Wall clock time and date at job start Tue Mar 31 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34487 * 126.83303 * 2 1 4 4 N 1.36446 * 108.85413 * 180.24937 * 3 2 1 5 5 H 0.96994 * 124.85379 * 179.76488 * 4 3 2 6 6 C 1.34659 * 110.29650 * 359.75179 * 4 3 2 7 7 C 1.50708 * 125.80099 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46996 * 264.97608 * 7 6 4 9 9 N 1.34779 * 119.99947 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00182 * 359.97438 * 8 7 6 11 11 C 1.36762 * 108.40121 * 359.97438 * 6 4 3 12 12 C 1.47268 * 126.94623 * 179.97438 * 11 6 4 13 13 O 1.21629 * 119.99317 * 90.00603 * 12 11 6 14 14 N 1.34773 * 120.00217 * 270.00445 * 12 11 6 15 15 C 1.46931 * 120.60493 * 0.02562 * 14 12 11 16 16 C 1.53196 * 108.77131 * 233.53550 * 15 14 12 17 17 C 1.53039 * 109.33748 * 305.41286 * 16 15 14 18 18 C 1.53045 * 109.53694 * 61.35198 * 17 16 15 19 19 H 1.08993 * 109.49877 * 58.58562 * 18 17 16 20 20 N 1.46498 * 109.49654 * 178.68265 * 18 17 16 21 21 C 1.36937 * 120.00043 * 204.99745 * 20 18 17 22 22 H 1.07997 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38819 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31611 * 119.99870 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99685 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46981 * 90.00055 * 25 23 21 27 27 H 1.48505 * 109.46617 * 209.99761 * 25 23 21 28 28 H 1.48497 * 109.47297 * 329.99843 * 25 23 21 29 29 C 1.46928 * 120.62770 * 180.02562 * 14 12 11 30 30 H 1.08994 * 109.47596 * 270.15024 * 1 2 3 31 31 H 1.09002 * 109.47157 * 30.15320 * 1 2 3 32 32 H 1.09001 * 109.46996 * 150.14422 * 1 2 3 33 33 H 1.07992 * 125.57091 * 359.96388 * 3 2 1 34 34 H 1.09000 * 109.46825 * 24.97304 * 7 6 4 35 35 H 1.08996 * 109.46911 * 144.97261 * 7 6 4 36 36 H 0.97001 * 119.99599 * 359.97438 * 9 8 7 37 37 H 0.96993 * 119.99989 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.56502 * 113.76244 * 15 14 12 39 39 H 1.09001 * 109.61713 * 353.33665 * 15 14 12 40 40 H 1.09002 * 109.49815 * 185.44599 * 16 15 14 41 41 H 1.09000 * 109.49595 * 65.37996 * 16 15 14 42 42 H 1.09001 * 109.45915 * 181.36781 * 17 16 15 43 43 H 1.08995 * 109.45917 * 301.32981 * 17 16 15 44 44 H 0.97004 * 120.00448 * 25.00033 * 20 18 17 45 45 H 0.96998 * 120.00356 * 179.97438 * 24 23 21 46 46 H 1.08997 * 109.58597 * 6.64243 * 29 14 12 47 47 H 1.09004 * 109.58075 * 246.21993 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3840 1.2412 -0.0100 6 6 3.6655 -0.6902 -0.0038 7 6 4.9225 -1.5217 -0.0081 8 6 5.2666 -1.9047 -1.4244 9 7 6.3585 -2.6545 -1.6733 10 8 4.5605 -1.5390 -2.3401 11 6 2.3864 -1.1741 0.0036 12 6 1.9749 -2.5881 0.0074 13 8 1.8106 -3.1707 1.0624 14 7 1.7803 -3.2365 -1.1580 15 6 1.9755 -2.5457 -2.4400 16 6 0.7088 -2.7091 -3.2859 17 6 0.3755 -4.1970 -3.4172 18 6 0.1094 -4.7862 -2.0301 19 1 -0.7138 -4.2495 -1.5587 20 7 -0.2402 -6.2030 -2.1596 21 6 -0.9952 -6.8130 -1.1936 22 1 -1.3332 -6.2495 -0.3365 23 6 -1.3269 -8.1553 -1.3165 24 7 -2.0521 -8.7417 -0.3878 25 14 -0.7428 -9.1297 -2.7994 26 1 0.5782 -9.7393 -2.5019 27 1 -1.7247 -10.2009 -3.1057 28 1 -0.6178 -8.2235 -3.9691 29 6 1.3691 -4.6470 -1.1702 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 1.9868 2.1058 -0.0006 34 1 5.7413 -0.9444 0.4213 35 1 4.7638 -2.4231 0.5838 36 1 6.9231 -2.9473 -0.9409 37 1 6.5798 -2.9013 -2.5849 38 1 2.8245 -2.9835 -2.9649 39 1 2.1609 -1.4867 -2.2605 40 1 0.8752 -2.2848 -4.2760 41 1 -0.1203 -2.1918 -2.8031 42 1 -0.5117 -4.3169 -4.0390 43 1 1.2148 -4.7177 -3.8781 44 1 0.0631 -6.7091 -2.9295 45 1 -2.2843 -9.6795 -0.4738 46 1 1.1550 -4.9740 -0.1527 47 1 2.1683 -5.2568 -1.5917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000262650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:06 Heat of formation + Delta-G solvation = -16.721615 kcal Electronic energy + Delta-G solvation = -30318.361478 eV Core-core repulsion = 26308.901303 eV Total energy + Delta-G solvation = -4009.460176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52655 -39.39915 -39.28799 -37.03254 -34.42114 -33.96143 -32.89830 -32.22755 -31.61497 -31.15478 -28.96921 -28.07021 -26.04801 -25.09694 -23.69729 -22.14635 -21.48464 -21.22244 -19.83946 -19.49990 -18.27796 -17.97094 -17.45027 -17.22944 -16.87415 -16.35196 -15.65876 -15.03256 -14.83912 -14.53081 -14.39554 -14.03671 -13.97331 -13.75964 -13.54417 -13.37064 -13.19661 -12.89603 -12.74615 -12.60652 -12.39766 -12.34371 -12.25504 -12.11454 -11.43780 -11.26774 -11.06177 -10.81570 -10.56196 -10.46024 -10.23647 -10.17686 -9.94466 -9.76983 -9.57308 -9.49362 -9.00090 -8.48090 -8.18623 -8.15164 -7.20230 -5.70373 -3.06834 1.96521 2.35155 2.56191 2.95624 3.05054 3.32431 3.41497 3.44139 3.48807 3.65809 4.30541 4.62046 4.64100 4.72793 4.91306 5.04632 5.13020 5.14964 5.30633 5.37606 5.39953 5.51326 5.55115 5.67560 5.82540 5.85784 5.88274 5.94874 6.04370 6.07112 6.14069 6.20647 6.25189 6.29944 6.43938 6.49011 6.55012 6.75036 6.87289 6.89389 6.90709 6.98457 7.10490 7.38437 7.90756 7.96977 8.07116 8.48431 8.65543 9.26430 9.98183 10.17582 11.47924 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003597 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.480035 B = 7781.336517 C = 8431.839992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.130 4.130 3 C -0.010 4.010 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.075 3.925 7 C -0.081 4.081 8 C 0.516 3.484 9 N -0.857 5.857 10 O -0.520 6.520 11 C -0.182 4.182 12 C 0.585 3.415 13 O -0.543 6.543 14 N -0.596 5.596 15 C 0.120 3.880 16 C -0.130 4.130 17 C -0.128 4.128 18 C 0.174 3.826 19 H 0.059 0.941 20 N -0.743 5.743 21 C -0.244 4.244 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.093 3.907 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.168 0.832 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.401 0.599 37 H 0.403 0.597 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.093 0.907 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.720 22.451 -3.128 29.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.137 4.137 3 C -0.138 4.138 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.040 4.040 7 C -0.122 4.122 8 C 0.299 3.701 9 N -0.421 5.421 10 O -0.395 6.395 11 C -0.193 4.193 12 C 0.372 3.628 13 O -0.420 6.420 14 N -0.328 5.328 15 C -0.003 4.003 16 C -0.169 4.169 17 C -0.166 4.166 18 C 0.063 3.937 19 H 0.077 0.923 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.031 4.031 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.185 0.815 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.229 0.771 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.973 22.478 -2.835 28.919 hybrid contribution 1.232 -0.874 -1.055 1.843 sum 19.205 21.604 -3.890 29.167 Atomic orbital electron populations 1.20151 0.89542 1.02285 1.02019 1.20434 0.95242 0.90322 1.07680 1.21407 0.82110 0.98913 1.11413 1.41183 1.08124 1.05589 1.59250 0.75208 1.19018 0.93795 0.83166 1.08044 1.20213 0.95039 1.01298 0.95619 1.20443 0.80410 0.78035 0.91177 1.43828 1.28930 1.56423 1.12947 1.90774 1.48996 1.53444 1.46263 1.20023 0.92241 0.92967 1.14036 1.17570 0.76832 0.84945 0.83488 1.90797 1.51885 1.68368 1.30989 1.48206 1.66524 1.12481 1.05626 1.21697 0.96661 0.98423 0.83554 1.21897 0.98247 0.96998 0.99740 1.21856 1.01399 0.94916 0.98470 1.20448 0.94430 0.85944 0.92830 0.92289 1.42738 1.63516 1.06454 1.25848 1.19130 1.24006 0.93496 1.00736 0.89029 1.24665 0.99987 0.96562 0.97763 1.69704 1.42314 1.11583 1.34423 0.86566 0.78264 0.80190 0.83630 1.21132 1.21773 1.20308 1.22610 0.97777 0.78949 1.03788 0.91619 0.91854 0.91648 0.81484 0.87874 0.86403 0.77106 0.76617 0.91784 0.89032 0.91356 0.91678 0.91610 0.92425 0.80560 0.93095 0.88824 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.35 36.01 0.37 -0.62 16 2 C -0.13 -1.66 6.30 -102.54 -0.65 -2.30 16 3 C -0.01 -0.09 11.82 -16.82 -0.20 -0.29 16 4 N -0.55 -4.67 5.90 -9.11 -0.05 -4.72 16 5 H 0.41 2.05 8.96 -40.82 -0.37 1.68 16 6 C 0.08 0.85 5.67 -81.88 -0.46 0.38 16 7 C -0.08 -0.68 6.01 -29.03 -0.17 -0.86 16 8 C 0.52 4.81 8.09 -10.99 -0.09 4.72 16 9 N -0.86 -4.94 8.87 31.22 0.28 -4.67 16 10 O -0.52 -6.65 13.61 5.56 0.08 -6.57 16 11 C -0.18 -2.67 4.00 -103.35 -0.41 -3.08 16 12 C 0.58 10.62 7.18 -12.59 -0.09 10.53 16 13 O -0.54 -12.04 16.52 5.25 0.09 -11.95 16 14 N -0.60 -10.31 2.97 -174.11 -0.52 -10.83 16 15 C 0.12 1.78 4.99 -3.71 -0.02 1.76 16 16 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 17 C -0.13 -2.13 5.36 -26.69 -0.14 -2.27 16 18 C 0.17 3.58 2.92 -67.83 -0.20 3.38 16 19 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 20 N -0.74 -18.18 4.93 -53.33 -0.26 -18.44 16 21 C -0.24 -7.10 10.41 -15.06 -0.16 -7.26 16 22 H 0.09 2.90 8.06 -52.49 -0.42 2.48 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 25 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 28 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 29 C 0.09 1.87 6.02 -3.73 -0.02 1.84 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.12 1.09 8.05 -51.93 -0.42 0.67 16 36 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 37 H 0.40 2.13 8.93 -40.82 -0.36 1.77 16 38 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 39 H 0.09 1.37 5.55 -51.93 -0.29 1.08 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.36 8.59 5.66 -40.82 -0.23 8.36 16 45 H 0.26 7.91 8.31 -40.82 -0.34 7.58 16 46 H 0.09 2.19 7.00 -51.93 -0.36 1.83 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -38.74 381.88 -8.08 -46.82 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -7.00 Total: 12.05 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.50 Total: 4.02 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: 0.22 Total: -67.89 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.16 Total: -18.52 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.74 -8.08 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000262650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.098 kcal (2) G-P(sol) polarization free energy of solvation -38.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds