.7394 8.3152 44 1 1.9934 -6.4628 2.1532 45 1 3.3297 -5.4312 1.5880 46 1 0.3598 -4.7213 1.6009 47 1 1.3709 -5.0368 0.1688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997026690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:41 Heat of formation + Delta-G solvation = -18.515894 kcal Electronic energy + Delta-G solvation = -29965.567156 eV Core-core repulsion = 25956.029175 eV Total energy + Delta-G solvation = -4009.537981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54953 -39.52471 -39.29450 -37.23129 -34.51918 -33.88416 -32.94626 -32.24798 -31.68383 -30.73238 -29.78443 -28.32846 -26.08235 -25.08838 -23.15666 -22.79614 -21.59306 -21.11051 -19.98195 -19.51457 -18.50205 -18.06240 -17.46967 -17.23063 -16.81857 -16.46357 -15.66908 -15.17267 -14.84529 -14.75953 -14.54069 -14.09178 -13.82888 -13.72533 -13.54761 -13.47197 -13.38677 -13.05069 -12.77372 -12.74112 -12.61281 -12.38342 -12.21150 -12.06973 -11.79399 -11.34883 -11.05697 -10.97856 -10.88559 -10.52650 -10.27039 -10.20794 -9.89261 -9.88336 -9.70719 -9.62296 -8.96727 -8.53527 -8.40721 -8.20616 -7.31140 -5.81011 -3.16612 1.95521 2.45059 2.51334 2.79592 2.98871 3.32889 3.36211 3.38926 3.41748 3.43769 4.32207 4.54991 4.65025 4.78881 4.84043 4.98064 5.10978 5.14415 5.16903 5.29029 5.32406 5.39791 5.46937 5.50434 5.65451 5.69211 5.69951 5.82836 5.92861 5.97085 6.03065 6.12332 6.13574 6.20910 6.32068 6.40893 6.54760 6.59470 6.72561 6.84459 6.88121 6.95553 7.06380 7.36915 7.64319 7.95350 8.06194 8.38228 8.43914 9.16649 9.89389 10.09360 11.37341 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003547 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.344548 B = 7892.026052 C = 8665.836070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.133 4.133 3 C -0.007 4.007 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.081 3.919 7 C -0.082 4.082 8 C 0.515 3.485 9 N -0.858 5.858 10 O -0.520 6.520 11 C -0.185 4.185 12 C 0.590 3.410 13 O -0.539 6.539 14 N -0.602 5.602 15 C 0.112 3.888 16 C -0.149 4.149 17 C 0.183 3.817 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.934 5.934 23 Si 0.883 3.117 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.141 4.141 28 C 0.115 3.885 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.169 0.831 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.402 0.598 36 H 0.402 0.598 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.355 14.462 -16.047 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C -0.136 4.136 4 N -0.140 5.140 5 H 0.250 0.750 6 C -0.035 4.035 7 C -0.123 4.123 8 C 0.299 3.701 9 N -0.423 5.423 10 O -0.394 6.394 11 C -0.195 4.195 12 C 0.378 3.622 13 O -0.416 6.416 14 N -0.335 5.335 15 C -0.012 4.012 16 C -0.190 4.190 17 C 0.074 3.926 18 N -0.390 5.390 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.582 5.582 23 Si 0.714 3.286 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.180 4.180 28 C -0.007 4.007 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.186 0.814 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.230 0.770 36 H 0.233 0.767 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.193 0.807 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.689 14.599 -16.821 22.284 hybrid contribution 1.951 -0.760 -0.245 2.108 sum 2.640 13.839 -17.066 22.130 Atomic orbital electron populations 1.20123 0.89665 1.02264 1.01714 1.20377 0.95127 0.90328 1.08197 1.21422 0.82118 0.98957 1.11099 1.41217 1.08226 1.05663 1.58889 0.75044 1.19064 0.93828 0.83198 1.07366 1.20239 0.95105 1.01251 0.95686 1.20415 0.80377 0.78117 0.91204 1.43826 1.28944 1.56618 1.12868 1.90821 1.49627 1.53293 1.45626 1.19877 0.92299 0.92603 1.14764 1.17566 0.76379 0.85166 0.83096 1.90778 1.51520 1.68069 1.31220 1.48161 1.67305 1.12058 1.06016 1.21691 1.00031 0.96122 0.83314 1.22541 0.98141 0.98630 0.99655 1.20154 0.94207 0.89272 0.89011 1.42803 1.37323 1.55194 1.03729 1.19080 1.13802 1.23963 0.80418 0.89163 1.24665 0.99200 1.00103 0.95121 1.69703 1.40382 1.45581 1.02501 0.86564 0.82880 0.80633 0.78522 1.21212 1.21787 1.20334 1.22234 0.99461 0.99754 0.96549 1.21579 0.97624 0.80149 1.01385 0.91660 0.91871 0.91914 0.81415 0.87612 0.86438 0.77003 0.76711 0.90058 0.91595 0.90248 0.92696 0.92488 0.80730 0.93070 0.90564 0.92175 0.91410 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.35 36.01 0.37 -0.47 16 2 C -0.13 -1.63 6.36 -102.54 -0.65 -2.28 16 3 C -0.01 -0.07 11.82 -16.82 -0.20 -0.27 16 4 N -0.55 -5.00 5.90 -9.11 -0.05 -5.06 16 5 H 0.41 2.40 8.96 -40.82 -0.37 2.04 16 6 C 0.08 0.96 5.53 -81.88 -0.45 0.51 16 7 C -0.08 -0.80 6.01 -29.03 -0.17 -0.97 16 8 C 0.52 6.04 8.09 -10.98 -0.09 5.95 16 9 N -0.86 -6.61 8.87 31.22 0.28 -6.33 16 10 O -0.52 -8.70 16.87 5.56 0.09 -8.60 16 11 C -0.18 -2.62 4.05 -103.35 -0.42 -3.04 16 12 C 0.59 9.61 7.18 -12.59 -0.09 9.52 16 13 O -0.54 -10.81 16.52 5.25 0.09 -10.72 16 14 N -0.60 -8.71 2.98 -174.36 -0.52 -9.23 16 15 C 0.11 1.49 6.31 -3.93 -0.02 1.46 16 16 C -0.15 -2.31 5.64 -26.83 -0.15 -2.46 16 17 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 18 N -0.75 -16.70 4.92 -53.38 -0.26 -16.96 16 19 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 20 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 23 Si 0.88 21.39 27.74 -169.99 -4.71 16.68 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 27 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 28 C 0.12 1.65 6.44 -3.71 -0.02 1.63 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 36 H 0.40 2.83 8.93 -40.82 -0.36 2.46 16 37 H 0.08 1.01 6.23 -51.93 -0.32 0.69 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 42 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -38.41 388.06 -8.05 -46.46 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.09 Total: 11.99 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.49 Total: 3.70 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: 0.22 Total: -65.34 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.33 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.41 -8.05 -46.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997026690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.940 kcal (2) G-P(sol) polarization free energy of solvation -38.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds