Wall clock time and date at job start Tue Mar 31 2020 19:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33228 * 126.02032 * 2 1 4 4 C 1.31543 * 109.76183 * 179.97438 * 3 2 1 5 5 O 1.35201 * 125.49063 * 179.97438 * 4 3 2 6 6 N 1.34952 * 109.01307 * 359.72879 * 4 3 2 7 7 H 0.97000 * 126.54057 * 180.27357 * 6 4 3 8 8 C 1.36722 * 126.01989 * 179.97438 * 2 1 3 9 9 C 1.46381 * 126.82305 * 0.02562 * 8 2 1 10 10 O 1.21732 * 119.99883 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00202 * 180.02562 * 9 8 2 12 12 C 1.46498 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.53005 * 115.55150 * 179.97438 * 12 11 9 14 14 C 1.53046 * 109.45853 * 34.41162 * 13 12 11 15 15 C 1.53186 * 109.31235 * 178.61678 * 14 13 12 16 16 N 1.46927 * 108.77731 * 54.63709 * 15 14 13 17 17 C 1.36932 * 120.63177 * 126.41349 * 16 15 14 18 18 H 1.08004 * 120.00038 * 207.66728 * 17 16 15 19 19 C 1.38814 * 119.99982 * 27.66313 * 17 16 15 20 20 N 1.31612 * 120.00200 * 17.37133 * 19 17 16 21 21 Si 1.86798 * 119.99944 * 197.36766 * 19 17 16 22 22 H 1.48495 * 109.47316 * 89.99828 * 21 19 17 23 23 H 1.48500 * 109.47279 * 210.00580 * 21 19 17 24 24 H 1.48504 * 109.47339 * 329.99883 * 21 19 17 25 25 C 1.46931 * 118.73618 * 306.39136 * 16 15 14 26 26 C 1.53046 * 109.45805 * 274.34940 * 13 12 11 27 27 C 1.52997 * 117.49735 * 325.66112 * 12 11 9 28 28 C 1.53001 * 117.50109 * 34.32271 * 12 11 9 29 29 H 1.09001 * 109.47548 * 270.00463 * 1 2 3 30 30 H 1.09006 * 109.47273 * 29.99736 * 1 2 3 31 31 H 1.08998 * 109.47192 * 149.99739 * 1 2 3 32 32 H 0.96702 * 113.99805 * 90.02983 * 5 4 3 33 33 H 0.97005 * 119.99578 * 359.97438 * 11 9 8 34 34 H 1.08992 * 109.45135 * 154.38105 * 13 12 11 35 35 H 1.09002 * 109.49865 * 298.57148 * 14 13 12 36 36 H 1.09002 * 109.49485 * 58.66167 * 14 13 12 37 37 H 1.08996 * 109.58858 * 174.42315 * 15 14 13 38 38 H 1.09000 * 109.58501 * 294.85104 * 15 14 13 39 39 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.58954 * 293.81785 * 25 16 15 41 41 H 1.09000 * 109.58307 * 173.39048 * 25 16 15 42 42 H 1.08999 * 109.49462 * 301.33247 * 26 13 12 43 43 H 1.08992 * 109.49796 * 61.39692 * 26 13 12 44 44 H 1.09001 * 117.50021 * 215.00185 * 27 12 11 45 45 H 1.09000 * 117.50181 * 0.03252 * 27 12 11 46 46 H 1.08996 * 117.49512 * 359.97438 * 28 12 11 47 47 H 1.09001 * 117.49577 * 144.97305 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7093 0.0006 5 8 4.6149 1.5463 0.0002 6 7 3.6181 -0.6387 0.0070 7 1 4.4242 -1.1781 0.0125 8 6 2.3109 -1.1058 0.0005 9 6 1.8791 -2.5045 0.0006 10 8 0.6922 -2.7751 0.0007 11 7 2.7955 -3.4927 0.0016 12 6 2.3634 -4.8925 0.0023 13 6 3.4876 -5.9303 0.0028 14 6 4.6697 -5.4009 0.8181 15 6 5.7796 -6.4565 0.8454 16 7 6.1163 -6.8244 -0.5367 17 6 7.4105 -6.7620 -0.9797 18 1 7.6154 -6.5895 -2.0260 19 6 8.4591 -6.9203 -0.0839 20 7 8.2406 -7.4599 1.0964 21 14 10.1804 -6.3676 -0.5539 22 1 10.3744 -4.9526 -0.1473 23 1 11.1803 -7.2223 0.1353 24 1 10.3552 -6.4886 -2.0237 25 6 5.0381 -7.2610 -1.4342 26 6 3.9365 -6.1964 -1.4359 27 6 1.0839 -5.2364 0.7675 28 6 1.0844 -5.2374 -0.7633 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 4.9239 1.7901 0.8836 33 1 3.7413 -3.2771 0.0019 34 1 3.1258 -6.8572 0.4477 35 1 5.0478 -4.4872 0.3596 36 1 4.3436 -5.1895 1.8365 37 1 6.6608 -6.0475 1.3396 38 1 5.4321 -7.3381 1.3839 39 1 8.9733 -7.5709 1.7222 40 1 4.6302 -8.2083 -1.0816 41 1 5.4300 -7.3827 -2.4440 42 1 3.0886 -6.5512 -2.0218 43 1 4.3210 -5.2751 -1.8733 44 1 1.0430 -6.2020 1.2715 45 1 0.5634 -4.4211 1.2699 46 1 0.5643 -4.4227 -1.2671 47 1 1.0441 -6.2034 -1.2666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000180733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:45 Heat of formation + Delta-G solvation = 33.790634 kcal Electronic energy + Delta-G solvation = -29677.279443 eV Core-core repulsion = 25670.009643 eV Total energy + Delta-G solvation = -4007.269800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.55575 -40.38482 -38.18447 -37.63541 -36.03905 -34.02755 -32.84895 -32.73544 -30.85166 -30.54348 -29.73266 -27.32857 -25.65140 -23.62198 -22.85867 -22.63056 -21.91522 -21.62189 -20.25578 -19.91513 -19.63151 -18.95339 -18.18860 -16.99055 -16.68981 -16.09649 -15.42325 -15.13428 -14.96364 -14.77997 -14.14896 -14.02426 -13.76239 -13.64657 -13.53742 -13.38306 -13.11569 -12.87441 -12.79986 -12.62545 -12.41825 -12.19835 -11.60430 -11.31483 -11.18480 -11.09102 -10.82385 -10.80143 -10.59911 -10.47282 -10.36875 -10.36049 -10.19257 -9.98083 -9.88758 -9.64861 -9.42877 -8.78583 -8.57112 -8.46487 -6.76714 -5.87708 -3.29886 0.88297 2.06783 2.38874 2.90707 3.04655 3.29648 3.37827 3.38842 3.51926 4.04689 4.41494 4.42581 4.59960 4.75624 4.81979 5.05810 5.13378 5.25924 5.27950 5.32802 5.51008 5.59848 5.61054 5.66266 5.71368 5.79600 5.83367 5.89624 5.99583 6.09792 6.21394 6.22643 6.33389 6.40668 6.41809 6.42594 6.47119 6.61772 6.63594 6.73333 6.91086 7.17152 7.22877 7.32947 7.52459 7.54105 7.71243 8.00015 8.35994 9.12716 9.76084 10.32722 11.20722 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003513 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.435939 B = 7969.484497 C = 9870.058670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.113 3.887 3 N -0.490 5.490 4 C 0.413 3.587 5 O -0.440 6.440 6 N -0.555 5.555 7 H 0.425 0.575 8 C -0.083 4.083 9 C 0.595 3.405 10 O -0.519 6.519 11 N -0.686 5.686 12 C 0.106 3.894 13 C -0.043 4.043 14 C -0.133 4.133 15 C 0.171 3.829 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.144 3.856 26 C -0.124 4.124 27 C -0.177 4.177 28 C -0.175 4.175 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.408 0.592 33 H 0.401 0.599 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.019 0.981 39 H 0.254 0.746 40 H 0.018 0.982 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.093 0.907 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.297 11.901 0.608 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.021 4.021 3 N -0.221 5.221 4 C 0.112 3.888 5 O -0.242 6.242 6 N -0.173 5.173 7 H 0.264 0.736 8 C -0.198 4.198 9 C 0.382 3.618 10 O -0.396 6.396 11 N -0.336 5.336 12 C 0.020 3.980 13 C -0.062 4.062 14 C -0.173 4.173 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.018 3.982 26 C -0.164 4.164 27 C -0.215 4.215 28 C -0.213 4.213 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.266 0.734 33 H 0.237 0.763 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.213 12.493 0.122 18.184 hybrid contribution 2.564 -0.483 0.361 2.634 sum -10.650 12.009 0.482 16.058 Atomic orbital electron populations 1.20341 0.85884 1.03980 1.03311 1.20940 0.96877 0.85813 0.98519 1.70303 0.98566 1.30333 1.22885 1.20195 0.87416 0.78690 1.02498 1.84849 1.43276 1.61498 1.34558 1.43784 1.08954 1.08054 1.56506 0.73569 1.20867 0.82990 0.95308 1.20622 1.16670 0.85999 0.82239 0.76879 1.90791 1.15857 1.82460 1.50525 1.45328 1.09407 1.04992 1.73857 1.20969 0.89990 0.81078 1.06004 1.20795 0.92413 0.95322 0.97634 1.22213 0.96778 1.00496 0.97781 1.20766 0.95165 0.93216 0.86322 1.44071 1.02992 1.75960 1.08501 1.19206 0.81877 1.42989 0.94243 0.91663 1.25031 0.97891 0.99294 0.97393 1.70025 1.31316 1.44955 1.08360 0.86305 0.84398 0.78183 0.77983 1.21538 1.21721 1.20418 1.20922 0.88991 0.93488 0.94848 1.22059 0.98790 1.00806 0.94717 1.23462 1.00057 1.02901 0.95065 1.23378 1.00008 1.02988 0.94920 0.90454 0.90897 0.88852 0.73385 0.76289 0.90067 0.93482 0.92968 0.89379 0.96248 0.93599 0.96407 0.92768 0.92766 0.92592 0.88911 0.87535 0.87539 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.87 36.00 0.36 -0.45 16 2 C 0.11 1.40 7.14 -82.54 -0.59 0.81 16 3 N -0.49 -6.25 11.22 -10.83 -0.12 -6.37 16 4 C 0.41 4.46 9.43 -89.58 -0.84 3.62 16 5 O -0.44 -3.66 13.62 -17.30 -0.24 -3.89 16 6 N -0.55 -5.50 6.12 -10.90 -0.07 -5.57 16 7 H 0.42 3.29 8.32 -40.82 -0.34 2.95 16 8 C -0.08 -0.99 7.08 -81.97 -0.58 -1.57 16 9 C 0.60 7.70 7.48 -12.98 -0.10 7.60 16 10 O -0.52 -7.45 10.27 5.16 0.05 -7.40 16 11 N -0.69 -8.56 5.38 -48.99 -0.26 -8.82 16 12 C 0.11 1.43 2.48 -131.82 -0.33 1.10 16 13 C -0.04 -0.64 2.28 -90.57 -0.21 -0.84 16 14 C -0.13 -2.22 4.83 -26.61 -0.13 -2.35 16 15 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 16 N -0.59 -13.90 2.99 -172.32 -0.52 -14.42 16 17 C -0.25 -6.64 9.59 -15.06 -0.14 -6.78 16 18 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 19 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -25.15 11.19 55.49 0.62 -24.53 16 21 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 C 0.14 2.83 6.52 -3.71 -0.02 2.80 16 26 C -0.12 -1.98 5.22 -26.61 -0.14 -2.12 16 27 C -0.18 -2.30 9.37 -26.69 -0.25 -2.55 16 28 C -0.17 -2.27 8.91 -26.69 -0.24 -2.51 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.02 6.46 -51.93 -0.34 0.69 16 32 H 0.41 1.20 9.06 45.56 0.41 1.61 16 33 H 0.40 4.63 5.90 -40.82 -0.24 4.39 16 34 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 35 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 42 H 0.05 0.77 7.24 -51.93 -0.38 0.39 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 45 H 0.11 1.49 6.37 -51.93 -0.33 1.16 16 46 H 0.11 1.50 6.37 -51.93 -0.33 1.17 16 47 H 0.09 1.13 7.60 -51.93 -0.39 0.74 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -31.72 370.89 -9.20 -40.92 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.91 Total: 8.18 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -3.32 Total: 0.48 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.35 Total: -59.71 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.18 Total: -11.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.72 -9.20 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000180733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.706 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds