Wall clock time and date at job start Tue Mar 31 2020 19:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33228 * 126.01752 * 2 1 4 4 C 1.31533 * 109.76053 * 179.85827 * 3 2 1 5 5 O 1.35204 * 125.49385 * 180.18234 * 4 3 2 6 6 N 1.34950 * 109.01416 * 0.41389 * 4 3 2 7 7 H 0.97001 * 126.54166 * 179.71522 * 6 4 3 8 8 C 1.36719 * 126.01800 * 180.31262 * 2 1 3 9 9 C 1.46380 * 126.82859 * 359.96136 * 8 2 1 10 10 O 1.21736 * 119.99366 * 330.54026 * 9 8 2 11 11 N 1.34770 * 120.00386 * 150.54247 * 9 8 2 12 12 C 1.47070 * 120.84457 * 4.17871 * 11 9 8 13 13 C 1.52668 * 109.29829 * 233.36543 * 12 11 9 14 14 C 1.53139 * 109.69232 * 306.24586 * 13 12 11 15 15 C 1.52824 * 109.26255 * 60.71138 * 14 13 12 16 16 H 1.08997 * 109.46878 * 57.99244 * 15 14 13 17 17 C 1.53060 * 110.34267 * 178.53452 * 15 14 13 18 18 N 1.47068 * 108.33660 * 175.44690 * 17 15 14 19 19 C 1.36935 * 120.47294 * 126.65163 * 18 17 15 20 20 H 1.08006 * 119.99931 * 214.18202 * 19 18 17 21 21 C 1.38808 * 120.00328 * 34.18678 * 19 18 17 22 22 N 1.31616 * 119.99652 * 18.42467 * 21 19 18 23 23 Si 1.86804 * 120.00045 * 198.43031 * 21 19 18 24 24 H 1.48498 * 109.47244 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46887 * 119.99859 * 23 21 19 26 26 H 1.48500 * 109.46926 * 239.99500 * 23 21 19 27 27 C 1.46861 * 119.05243 * 306.67676 * 18 17 15 28 28 C 1.53312 * 109.10547 * 52.65449 * 27 18 17 29 29 C 1.46713 * 120.84567 * 184.44876 * 11 9 8 30 30 H 1.09008 * 109.53528 * 245.43351 * 29 11 9 31 31 H 1.08997 * 109.47163 * 269.68748 * 1 2 3 32 32 H 1.09001 * 109.47487 * 149.68721 * 1 2 3 33 33 H 1.09000 * 109.47375 * 29.68685 * 1 2 3 34 34 H 0.96694 * 114.00277 * 270.26326 * 5 4 3 35 35 H 1.08999 * 109.53588 * 353.28399 * 12 11 9 36 36 H 1.08994 * 109.54575 * 113.54928 * 12 11 9 37 37 H 1.08998 * 109.51958 * 186.10786 * 13 12 11 38 38 H 1.09004 * 109.27024 * 66.23191 * 13 12 11 39 39 H 1.09004 * 109.50809 * 300.77926 * 14 13 12 40 40 H 1.08995 * 109.54081 * 180.66620 * 14 13 12 41 41 H 1.08998 * 109.69563 * 55.73714 * 17 15 14 42 42 H 1.09004 * 109.72528 * 295.17309 * 17 15 14 43 43 H 0.97006 * 119.99794 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.53484 * 292.76457 * 27 18 17 45 45 H 1.09005 * 109.53739 * 172.54012 * 27 18 17 46 46 H 1.09002 * 109.56256 * 186.05326 * 28 27 18 47 47 H 1.09003 * 109.64657 * 65.78505 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5532 0.7094 0.0031 5 8 4.6149 1.5464 0.0075 6 7 3.6181 -0.6385 -0.0041 7 1 4.4243 -1.1779 -0.0077 8 6 2.3110 -1.1058 -0.0060 9 6 1.8792 -2.5045 -0.0129 10 8 0.8229 -2.8178 0.5047 11 7 2.6512 -3.4452 -0.5920 12 6 3.9718 -3.1034 -1.1417 13 6 4.0515 -3.5732 -2.5921 14 6 3.6967 -5.0607 -2.6730 15 6 2.2707 -5.2673 -2.1639 16 1 1.5824 -4.6650 -2.7568 17 6 1.8771 -6.7428 -2.2679 18 7 0.5449 -6.9097 -1.6676 19 6 -0.4637 -7.5114 -2.3719 20 1 -1.4843 -7.1832 -2.2407 21 6 -0.1745 -8.5432 -3.2542 22 7 0.9696 -9.1871 -3.1614 23 14 -1.4091 -9.0176 -4.5734 24 1 -2.6075 -8.1474 -4.4658 25 1 -0.7917 -8.8473 -5.9133 26 1 -1.8095 -10.4357 -4.3896 27 6 0.3116 -6.4214 -0.3024 28 6 0.7471 -4.9542 -0.2130 29 6 2.1930 -4.8351 -0.6954 30 1 2.8333 -5.4760 -0.0891 31 1 -0.3633 -0.0056 1.0276 32 1 -0.3634 -0.8872 -0.5187 33 1 -0.3634 0.8928 -0.5090 34 1 4.9239 1.7945 -0.8746 35 1 4.1150 -2.0236 -1.1014 36 1 4.7486 -3.5977 -0.5584 37 1 5.0626 -3.4202 -2.9694 38 1 3.3483 -2.9990 -3.1954 39 1 4.3896 -5.6342 -2.0572 40 1 3.7659 -5.3963 -3.7077 41 1 2.6013 -7.3550 -1.7305 42 1 1.8480 -7.0428 -3.3155 43 1 1.1716 -9.9084 -3.7778 44 1 0.8919 -7.0174 0.4020 45 1 -0.7487 -6.5020 -0.0626 46 1 0.6783 -4.6154 0.8208 47 1 0.1012 -4.3412 -0.8416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021609886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:15 Heat of formation + Delta-G solvation = 36.920222 kcal Electronic energy + Delta-G solvation = -30544.309430 eV Core-core repulsion = 26537.175339 eV Total energy + Delta-G solvation = -4007.134091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64067 -40.34261 -38.02196 -37.49001 -36.05877 -33.85536 -32.89015 -32.55828 -30.98701 -30.22910 -29.34094 -27.30482 -25.71022 -24.91837 -22.97729 -22.78599 -22.53716 -21.26057 -20.20078 -19.97838 -19.42542 -18.76002 -17.32332 -16.74337 -16.69452 -16.18567 -15.52741 -15.33846 -14.85174 -14.53846 -14.36820 -14.03169 -13.97038 -13.51827 -13.35256 -13.17023 -12.94097 -12.76168 -12.64955 -12.55499 -12.34454 -12.23780 -12.08968 -11.57942 -11.17327 -11.08398 -10.91317 -10.87715 -10.73411 -10.42883 -10.30998 -10.22267 -10.11628 -10.08955 -9.83150 -9.51464 -9.02266 -8.65971 -8.44386 -8.34984 -6.57630 -5.80600 -3.26889 1.00558 2.12452 2.39389 2.84311 3.19757 3.35913 3.44551 3.47911 3.55657 4.28331 4.48334 4.52449 4.64774 4.80631 4.90394 4.95306 5.16923 5.29852 5.35110 5.35941 5.44307 5.54458 5.62606 5.71591 5.78085 5.80303 5.82057 5.84506 6.00880 6.13407 6.19486 6.24797 6.32469 6.34974 6.37395 6.48418 6.56533 6.75551 6.91837 6.97678 7.13332 7.19208 7.23238 7.40782 7.50144 7.56939 7.83741 8.17650 8.48781 9.20869 9.83296 10.43822 11.27156 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003267 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.883714 B = 8568.125721 C = 9192.382333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.103 3.897 3 N -0.486 5.486 4 C 0.398 3.602 5 O -0.442 6.442 6 N -0.558 5.558 7 H 0.425 0.575 8 C -0.071 4.071 9 C 0.592 3.408 10 O -0.505 6.505 11 N -0.602 5.602 12 C 0.090 3.910 13 C -0.131 4.131 14 C -0.113 4.113 15 C -0.121 4.121 16 H 0.068 0.932 17 C 0.187 3.813 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.898 5.898 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.140 3.860 28 C -0.123 4.123 29 C 0.159 3.841 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 17.371 3.198 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.030 4.030 3 N -0.217 5.217 4 C 0.097 3.903 5 O -0.243 6.243 6 N -0.183 5.183 7 H 0.271 0.729 8 C -0.185 4.185 9 C 0.378 3.622 10 O -0.380 6.380 11 N -0.334 5.334 12 C -0.033 4.033 13 C -0.170 4.170 14 C -0.151 4.151 15 C -0.142 4.142 16 H 0.087 0.913 17 C 0.060 3.940 18 N -0.314 5.314 19 C -0.386 4.386 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.541 5.541 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.013 3.987 28 C -0.162 4.162 29 C 0.058 3.942 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.263 0.737 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.865 17.872 4.006 20.803 hybrid contribution 0.784 -1.191 -1.375 1.981 sum 10.649 16.681 2.631 19.964 Atomic orbital electron populations 1.20230 0.85927 1.03379 1.03511 1.20881 0.96830 0.85821 0.99515 1.70244 0.98634 1.30453 1.22397 1.20237 0.87405 0.78967 1.03700 1.84835 1.43364 1.61692 1.34441 1.44568 1.08987 1.07768 1.56957 0.72938 1.21133 0.82688 0.95798 1.18925 1.16813 0.84334 0.81995 0.79012 1.90921 1.22905 1.79103 1.45097 1.48256 1.17576 1.10063 1.57528 1.22054 0.85235 1.00010 0.96048 1.21812 1.01765 0.98327 0.95074 1.21498 0.97475 0.94130 1.01972 1.22279 0.95338 1.02199 0.94359 0.91310 1.20632 0.86250 0.87670 0.99404 1.44042 1.09138 1.67921 1.10254 1.19163 0.88886 1.11086 1.19475 0.91954 1.25161 0.97165 0.95374 1.01355 1.70065 1.24271 1.22457 1.37321 0.86311 0.81097 0.77973 0.81938 1.20087 1.21565 1.21681 1.21129 0.98824 0.91315 0.87400 1.22568 0.92955 0.98384 1.02290 1.21391 0.97306 0.78269 0.97218 0.91401 0.90122 0.89850 0.90850 0.73705 0.90646 0.90999 0.91036 0.91559 0.91952 0.91352 0.96058 0.90573 0.93748 0.96777 0.92458 0.89783 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.76 36.01 0.35 -0.51 16 2 C 0.10 1.37 7.13 -82.54 -0.59 0.78 16 3 N -0.49 -6.35 11.22 -10.83 -0.12 -6.47 16 4 C 0.40 4.14 9.43 -89.59 -0.84 3.29 16 5 O -0.44 -3.26 13.62 -17.31 -0.24 -3.49 16 6 N -0.56 -5.34 4.94 -10.90 -0.05 -5.39 16 7 H 0.43 2.89 6.40 -40.82 -0.26 2.63 16 8 C -0.07 -0.91 6.45 -81.97 -0.53 -1.43 16 9 C 0.59 8.75 7.36 -12.99 -0.10 8.66 16 10 O -0.51 -8.78 11.40 5.16 0.06 -8.73 16 11 N -0.60 -8.27 2.98 -167.23 -0.50 -8.76 16 12 C 0.09 0.89 5.77 -3.90 -0.02 0.87 16 13 C -0.13 -1.37 6.05 -26.83 -0.16 -1.53 16 14 C -0.11 -1.54 5.24 -26.75 -0.14 -1.68 16 15 C -0.12 -2.12 2.21 -90.54 -0.20 -2.32 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.19 4.22 4.62 -3.70 -0.02 4.20 16 18 N -0.59 -14.68 2.96 -172.26 -0.51 -15.19 16 19 C -0.26 -7.03 9.48 -15.06 -0.14 -7.17 16 20 H 0.06 1.72 7.90 -52.48 -0.41 1.30 16 21 C 0.01 0.25 4.82 -17.43 -0.08 0.16 16 22 N -0.90 -25.69 11.77 55.49 0.65 -25.04 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.14 3.03 6.50 -3.68 -0.02 3.01 16 28 C -0.12 -2.31 3.82 -26.63 -0.10 -2.41 16 29 C 0.16 2.65 2.64 -67.73 -0.18 2.47 16 30 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 0.77 9.06 45.56 0.41 1.19 16 35 H 0.08 0.60 3.54 -51.93 -0.18 0.41 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 1.92 6.60 -51.93 -0.34 1.58 16 43 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 46 H 0.08 1.58 6.13 -51.93 -0.32 1.26 16 47 H 0.06 1.34 7.43 -51.93 -0.39 0.95 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -33.38 361.27 -9.14 -42.52 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.07 Total: 2.25 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.78 Total: 6.36 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.53 Total: -60.86 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.18 Total: -12.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.38 -9.14 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021609886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.443 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds