Wall clock time and date at job start Tue Mar 31 2020 19:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33228 * 126.02032 * 2 1 4 4 C 1.31543 * 109.76183 * 179.97438 * 3 2 1 5 5 O 1.35201 * 125.49063 * 179.97438 * 4 3 2 6 6 N 1.34952 * 109.01307 * 359.72879 * 4 3 2 7 7 H 0.97000 * 126.54057 * 180.27357 * 6 4 3 8 8 C 1.36722 * 126.01989 * 179.97438 * 2 1 3 9 9 C 1.46381 * 126.82305 * 0.02562 * 8 2 1 10 10 O 1.21732 * 119.99883 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00202 * 180.02562 * 9 8 2 12 12 C 1.46498 * 120.00118 * 179.97438 * 11 9 8 13 13 C 1.53005 * 115.55150 * 179.97438 * 12 11 9 14 14 C 1.53046 * 109.45853 * 34.41162 * 13 12 11 15 15 C 1.53186 * 109.31235 * 178.61678 * 14 13 12 16 16 N 1.46927 * 108.77731 * 54.63709 * 15 14 13 17 17 C 1.36932 * 120.63177 * 126.41349 * 16 15 14 18 18 H 1.08004 * 120.00038 * 207.66728 * 17 16 15 19 19 C 1.38814 * 119.99982 * 27.66313 * 17 16 15 20 20 N 1.31612 * 120.00200 * 17.37133 * 19 17 16 21 21 Si 1.86798 * 119.99944 * 197.36766 * 19 17 16 22 22 H 1.48495 * 109.47316 * 89.99828 * 21 19 17 23 23 H 1.48500 * 109.47279 * 210.00580 * 21 19 17 24 24 H 1.48504 * 109.47339 * 329.99883 * 21 19 17 25 25 C 1.46931 * 118.73618 * 306.39136 * 16 15 14 26 26 C 1.53046 * 109.45805 * 274.34940 * 13 12 11 27 27 C 1.52997 * 117.49735 * 325.66112 * 12 11 9 28 28 C 1.53001 * 117.50109 * 34.32271 * 12 11 9 29 29 H 1.09001 * 109.47548 * 270.00463 * 1 2 3 30 30 H 1.09006 * 109.47273 * 29.99736 * 1 2 3 31 31 H 1.08998 * 109.47192 * 149.99739 * 1 2 3 32 32 H 0.96702 * 113.99805 * 90.02983 * 5 4 3 33 33 H 0.97005 * 119.99578 * 359.97438 * 11 9 8 34 34 H 1.08992 * 109.45135 * 154.38105 * 13 12 11 35 35 H 1.09002 * 109.49865 * 298.57148 * 14 13 12 36 36 H 1.09002 * 109.49485 * 58.66167 * 14 13 12 37 37 H 1.08996 * 109.58858 * 174.42315 * 15 14 13 38 38 H 1.09000 * 109.58501 * 294.85104 * 15 14 13 39 39 H 0.96996 * 120.00390 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.58954 * 293.81785 * 25 16 15 41 41 H 1.09000 * 109.58307 * 173.39048 * 25 16 15 42 42 H 1.08999 * 109.49462 * 301.33247 * 26 13 12 43 43 H 1.08992 * 109.49796 * 61.39692 * 26 13 12 44 44 H 1.09001 * 117.50021 * 215.00185 * 27 12 11 45 45 H 1.09000 * 117.50181 * 0.03252 * 27 12 11 46 46 H 1.08996 * 117.49512 * 359.97438 * 28 12 11 47 47 H 1.09001 * 117.49577 * 144.97305 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7093 0.0006 5 8 4.6149 1.5463 0.0002 6 7 3.6181 -0.6387 0.0070 7 1 4.4242 -1.1781 0.0125 8 6 2.3109 -1.1058 0.0005 9 6 1.8791 -2.5045 0.0006 10 8 0.6922 -2.7751 0.0007 11 7 2.7955 -3.4927 0.0016 12 6 2.3634 -4.8925 0.0023 13 6 3.4876 -5.9303 0.0028 14 6 4.6697 -5.4009 0.8181 15 6 5.7796 -6.4565 0.8454 16 7 6.1163 -6.8244 -0.5367 17 6 7.4105 -6.7620 -0.9797 18 1 7.6154 -6.5895 -2.0260 19 6 8.4591 -6.9203 -0.0839 20 7 8.2406 -7.4599 1.0964 21 14 10.1804 -6.3676 -0.5539 22 1 10.3744 -4.9526 -0.1473 23 1 11.1803 -7.2223 0.1353 24 1 10.3552 -6.4886 -2.0237 25 6 5.0381 -7.2610 -1.4342 26 6 3.9365 -6.1964 -1.4359 27 6 1.0839 -5.2364 0.7675 28 6 1.0844 -5.2374 -0.7633 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 4.9239 1.7901 0.8836 33 1 3.7413 -3.2771 0.0019 34 1 3.1258 -6.8572 0.4477 35 1 5.0478 -4.4872 0.3596 36 1 4.3436 -5.1895 1.8365 37 1 6.6608 -6.0475 1.3396 38 1 5.4321 -7.3381 1.3839 39 1 8.9733 -7.5709 1.7222 40 1 4.6302 -8.2083 -1.0816 41 1 5.4300 -7.3827 -2.4440 42 1 3.0886 -6.5512 -2.0218 43 1 4.3210 -5.2751 -1.8733 44 1 1.0430 -6.2020 1.2715 45 1 0.5634 -4.4211 1.2699 46 1 0.5643 -4.4227 -1.2671 47 1 1.0441 -6.2034 -1.2666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000180733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:44 Heat of formation + Delta-G solvation = 9.493795 kcal Electronic energy + Delta-G solvation = -29678.333033 eV Core-core repulsion = 25670.009643 eV Total energy + Delta-G solvation = -4008.323390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.40225 -41.43716 -39.40167 -38.44733 -37.38087 -34.94717 -34.55992 -33.67533 -32.18811 -31.71457 -31.34420 -28.20774 -27.37235 -24.79812 -24.04361 -24.02491 -22.99263 -22.76590 -21.26148 -21.15600 -20.45840 -20.24181 -19.04443 -18.72206 -17.62197 -17.07464 -16.79350 -16.43447 -16.06337 -15.86650 -15.55252 -15.33625 -15.01142 -14.91349 -14.77545 -14.60281 -14.32944 -14.21276 -13.92848 -13.62914 -13.37419 -13.16114 -13.01672 -12.94298 -12.64057 -12.54067 -12.35587 -12.13944 -12.00304 -11.90458 -11.78998 -11.50284 -11.46769 -11.22522 -11.15470 -10.98346 -10.74012 -10.52996 -9.74468 -9.42124 -8.67709 -7.87520 -5.31937 0.02016 1.28890 1.45954 1.48001 1.53480 1.56275 1.92571 2.09696 2.50888 2.77840 2.99551 3.26291 3.54860 3.59548 3.71210 3.75807 3.93106 4.02549 4.03487 4.20718 4.34241 4.42409 4.48296 4.51959 4.67584 4.73721 4.84045 4.87062 4.92066 4.93708 4.96809 5.01365 5.08241 5.18789 5.23420 5.25478 5.37004 5.40514 5.44593 5.50196 5.57322 5.65635 5.72328 5.77366 6.31715 6.39419 6.60506 6.66168 7.02279 7.15911 7.87687 8.38522 9.18414 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.003513 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.435939 B = 7969.484497 C = 9870.058670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.104 3.896 3 N -0.517 5.517 4 C 0.423 3.577 5 O -0.443 6.443 6 N -0.545 5.545 7 H 0.434 0.566 8 C -0.095 4.095 9 C 0.597 3.403 10 O -0.535 6.535 11 N -0.683 5.683 12 C 0.105 3.895 13 C -0.033 4.033 14 C -0.118 4.118 15 C 0.177 3.823 16 N -0.609 5.609 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.283 1.283 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.139 3.861 26 C -0.111 4.111 27 C -0.172 4.172 28 C -0.168 4.168 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.432 0.568 33 H 0.405 0.595 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.055 0.945 38 H -0.005 1.005 39 H 0.249 0.751 40 H 0.014 0.986 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.820 12.999 0.011 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 N -0.249 5.249 4 C 0.121 3.879 5 O -0.248 6.248 6 N -0.164 5.164 7 H 0.276 0.724 8 C -0.210 4.210 9 C 0.385 3.615 10 O -0.413 6.413 11 N -0.333 5.333 12 C 0.018 3.982 13 C -0.052 4.052 14 C -0.157 4.157 15 C 0.052 3.948 16 N -0.333 5.333 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.791 3.209 22 H -0.210 1.210 23 H -0.225 1.225 24 H -0.196 1.196 25 C 0.014 3.986 26 C -0.150 4.150 27 C -0.210 4.210 28 C -0.206 4.206 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.294 0.706 33 H 0.242 0.758 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.013 0.987 39 H 0.058 0.942 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.731 13.602 -0.477 19.333 hybrid contribution 2.742 -0.820 0.533 2.911 sum -10.988 12.782 0.057 16.856 Atomic orbital electron populations 1.20342 0.85049 1.03980 1.03803 1.21265 0.97702 0.85938 0.98228 1.70297 0.99509 1.30830 1.24305 1.20275 0.87566 0.79119 1.00949 1.84814 1.42316 1.60897 1.36763 1.43674 1.08767 1.07924 1.56031 0.72386 1.20701 0.83767 0.94758 1.21777 1.16720 0.85755 0.82533 0.76472 1.90784 1.16499 1.82773 1.51281 1.45245 1.09610 1.04593 1.73849 1.20751 0.89447 0.81015 1.06953 1.20635 0.92116 0.95843 0.96605 1.21982 0.95594 0.98904 0.99259 1.20575 0.95461 0.93515 0.85282 1.44330 1.03117 1.76516 1.09339 1.19501 0.83363 1.41985 0.94281 0.91763 1.25713 1.01191 0.99882 0.97522 1.70174 1.31930 1.46530 1.09318 0.85342 0.80157 0.77585 0.77812 1.20988 1.22477 1.19635 1.21069 0.89085 0.94624 0.93824 1.21895 0.98097 0.99271 0.95709 1.23456 0.99247 1.03125 0.95179 1.23370 0.99054 1.03249 0.94931 0.89677 0.90051 0.89590 0.70564 0.75785 0.90056 0.92609 0.91547 0.92697 0.98679 0.94160 0.96764 0.93071 0.90255 0.92847 0.87792 0.88437 0.88460 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 9.87 71.23 0.70 -0.77 16 2 C 0.10 2.45 7.14 41.99 0.30 2.75 16 3 N -0.52 -12.55 11.22 -301.67 -3.39 -15.93 16 4 C 0.42 8.39 9.43 179.99 1.70 10.09 16 5 O -0.44 -6.37 13.62 -84.82 -1.16 -7.53 16 6 N -0.54 -9.86 6.12 -300.13 -1.84 -11.70 16 7 H 0.43 5.88 8.32 -92.71 -0.77 5.10 16 8 C -0.10 -2.15 7.08 39.80 0.28 -1.86 16 9 C 0.60 14.54 7.48 86.36 0.65 15.19 16 10 O -0.54 -14.69 10.27 -4.45 -0.05 -14.73 16 11 N -0.68 -15.67 5.38 -427.10 -2.30 -17.97 16 12 C 0.11 2.58 2.48 3.61 0.01 2.58 16 13 C -0.03 -0.92 2.28 -10.76 -0.02 -0.94 16 14 C -0.12 -3.79 4.83 30.67 0.15 -3.64 16 15 C 0.18 7.87 5.31 86.36 0.46 8.33 16 16 N -0.61 -28.63 2.99 -699.10 -2.09 -30.73 16 17 C -0.26 -13.71 9.59 84.03 0.81 -12.90 16 18 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 19 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 20 N -0.93 -53.19 11.19 21.65 0.24 -52.95 16 21 Si 0.96 43.13 29.59 68.60 2.03 45.16 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 C 0.14 5.35 6.52 86.36 0.56 5.92 16 26 C -0.11 -3.28 5.22 30.67 0.16 -3.12 16 27 C -0.17 -4.08 9.37 30.62 0.29 -3.80 16 28 C -0.17 -3.95 8.91 30.62 0.27 -3.67 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.09 1.83 6.46 -2.39 -0.02 1.81 16 32 H 0.43 1.47 9.06 -74.06 -0.67 0.80 16 33 H 0.41 8.49 5.90 -92.70 -0.55 7.94 16 34 H 0.08 2.32 7.90 -2.39 -0.02 2.30 16 35 H 0.06 1.69 6.50 -2.39 -0.02 1.68 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 2.80 6.04 -2.39 -0.01 2.78 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 42 H 0.08 1.99 7.24 -2.39 -0.02 1.97 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.10 2.24 8.05 -2.39 -0.02 2.22 16 45 H 0.10 2.55 6.37 -2.39 -0.02 2.54 16 46 H 0.10 2.54 6.37 -2.39 -0.02 2.52 16 47 H 0.11 2.23 7.60 -2.39 -0.02 2.21 16 Total: -1.00 -68.20 370.89 -2.77 -70.96 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.95 Total: 23.40 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.72 Total: 12.02 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -9.37 Total: -129.27 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.20 Total: -22.26 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.20 -2.77 -70.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000180733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.458 kcal (2) G-P(sol) polarization free energy of solvation -68.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds