Wall clock time and date at job start Tue Mar 31 2020 18:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34487 * 126.82803 * 2 1 4 4 N 1.36450 * 108.85349 * 179.97438 * 3 2 1 5 5 H 0.97000 * 124.85200 * 179.97438 * 4 3 2 6 6 C 1.34660 * 110.29768 * 359.72477 * 4 3 2 7 7 C 1.50704 * 125.80504 * 180.31832 * 6 4 3 8 8 C 1.50701 * 109.46744 * 265.14918 * 7 6 4 9 9 N 1.34778 * 119.99617 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00620 * 359.97438 * 8 7 6 11 11 C 1.36768 * 108.39461 * 0.44515 * 6 4 3 12 12 C 1.47265 * 126.94310 * 179.83590 * 11 6 4 13 13 O 1.21633 * 119.99935 * 269.71100 * 12 11 6 14 14 N 1.34773 * 120.00141 * 89.98322 * 12 11 6 15 15 C 1.46931 * 120.63014 * 359.44994 * 14 12 11 16 16 C 1.52760 * 109.00671 * 233.58244 * 15 14 12 17 17 C 1.53045 * 109.38342 * 305.58369 * 16 15 14 18 18 N 1.46494 * 109.44749 * 181.25337 * 17 16 15 19 19 C 1.36943 * 120.00078 * 84.94289 * 18 17 16 20 20 H 1.08006 * 119.99499 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00026 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99509 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00038 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47243 * 89.99904 * 23 21 19 25 25 H 1.48501 * 109.47026 * 209.99575 * 23 21 19 26 26 H 1.48495 * 109.47533 * 329.99455 * 23 21 19 27 27 C 1.53046 * 109.53464 * 61.24269 * 17 16 15 28 28 C 1.46933 * 120.63376 * 179.72543 * 14 12 11 29 29 H 1.09000 * 109.47557 * 270.03131 * 1 2 3 30 30 H 1.08997 * 109.47240 * 30.03459 * 1 2 3 31 31 H 1.09005 * 109.46812 * 150.02551 * 1 2 3 32 32 H 1.07997 * 125.57835 * 359.93455 * 3 2 1 33 33 H 1.08998 * 109.46761 * 25.15099 * 7 6 4 34 34 H 1.08998 * 109.47207 * 145.15205 * 7 6 4 35 35 H 0.97006 * 119.99875 * 359.97438 * 9 8 7 36 36 H 0.97000 * 120.00130 * 180.02562 * 9 8 7 37 37 H 1.08995 * 109.58642 * 353.41475 * 15 14 12 38 38 H 1.08998 * 109.58378 * 113.84110 * 15 14 12 39 39 H 1.08996 * 109.56312 * 185.55648 * 16 15 14 40 40 H 1.08999 * 109.36315 * 65.49444 * 16 15 14 41 41 H 1.08997 * 109.46006 * 301.22393 * 17 16 15 42 42 H 0.97003 * 120.00659 * 264.94169 * 18 17 16 43 43 H 0.97005 * 119.99628 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.49246 * 178.68072 * 27 17 16 45 45 H 1.09004 * 109.52288 * 58.60123 * 27 17 16 46 46 H 1.08999 * 109.58639 * 246.15749 * 28 14 12 47 47 H 1.08996 * 109.58182 * 6.43979 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6554 0.0006 5 1 4.3839 1.2415 0.0003 6 6 3.6656 -0.6901 0.0070 7 6 4.9226 -1.5214 0.0164 8 6 5.2815 -1.9052 -1.3960 9 7 6.3765 -2.6543 -1.6332 10 8 4.5850 -1.5401 -2.3193 11 6 2.3864 -1.1739 0.0007 12 6 1.9750 -2.5879 0.0010 13 8 1.8059 -3.1723 -1.0522 14 7 1.7804 -3.2329 1.1683 15 6 1.9866 -2.5422 2.4486 16 6 2.9546 -3.3579 3.3038 17 6 2.4305 -4.7895 3.4387 18 7 3.3423 -5.5650 4.2833 19 6 3.2124 -5.5273 5.6460 20 1 2.4378 -4.9254 6.0981 21 6 4.0760 -6.2626 6.4462 22 7 3.9513 -6.2258 7.7560 23 14 5.4159 -7.3030 5.6643 24 1 6.6486 -6.4891 5.5111 25 1 5.7012 -8.4751 6.5303 26 1 4.9634 -7.7719 4.3300 27 6 2.3444 -5.4356 2.0540 28 6 1.3641 -4.6419 1.1848 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3633 -0.8903 -0.5135 32 1 1.9867 2.1059 -0.0010 33 1 5.7368 -0.9439 0.4541 34 1 4.7578 -2.4226 0.6071 35 1 6.9338 -2.9460 -0.8947 36 1 6.6078 -2.9011 -2.5423 37 1 2.4065 -1.5530 2.2667 38 1 1.0340 -2.4470 2.9699 39 1 3.0378 -2.9064 4.2923 40 1 3.9343 -3.3727 2.8263 41 1 1.4402 -4.7723 3.8937 42 1 4.0382 -6.1054 3.8773 43 1 4.5551 -6.7394 8.3152 44 1 1.9934 -6.4628 2.1532 45 1 3.3297 -5.4312 1.5880 46 1 0.3598 -4.7213 1.6009 47 1 1.3709 -5.0368 0.1688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997026690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:40 Heat of formation + Delta-G solvation = -48.964068 kcal Electronic energy + Delta-G solvation = -29966.887488 eV Core-core repulsion = 25956.029175 eV Total energy + Delta-G solvation = -4010.858313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39956 -40.71557 -40.19782 -38.63737 -36.16954 -34.72754 -33.95828 -33.68621 -32.83911 -31.85830 -31.42982 -29.23969 -26.92241 -26.54236 -24.49645 -24.23827 -22.83144 -22.07796 -21.28731 -20.31821 -19.85066 -19.21458 -18.83872 -18.08169 -17.65180 -17.56343 -16.73584 -16.66336 -16.12027 -15.94295 -15.82416 -15.38512 -15.02990 -14.94960 -14.66060 -14.56857 -14.51082 -14.25526 -14.09699 -13.85094 -13.53029 -13.48974 -13.39043 -13.19983 -13.01361 -12.89511 -12.61154 -12.21216 -12.13235 -12.03127 -11.98521 -11.74862 -11.31430 -11.16544 -11.01803 -10.85791 -10.68106 -9.65614 -9.41949 -9.25479 -9.00682 -7.97476 -5.30519 1.10804 1.41119 1.43833 1.51438 1.59411 1.61133 1.67371 2.08365 2.44205 2.52564 2.72960 3.34196 3.54128 3.54743 3.75413 3.96590 4.03585 4.12286 4.15141 4.21524 4.27851 4.35121 4.38695 4.43647 4.56451 4.62275 4.69559 4.77709 4.86062 4.87337 4.92750 5.02667 5.05230 5.09499 5.17176 5.29716 5.32889 5.49885 5.66611 5.82985 5.86250 5.87619 6.05966 6.26425 6.40549 6.45865 6.74164 7.12755 7.23242 7.31884 7.88925 8.08083 9.24053 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003547 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.344548 B = 7892.026052 C = 8665.836070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.165 4.165 3 C 0.009 3.991 4 N -0.532 5.532 5 H 0.431 0.569 6 C 0.079 3.921 7 C -0.082 4.082 8 C 0.511 3.489 9 N -0.839 5.839 10 O -0.578 6.578 11 C -0.226 4.226 12 C 0.593 3.407 13 O -0.587 6.587 14 N -0.597 5.597 15 C 0.123 3.877 16 C -0.137 4.137 17 C 0.177 3.823 18 N -0.750 5.750 19 C -0.223 4.223 20 H 0.059 0.941 21 C -0.063 4.063 22 N -0.985 5.985 23 Si 0.951 3.049 24 H -0.277 1.277 25 H -0.302 1.302 26 H -0.254 1.254 27 C -0.128 4.128 28 C 0.118 3.882 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.206 0.794 33 H 0.148 0.852 34 H 0.115 0.885 35 H 0.418 0.582 36 H 0.406 0.594 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.364 0.636 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 15.876 -17.103 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.172 4.172 3 C -0.120 4.120 4 N -0.128 5.128 5 H 0.271 0.729 6 C -0.038 4.038 7 C -0.122 4.122 8 C 0.296 3.704 9 N -0.403 5.403 10 O -0.457 6.457 11 C -0.237 4.237 12 C 0.383 3.617 13 O -0.467 6.467 14 N -0.329 5.329 15 C 0.000 4.000 16 C -0.177 4.177 17 C 0.069 3.931 18 N -0.393 5.393 19 C -0.354 4.354 20 H 0.077 0.923 21 C -0.255 4.255 22 N -0.636 5.636 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.229 1.229 26 H -0.178 1.178 27 C -0.167 4.167 28 C -0.005 4.005 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.223 0.777 33 H 0.166 0.834 34 H 0.133 0.867 35 H 0.250 0.750 36 H 0.238 0.762 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.197 0.803 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.210 16.033 -17.890 24.125 hybrid contribution 1.433 -1.138 0.076 1.831 sum 3.643 14.894 -17.814 23.504 Atomic orbital electron populations 1.20099 0.89205 1.01901 1.02138 1.20676 0.95915 0.90554 1.10034 1.21963 0.81699 0.99941 1.08405 1.41261 1.09015 1.05051 1.57444 0.72928 1.19283 0.93748 0.84386 1.06426 1.20341 0.95781 1.01564 0.94506 1.20793 0.80401 0.77810 0.91410 1.43700 1.27831 1.54912 1.13897 1.90799 1.51709 1.55871 1.47351 1.19941 0.94107 0.91820 1.17794 1.17938 0.75265 0.86025 0.82518 1.90743 1.53758 1.69371 1.32851 1.48193 1.66584 1.12005 1.06124 1.21632 0.99895 0.96182 0.82276 1.22331 0.99006 0.96987 0.99399 1.20365 0.92874 0.90322 0.89510 1.42797 1.38188 1.55964 1.02352 1.19025 1.11978 1.21976 0.82445 0.92260 1.25439 1.02246 1.02264 0.95510 1.69884 1.42003 1.47420 1.04316 0.85459 0.79910 0.78388 0.78305 1.20265 1.22882 1.17826 1.22087 0.99940 0.99800 0.94859 1.21549 0.97999 0.80144 1.00816 0.90829 0.89864 0.94594 0.77710 0.83398 0.86697 0.75022 0.76230 0.88527 0.90830 0.91735 0.91942 0.93587 0.80295 0.93522 0.90265 0.91865 0.90179 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.35 71.24 0.74 -0.79 16 2 C -0.17 -3.78 6.36 -18.52 -0.12 -3.90 16 3 C 0.01 0.15 11.82 83.12 0.98 1.13 16 4 N -0.53 -8.14 5.90 -182.72 -1.08 -9.21 16 5 H 0.43 3.41 8.96 -92.71 -0.83 2.58 16 6 C 0.08 1.70 5.53 41.78 0.23 1.94 16 7 C -0.08 -1.38 6.01 29.10 0.17 -1.21 16 8 C 0.51 11.25 8.09 87.66 0.71 11.96 16 9 N -0.84 -11.26 8.87 -173.53 -1.54 -12.80 16 10 O -0.58 -19.27 16.87 -3.02 -0.05 -19.33 16 11 C -0.23 -6.19 4.05 -19.04 -0.08 -6.27 16 12 C 0.59 19.21 7.18 86.62 0.62 19.83 16 13 O -0.59 -24.09 16.52 -4.14 -0.07 -24.16 16 14 N -0.60 -16.75 2.98 -823.79 -2.45 -19.21 16 15 C 0.12 3.08 6.31 86.22 0.54 3.62 16 16 C -0.14 -4.04 5.64 30.53 0.17 -3.87 16 17 C 0.18 6.11 2.73 45.02 0.12 6.24 16 18 N -0.75 -32.56 4.92 -322.80 -1.59 -34.15 16 19 C -0.22 -12.04 10.41 84.03 0.87 -11.16 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 21 C -0.06 -3.59 5.50 84.86 0.47 -3.13 16 22 N -0.99 -61.47 13.97 21.65 0.30 -61.17 16 23 Si 0.95 43.71 27.74 68.60 1.90 45.61 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.25 -10.51 6.52 99.48 0.65 -9.86 16 27 C -0.13 -3.73 5.55 30.67 0.17 -3.56 16 28 C 0.12 3.27 6.44 86.36 0.56 3.83 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.21 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 2.03 8.05 -2.39 -0.02 2.01 16 35 H 0.42 2.79 8.83 -92.70 -0.82 1.97 16 36 H 0.41 5.09 8.93 -92.71 -0.83 4.26 16 37 H 0.10 2.21 6.23 -2.39 -0.01 2.19 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 42 H 0.36 15.27 5.66 -92.71 -0.52 14.75 16 43 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.08 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -86.66 388.06 -0.43 -87.09 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -2.02 Total: 32.67 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 6.17 Total: 14.65 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -6.36 Total: -136.54 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -0.12 Total: -43.49 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.90 Total: 45.61 kcal Total: -86.66 -0.43 -87.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997026690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.127 kcal (2) G-P(sol) polarization free energy of solvation -86.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds