Wall clock time and date at job start Tue Mar 31 2020 18:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34486 * 126.83365 * 2 1 4 4 N 1.36454 * 108.85681 * 179.71550 * 3 2 1 5 5 H 0.96996 * 124.85253 * 180.27540 * 4 3 2 6 6 C 1.34665 * 110.29388 * 0.44412 * 4 3 2 7 7 C 1.50694 * 125.79716 * 179.82285 * 6 4 3 8 8 C 1.50701 * 109.47461 * 264.68981 * 7 6 4 9 9 N 1.34769 * 120.00344 * 179.72551 * 8 7 6 10 10 O 1.21278 * 119.99602 * 0.02562 * 8 7 6 11 11 C 1.36770 * 108.39812 * 359.55861 * 6 4 3 12 12 C 1.47260 * 126.94147 * 180.25958 * 11 6 4 13 13 O 1.21624 * 119.99665 * 90.00430 * 12 11 6 14 14 N 1.34776 * 120.00271 * 270.00358 * 12 11 6 15 15 C 1.46498 * 120.00013 * 180.02562 * 14 12 11 16 16 H 1.08998 * 109.49898 * 34.99904 * 15 14 12 17 17 C 1.53041 * 109.49925 * 155.06524 * 15 14 12 18 18 C 1.53037 * 109.53898 * 181.28519 * 17 15 14 19 19 C 1.53195 * 109.33759 * 298.67923 * 18 17 15 20 20 N 1.46929 * 108.77412 * 54.62289 * 19 18 17 21 21 C 1.36933 * 120.62829 * 126.36644 * 20 19 18 22 22 H 1.08001 * 119.99762 * 207.69405 * 21 20 19 23 23 C 1.38807 * 120.00366 * 27.69950 * 21 20 19 24 24 N 1.31618 * 119.99818 * 17.35076 * 23 21 20 25 25 Si 1.86798 * 120.00358 * 197.35137 * 23 21 20 26 26 H 1.48491 * 109.47268 * 89.99878 * 25 23 21 27 27 H 1.48506 * 109.47259 * 210.00381 * 25 23 21 28 28 H 1.48504 * 109.47035 * 329.99669 * 25 23 21 29 29 C 1.46925 * 118.73683 * 306.38975 * 20 19 18 30 30 H 1.08997 * 109.47262 * 270.02867 * 1 2 3 31 31 H 1.09004 * 109.46881 * 30.02496 * 1 2 3 32 32 H 1.08994 * 109.47123 * 150.02287 * 1 2 3 33 33 H 1.07999 * 125.57524 * 359.97438 * 3 2 1 34 34 H 1.09001 * 109.47012 * 144.69121 * 7 6 4 35 35 H 1.08996 * 109.47606 * 24.69312 * 7 6 4 36 36 H 0.97004 * 120.00208 * 180.27787 * 9 8 7 37 37 H 0.97002 * 119.99838 * 0.27833 * 9 8 7 38 38 H 0.97001 * 119.99673 * 359.97438 * 14 12 11 39 39 H 1.08996 * 109.45614 * 301.33801 * 17 15 14 40 40 H 1.08999 * 109.46113 * 61.29303 * 17 15 14 41 41 H 1.08995 * 109.49372 * 178.71680 * 18 17 15 42 42 H 1.08989 * 109.49951 * 58.65134 * 18 17 15 43 43 H 1.08997 * 109.58594 * 294.83759 * 19 18 17 44 44 H 1.08995 * 109.58254 * 174.40839 * 19 18 17 45 45 H 0.97003 * 120.00270 * 180.02562 * 24 23 21 46 46 H 1.08995 * 109.58897 * 293.81673 * 29 20 19 47 47 H 1.09008 * 109.70080 * 173.46482 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6112 0.6553 0.0064 5 1 4.3840 1.2413 0.0116 6 6 3.6656 -0.6903 0.0008 7 6 4.9226 -1.5215 0.0014 8 6 5.2737 -1.9023 -1.4138 9 7 6.3702 -2.6465 -1.6591 10 8 4.5726 -1.5344 -2.3324 11 6 2.3864 -1.1741 0.0006 12 6 1.9749 -2.5880 0.0007 13 8 1.8047 -3.1717 1.0540 14 7 1.7870 -3.2353 -1.1664 15 6 1.3772 -4.6418 -1.1663 16 1 0.7091 -4.8260 -0.3249 17 6 0.6510 -4.9625 -2.4747 18 6 0.1943 -6.4231 -2.4620 19 6 1.4191 -7.3366 -2.3516 20 7 2.2012 -6.9387 -1.1731 21 6 2.5372 -7.8583 -0.2158 22 1 2.6939 -7.5424 0.8050 23 6 2.6765 -9.1964 -0.5573 24 7 2.8268 -9.5415 -1.8186 25 14 2.6508 -10.5076 0.7729 26 1 1.2549 -10.9651 0.9901 27 1 3.4889 -11.6583 0.3501 28 1 3.1884 -9.9416 2.0362 29 6 2.6153 -5.5352 -1.0412 30 1 -0.3633 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8901 -0.5134 33 1 1.9868 2.1059 -0.0004 34 1 4.7610 -2.4240 0.5910 35 1 5.7393 -0.9451 0.4358 36 1 6.5984 -2.8882 -2.5704 37 1 6.9311 -2.9405 -0.9244 38 1 1.9225 -2.7697 -2.0065 39 1 -0.2168 -4.3110 -2.5774 40 1 1.3272 -4.8012 -3.3143 41 1 -0.3426 -6.6443 -3.3844 42 1 -0.4631 -6.5912 -1.6091 43 1 2.0317 -7.2363 -3.2475 44 1 1.0944 -8.3713 -2.2423 45 1 2.9238 -10.4766 -2.0574 46 1 3.3255 -5.2880 -1.8301 47 1 3.0814 -5.3795 -0.0681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008604497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:05 Heat of formation + Delta-G solvation = -18.352500 kcal Electronic energy + Delta-G solvation = -29956.084020 eV Core-core repulsion = 25946.553124 eV Total energy + Delta-G solvation = -4009.530896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41814 -39.26047 -39.02632 -37.08116 -34.07179 -33.80137 -32.88989 -32.32882 -31.60477 -30.38710 -28.97422 -27.81597 -25.99888 -25.20985 -23.21201 -22.01836 -21.37986 -20.93859 -19.52851 -19.48284 -18.77287 -18.04124 -17.11735 -16.77157 -16.67911 -16.08455 -15.53815 -15.17208 -14.68584 -14.47037 -14.42336 -13.87352 -13.68338 -13.61215 -13.44006 -13.30526 -13.02134 -12.89841 -12.68893 -12.52895 -12.31479 -12.24737 -12.15529 -11.72649 -11.30273 -11.01911 -10.80746 -10.73074 -10.18181 -10.15687 -10.14019 -9.88078 -9.82801 -9.79655 -9.52392 -9.37500 -8.63455 -8.52526 -8.30523 -8.17051 -6.60794 -5.72857 -3.14676 2.01068 2.50114 2.56978 2.99064 3.11139 3.43291 3.48956 3.49777 3.52080 3.84591 4.38846 4.56959 4.71903 4.86593 4.98122 5.17236 5.27441 5.36658 5.38768 5.46068 5.53838 5.66339 5.71933 5.75246 5.87344 5.91579 6.01937 6.16993 6.20818 6.29837 6.37208 6.63958 6.64516 6.70372 6.76389 6.80603 6.85100 6.92299 6.94806 7.14885 7.15781 7.41205 7.43975 7.71441 7.88022 8.04078 8.12400 8.50851 8.73873 9.27904 9.90706 10.47046 11.35621 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013864 B = 0.003510 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.188742 B = 7975.788291 C = 8629.834074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.132 4.132 3 C -0.011 4.011 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.084 3.916 7 C -0.084 4.084 8 C 0.520 3.480 9 N -0.853 5.853 10 O -0.529 6.529 11 C -0.191 4.191 12 C 0.588 3.412 13 O -0.540 6.540 14 N -0.711 5.711 15 C 0.125 3.875 16 H 0.085 0.915 17 C -0.115 4.115 18 C -0.139 4.139 19 C 0.168 3.832 20 N -0.588 5.588 21 C -0.248 4.248 22 H 0.066 0.934 23 C 0.002 3.998 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.146 3.854 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.167 0.833 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.404 0.596 37 H 0.402 0.598 38 H 0.399 0.601 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.089 0.911 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 21.956 0.232 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C -0.139 4.139 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.032 4.032 7 C -0.125 4.125 8 C 0.303 3.697 9 N -0.417 5.417 10 O -0.404 6.404 11 C -0.202 4.202 12 C 0.373 3.627 13 O -0.417 6.417 14 N -0.361 5.361 15 C 0.020 3.980 16 H 0.103 0.897 17 C -0.153 4.153 18 C -0.179 4.179 19 C 0.042 3.958 20 N -0.311 5.311 21 C -0.377 4.377 22 H 0.084 0.916 23 C -0.197 4.197 24 N -0.549 5.549 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.204 1.204 29 C 0.019 3.981 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.185 0.815 34 H 0.139 0.861 35 H 0.122 0.878 36 H 0.235 0.765 37 H 0.230 0.770 38 H 0.233 0.767 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.262 21.763 0.471 22.011 hybrid contribution 0.913 -0.451 0.176 1.034 sum 4.176 21.312 0.647 21.727 Atomic orbital electron populations 1.20123 0.89695 1.02106 1.01839 1.20404 0.95125 0.90449 1.07947 1.21396 0.82177 0.98875 1.11483 1.41211 1.08140 1.05669 1.59109 0.75160 1.19083 0.93928 0.83109 1.07077 1.20256 0.94919 1.01407 0.95869 1.20359 0.80445 0.77872 0.91001 1.43806 1.28531 1.56318 1.13037 1.90769 1.49841 1.53722 1.46069 1.20078 0.92259 0.92963 1.14886 1.17452 0.76657 0.84757 0.83858 1.90805 1.51118 1.68362 1.31416 1.46187 1.68953 1.12674 1.08281 1.21710 0.98621 0.79031 0.98680 0.89728 1.21667 0.99044 0.97941 0.96624 1.22175 1.00724 0.94591 1.00410 1.20833 0.88491 0.97997 0.88449 1.43994 1.60234 1.02909 1.23915 1.19241 1.41709 0.87844 0.88953 0.91595 1.25002 1.00444 0.98149 0.96056 1.70047 1.52925 1.16241 1.15703 0.86286 0.77604 0.81464 0.81443 1.21427 1.21859 1.20403 1.21139 0.92661 0.85417 0.98912 0.91717 0.91910 0.91866 0.81526 0.86113 0.87809 0.76473 0.76969 0.76728 0.93086 0.92326 0.92813 0.92449 0.96404 0.89306 0.93742 0.96739 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.35 36.01 0.37 -0.52 16 2 C -0.13 -1.69 6.36 -102.54 -0.65 -2.35 16 3 C -0.01 -0.11 11.82 -16.82 -0.20 -0.31 16 4 N -0.55 -5.07 5.90 -9.11 -0.05 -5.13 16 5 H 0.41 2.36 8.96 -40.82 -0.37 2.00 16 6 C 0.08 1.02 5.67 -81.88 -0.46 0.56 16 7 C -0.08 -0.83 6.01 -29.04 -0.17 -1.01 16 8 C 0.52 5.98 8.09 -10.99 -0.09 5.89 16 9 N -0.85 -7.16 8.87 31.22 0.28 -6.88 16 10 O -0.53 -8.06 16.87 5.56 0.09 -7.97 16 11 C -0.19 -2.87 6.05 -103.35 -0.62 -3.50 16 12 C 0.59 10.60 7.26 -12.59 -0.09 10.50 16 13 O -0.54 -11.83 16.77 5.26 0.09 -11.74 16 14 N -0.71 -12.26 5.08 -54.82 -0.28 -12.54 16 15 C 0.13 2.46 2.60 -67.81 -0.18 2.28 16 16 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 17 C -0.11 -2.04 5.36 -26.69 -0.14 -2.19 16 18 C -0.14 -2.75 6.08 -26.61 -0.16 -2.91 16 19 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 20 N -0.59 -15.33 2.99 -172.32 -0.52 -15.85 16 21 C -0.25 -7.06 9.59 -15.06 -0.14 -7.21 16 22 H 0.07 1.89 7.89 -52.49 -0.41 1.48 16 23 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 24 N -0.90 -26.54 11.19 55.49 0.62 -25.91 16 25 Si 0.90 22.24 29.59 -169.99 -5.03 17.21 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C 0.15 3.34 6.09 -3.71 -0.02 3.31 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 3.28 8.93 -40.82 -0.36 2.92 16 37 H 0.40 2.24 8.83 -40.82 -0.36 1.88 16 38 H 0.40 6.41 8.59 -40.82 -0.35 6.06 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.16 8.14 -51.94 -0.42 0.74 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.32 7.94 -51.92 -0.41 0.91 16 LS Contribution 390.71 15.07 5.89 5.89 Total: -1.00 -37.08 390.71 -8.76 -45.85 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.18 Total: 10.47 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.68 Total: 6.61 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 0.05 Total: -66.31 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.18 Total: -19.71 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.08 -8.76 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008604497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.494 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds