Wall clock time and date at job start Tue Mar 31 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34487 * 126.83303 * 2 1 4 4 N 1.36446 * 108.85413 * 180.24937 * 3 2 1 5 5 H 0.96994 * 124.85379 * 179.76488 * 4 3 2 6 6 C 1.34659 * 110.29650 * 359.75179 * 4 3 2 7 7 C 1.50708 * 125.80099 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.46996 * 264.97608 * 7 6 4 9 9 N 1.34779 * 119.99947 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00182 * 359.97438 * 8 7 6 11 11 C 1.36762 * 108.40121 * 359.97438 * 6 4 3 12 12 C 1.47268 * 126.94623 * 179.97438 * 11 6 4 13 13 O 1.21629 * 119.99317 * 90.00603 * 12 11 6 14 14 N 1.34773 * 120.00217 * 270.00445 * 12 11 6 15 15 C 1.46931 * 120.60493 * 0.02562 * 14 12 11 16 16 C 1.53196 * 108.77131 * 233.53550 * 15 14 12 17 17 C 1.53039 * 109.33748 * 305.41286 * 16 15 14 18 18 C 1.53045 * 109.53694 * 61.35198 * 17 16 15 19 19 H 1.08993 * 109.49877 * 58.58562 * 18 17 16 20 20 N 1.46498 * 109.49654 * 178.68265 * 18 17 16 21 21 C 1.36937 * 120.00043 * 204.99745 * 20 18 17 22 22 H 1.07997 * 119.99958 * 0.02562 * 21 20 18 23 23 C 1.38819 * 120.00107 * 179.97438 * 21 20 18 24 24 N 1.31611 * 119.99870 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99685 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.46981 * 90.00055 * 25 23 21 27 27 H 1.48505 * 109.46617 * 209.99761 * 25 23 21 28 28 H 1.48497 * 109.47297 * 329.99843 * 25 23 21 29 29 C 1.46928 * 120.62770 * 180.02562 * 14 12 11 30 30 H 1.08994 * 109.47596 * 270.15024 * 1 2 3 31 31 H 1.09002 * 109.47157 * 30.15320 * 1 2 3 32 32 H 1.09001 * 109.46996 * 150.14422 * 1 2 3 33 33 H 1.07992 * 125.57091 * 359.96388 * 3 2 1 34 34 H 1.09000 * 109.46825 * 24.97304 * 7 6 4 35 35 H 1.08996 * 109.46911 * 144.97261 * 7 6 4 36 36 H 0.97001 * 119.99599 * 359.97438 * 9 8 7 37 37 H 0.96993 * 119.99989 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.56502 * 113.76244 * 15 14 12 39 39 H 1.09001 * 109.61713 * 353.33665 * 15 14 12 40 40 H 1.09002 * 109.49815 * 185.44599 * 16 15 14 41 41 H 1.09000 * 109.49595 * 65.37996 * 16 15 14 42 42 H 1.09001 * 109.45915 * 181.36781 * 17 16 15 43 43 H 1.08995 * 109.45917 * 301.32981 * 17 16 15 44 44 H 0.97004 * 120.00448 * 25.00033 * 20 18 17 45 45 H 0.96998 * 120.00356 * 179.97438 * 24 23 21 46 46 H 1.08997 * 109.58597 * 6.64243 * 29 14 12 47 47 H 1.09004 * 109.58075 * 246.21993 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3840 1.2412 -0.0100 6 6 3.6655 -0.6902 -0.0038 7 6 4.9225 -1.5217 -0.0081 8 6 5.2666 -1.9047 -1.4244 9 7 6.3585 -2.6545 -1.6733 10 8 4.5605 -1.5390 -2.3401 11 6 2.3864 -1.1741 0.0036 12 6 1.9749 -2.5881 0.0074 13 8 1.8106 -3.1707 1.0624 14 7 1.7803 -3.2365 -1.1580 15 6 1.9755 -2.5457 -2.4400 16 6 0.7088 -2.7091 -3.2859 17 6 0.3755 -4.1970 -3.4172 18 6 0.1094 -4.7862 -2.0301 19 1 -0.7138 -4.2495 -1.5587 20 7 -0.2402 -6.2030 -2.1596 21 6 -0.9952 -6.8130 -1.1936 22 1 -1.3332 -6.2495 -0.3365 23 6 -1.3269 -8.1553 -1.3165 24 7 -2.0521 -8.7417 -0.3878 25 14 -0.7428 -9.1297 -2.7994 26 1 0.5782 -9.7393 -2.5019 27 1 -1.7247 -10.2009 -3.1057 28 1 -0.6178 -8.2235 -3.9691 29 6 1.3691 -4.6470 -1.1702 30 1 -0.3634 0.0027 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 1.9868 2.1058 -0.0006 34 1 5.7413 -0.9444 0.4213 35 1 4.7638 -2.4231 0.5838 36 1 6.9231 -2.9473 -0.9409 37 1 6.5798 -2.9013 -2.5849 38 1 2.8245 -2.9835 -2.9649 39 1 2.1609 -1.4867 -2.2605 40 1 0.8752 -2.2848 -4.2760 41 1 -0.1203 -2.1918 -2.8031 42 1 -0.5117 -4.3169 -4.0390 43 1 1.2148 -4.7177 -3.8781 44 1 0.0631 -6.7091 -2.9295 45 1 -2.2843 -9.6795 -0.4738 46 1 1.1550 -4.9740 -0.1527 47 1 2.1683 -5.2568 -1.5917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000262650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:05 Heat of formation + Delta-G solvation = -48.388031 kcal Electronic energy + Delta-G solvation = -30319.734637 eV Core-core repulsion = 26308.901303 eV Total energy + Delta-G solvation = -4010.833334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40989 -40.69734 -40.10212 -38.61022 -36.27253 -34.60985 -34.02168 -33.69547 -32.91683 -32.52793 -30.56895 -29.19321 -26.93026 -26.40365 -25.64633 -23.34094 -23.11754 -21.98183 -21.39226 -20.31520 -19.65887 -19.31571 -18.85939 -17.93115 -17.71718 -17.46089 -16.83750 -16.69471 -16.17730 -15.91367 -15.64954 -15.40710 -15.25368 -15.02374 -14.74801 -14.52330 -14.35683 -14.19700 -14.08996 -13.85659 -13.76302 -13.51714 -13.40284 -13.22901 -13.03949 -12.95249 -12.56981 -12.17455 -12.09620 -11.94194 -11.86691 -11.76099 -11.40741 -11.17699 -11.02256 -10.93689 -10.54780 -9.79679 -9.41652 -9.24669 -9.01168 -8.04307 -5.40779 1.11237 1.36355 1.41595 1.49000 1.59730 1.65343 1.67736 2.13981 2.39312 2.47165 2.81146 3.25994 3.51415 3.57564 3.75523 3.97123 4.04496 4.08935 4.18097 4.19256 4.28277 4.31637 4.33655 4.42457 4.58244 4.63574 4.67344 4.73966 4.83654 4.87420 4.98382 5.01074 5.06501 5.08146 5.15699 5.30593 5.32956 5.42139 5.56022 5.74777 5.85420 5.95609 6.05297 6.19109 6.47850 6.51754 6.76698 7.03686 7.23709 7.38781 7.75946 7.99555 9.17638 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003597 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.480035 B = 7781.336517 C = 8431.839992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.167 4.167 3 C 0.016 3.984 4 N -0.528 5.528 5 H 0.434 0.566 6 C 0.087 3.913 7 C -0.083 4.083 8 C 0.513 3.487 9 N -0.840 5.840 10 O -0.558 6.558 11 C -0.229 4.229 12 C 0.584 3.416 13 O -0.600 6.600 14 N -0.592 5.592 15 C 0.129 3.871 16 C -0.123 4.123 17 C -0.118 4.118 18 C 0.173 3.827 19 H 0.029 0.971 20 N -0.742 5.742 21 C -0.239 4.239 22 H 0.044 0.956 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.293 1.293 28 H -0.246 1.246 29 C 0.106 3.894 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.209 0.791 34 H 0.148 0.852 35 H 0.105 0.895 36 H 0.416 0.584 37 H 0.408 0.592 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.370 0.630 45 H 0.259 0.741 46 H 0.046 0.954 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.739 24.944 -6.019 33.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.173 4.173 3 C -0.113 4.113 4 N -0.123 5.123 5 H 0.274 0.726 6 C -0.031 4.031 7 C -0.123 4.123 8 C 0.297 3.703 9 N -0.405 5.405 10 O -0.436 6.436 11 C -0.239 4.239 12 C 0.374 3.626 13 O -0.481 6.481 14 N -0.323 5.323 15 C 0.007 3.993 16 C -0.162 4.162 17 C -0.156 4.156 18 C 0.063 3.937 19 H 0.047 0.953 20 N -0.386 5.386 21 C -0.370 4.370 22 H 0.062 0.938 23 C -0.253 4.253 24 N -0.634 5.634 25 Si 0.788 3.212 26 H -0.202 1.202 27 H -0.220 1.220 28 H -0.170 1.170 29 C -0.020 4.020 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.226 0.774 34 H 0.166 0.834 35 H 0.123 0.877 36 H 0.247 0.753 37 H 0.240 0.760 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.204 0.796 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.077 25.040 -5.761 33.232 hybrid contribution 0.330 -1.554 -0.030 1.588 sum 21.407 23.486 -5.791 32.301 Atomic orbital electron populations 1.20099 0.89931 1.02157 1.01423 1.20612 0.95536 0.90795 1.10340 1.21910 0.81663 0.99692 1.08081 1.41196 1.08889 1.04855 1.57387 0.72611 1.19239 0.93487 0.84423 1.05926 1.20323 0.95405 1.01151 0.95447 1.20551 0.80719 0.78099 0.90948 1.43695 1.27942 1.54914 1.13906 1.90748 1.50426 1.55243 1.47189 1.19869 0.94591 0.91072 1.18388 1.18220 0.75421 0.86418 0.82575 1.90750 1.54388 1.70041 1.32942 1.48243 1.65900 1.11281 1.06920 1.21767 0.97083 0.98413 0.82033 1.21893 0.97598 0.95241 1.01423 1.21766 1.02326 0.96355 0.95130 1.20563 0.93453 0.83944 0.95694 0.95255 1.42622 1.63094 1.07881 1.24973 1.18961 1.24046 0.93605 1.00362 0.93822 1.25590 1.00431 0.97675 1.01636 1.69912 1.44283 1.12010 1.37232 0.85310 0.77567 0.78365 0.79917 1.20246 1.21961 1.16991 1.22161 0.97829 0.81170 1.00833 0.92572 0.88887 0.94736 0.77430 0.83375 0.87674 0.75340 0.76040 0.91280 0.88439 0.87795 0.92262 0.91031 0.90793 0.79554 0.93179 0.93557 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.35 71.24 0.74 -1.18 16 2 C -0.17 -4.11 6.30 -18.51 -0.12 -4.23 16 3 C 0.02 0.25 11.82 83.12 0.98 1.23 16 4 N -0.53 -7.16 5.90 -182.73 -1.08 -8.24 16 5 H 0.43 2.30 8.96 -92.71 -0.83 1.47 16 6 C 0.09 1.80 5.67 41.78 0.24 2.03 16 7 C -0.08 -1.22 6.01 29.10 0.17 -1.04 16 8 C 0.51 8.44 8.09 87.66 0.71 9.14 16 9 N -0.84 -7.59 8.87 -173.54 -1.54 -9.13 16 10 O -0.56 -13.08 13.61 -3.02 -0.04 -13.12 16 11 C -0.23 -6.72 4.00 -19.04 -0.08 -6.79 16 12 C 0.58 22.47 7.18 86.62 0.62 23.09 16 13 O -0.60 -28.97 16.52 -4.12 -0.07 -29.04 16 14 N -0.59 -21.28 2.97 -823.00 -2.45 -23.72 16 15 C 0.13 3.70 4.99 86.36 0.43 4.13 16 16 C -0.12 -3.28 6.08 30.67 0.19 -3.09 16 17 C -0.12 -3.73 5.36 30.62 0.16 -3.57 16 18 C 0.17 7.36 2.92 45.06 0.13 7.49 16 19 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 20 N -0.74 -36.94 4.93 -322.62 -1.59 -38.53 16 21 C -0.24 -14.62 10.41 84.04 0.88 -13.74 16 22 H 0.04 3.02 8.06 -2.91 -0.02 3.00 16 23 C -0.06 -3.82 5.50 84.87 0.47 -3.35 16 24 N -0.98 -66.01 13.97 21.65 0.30 -65.71 16 25 Si 0.96 46.68 27.74 68.60 1.90 48.58 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.25 -10.57 6.52 99.48 0.65 -9.92 16 29 C 0.11 4.46 6.02 86.35 0.52 4.98 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 1.88 8.05 -2.39 -0.02 1.86 16 36 H 0.42 1.30 8.83 -92.71 -0.82 0.49 16 37 H 0.41 3.30 8.93 -92.71 -0.83 2.47 16 38 H 0.07 1.96 7.18 -2.39 -0.02 1.94 16 39 H 0.10 2.80 5.55 -2.39 -0.01 2.79 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.37 17.09 5.66 -92.70 -0.52 16.56 16 45 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 46 H 0.05 2.38 7.00 -2.39 -0.02 2.37 16 47 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -92.24 381.88 -0.53 -92.77 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -2.02 Total: 31.04 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.04 Total: 15.11 kcal Atomic # 7 Polarization: -138.98 SS G_CDS: -6.35 Total: -145.33 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -0.11 Total: -42.16 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.90 Total: 48.58 kcal Total: -92.24 -0.53 -92.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000262650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.384 kcal (2) G-P(sol) polarization free energy of solvation -92.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds