Wall clock time and date at job start Tue Mar 31 2020 18:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34485 * 126.83043 * 2 1 4 4 N 1.36457 * 108.84995 * 180.25691 * 3 2 1 5 5 H 0.96996 * 124.84565 * 179.72955 * 4 3 2 6 6 C 1.34656 * 110.29788 * 359.74703 * 4 3 2 7 7 C 1.50700 * 125.79590 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47248 * 265.02579 * 7 6 4 9 9 N 1.34780 * 119.99700 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00187 * 0.02562 * 8 7 6 11 11 C 1.36762 * 108.40016 * 0.02562 * 6 4 3 12 12 C 1.47258 * 126.94275 * 179.97438 * 11 6 4 13 13 O 1.21626 * 120.00168 * 89.99744 * 12 11 6 14 14 N 1.34781 * 120.00136 * 269.99335 * 12 11 6 15 15 C 1.46500 * 120.00280 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47087 * 173.59540 * 15 14 12 17 17 H 1.08998 * 109.99603 * 56.58344 * 16 15 14 18 18 C 1.54320 * 109.87997 * 177.68519 * 16 15 14 19 19 C 1.55159 * 102.94146 * 141.60962 * 18 16 15 20 20 C 1.54906 * 101.57974 * 324.49428 * 19 18 16 21 21 N 1.47022 * 109.87793 * 295.49221 * 16 15 14 22 22 C 1.36935 * 125.64894 * 61.69239 * 21 16 15 23 23 H 1.07991 * 120.00043 * 323.02785 * 22 21 16 24 24 C 1.38821 * 119.99925 * 143.03377 * 22 21 16 25 25 N 1.31620 * 119.99949 * 161.86818 * 24 22 21 26 26 Si 1.86797 * 119.99787 * 341.86733 * 24 22 21 27 27 H 1.48504 * 109.47005 * 91.70213 * 26 24 22 28 28 H 1.48495 * 109.47127 * 211.69974 * 26 24 22 29 29 H 1.48494 * 109.47471 * 331.70352 * 26 24 22 30 30 H 1.09009 * 109.46869 * 270.14452 * 1 2 3 31 31 H 1.08993 * 109.47530 * 30.14310 * 1 2 3 32 32 H 1.09001 * 109.46912 * 150.15283 * 1 2 3 33 33 H 1.08000 * 125.57509 * 359.96479 * 3 2 1 34 34 H 1.08999 * 109.47622 * 25.03041 * 7 6 4 35 35 H 1.09003 * 109.46808 * 145.02378 * 7 6 4 36 36 H 0.96996 * 120.00333 * 359.97438 * 9 8 7 37 37 H 0.97005 * 119.99349 * 180.02562 * 9 8 7 38 38 H 0.97005 * 119.99484 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.46632 * 53.59496 * 15 14 12 40 40 H 1.09005 * 109.47011 * 293.59392 * 15 14 12 41 41 H 1.08996 * 110.72411 * 23.24266 * 18 16 15 42 42 H 1.09005 * 110.71807 * 259.97221 * 18 16 15 43 43 H 1.09006 * 111.00181 * 82.56973 * 19 18 16 44 44 H 1.08994 * 111.00369 * 206.42011 * 19 18 16 45 45 H 1.09005 * 110.36345 * 155.84904 * 20 19 18 46 46 H 1.08993 * 110.36749 * 278.06241 * 20 19 18 47 47 H 0.96992 * 119.99879 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6903 -0.0040 7 6 4.9226 -1.5215 -0.0095 8 6 5.2660 -1.9036 -1.4263 9 7 6.3579 -2.6532 -1.6762 10 8 4.5599 -1.5366 -2.3415 11 6 2.3864 -1.1741 0.0025 12 6 1.9750 -2.5880 0.0059 13 8 1.8100 -3.1708 1.0606 14 7 1.7811 -3.2363 -1.1597 15 6 1.3723 -4.6431 -1.1564 16 6 1.0684 -5.0893 -2.5880 17 1 1.9370 -4.9188 -3.2239 18 6 0.6927 -6.5861 -2.6026 19 6 -0.4414 -6.6494 -3.6595 20 6 -1.1647 -5.3006 -3.4207 21 7 -0.0869 -4.3442 -3.1092 22 6 -0.1507 -2.9868 -3.2784 23 1 0.3218 -2.3307 -2.5626 24 6 -0.8229 -2.4543 -4.3701 25 7 -1.1969 -1.1924 -4.3611 26 14 -1.1965 -3.5287 -5.8518 27 1 -2.5365 -4.1476 -5.6891 28 1 -1.1812 -2.6976 -7.0823 29 1 -0.1689 -4.5950 -5.9618 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8886 -0.5160 32 1 -0.3633 -0.8914 -0.5115 33 1 1.9868 2.1059 -0.0005 34 1 5.7416 -0.9447 0.4199 35 1 4.7643 -2.4234 0.5818 36 1 6.9228 -2.9464 -0.9443 37 1 6.5791 -2.8987 -2.5882 38 1 1.9130 -2.7715 -2.0009 39 1 0.4798 -4.7606 -0.5419 40 1 2.1774 -5.2544 -0.7484 41 1 0.3272 -6.9015 -1.6254 42 1 1.5429 -7.1940 -2.9121 43 1 -0.0325 -6.7002 -4.6687 44 1 -1.1082 -7.4898 -3.4672 45 1 -1.6979 -4.9917 -4.3198 46 1 -1.8547 -5.3837 -2.5811 47 1 -1.6662 -0.8202 -5.1239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028151312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:50 Heat of formation + Delta-G solvation = -4.116541 kcal Electronic energy + Delta-G solvation = -30492.837806 eV Core-core repulsion = 26483.924227 eV Total energy + Delta-G solvation = -4008.913579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.06845 -39.11300 -38.72193 -37.55495 -33.73096 -33.67469 -32.55287 -32.45254 -31.44833 -29.86713 -29.33148 -27.83699 -25.61737 -24.90197 -23.77007 -21.86514 -20.99893 -20.58258 -19.62192 -19.10445 -18.64509 -17.84832 -16.96704 -16.82220 -16.55645 -16.09792 -15.59829 -15.24443 -14.92558 -14.51793 -14.23942 -14.15218 -13.52807 -13.40289 -13.17045 -13.05586 -12.77761 -12.67986 -12.39972 -12.35641 -12.13397 -12.08640 -11.82724 -11.63924 -11.24794 -11.19990 -10.85493 -10.74158 -10.62597 -10.39067 -10.11704 -9.99284 -9.73782 -9.73082 -9.49019 -9.24448 -8.45842 -8.14517 -8.11334 -7.78648 -6.70698 -5.89831 -3.34438 2.31398 2.63502 3.01285 3.30039 3.37013 3.40454 3.50996 3.56710 3.61342 4.23132 4.59458 4.60561 4.89573 4.99943 5.03364 5.23070 5.33271 5.39022 5.42217 5.55369 5.57530 5.67157 5.87820 5.92609 6.03643 6.04559 6.17058 6.19964 6.28641 6.34531 6.37407 6.42909 6.47998 6.64269 6.68540 6.70856 6.77892 6.92603 6.97299 7.19264 7.24897 7.29849 7.32742 7.77416 8.00207 8.24290 8.40783 8.45469 8.93011 9.04179 9.74880 10.33098 11.24457 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.004733 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.535018 B = 5914.754842 C = 6609.515665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.114 4.114 3 C -0.016 4.016 4 N -0.548 5.548 5 H 0.409 0.591 6 C 0.070 3.930 7 C -0.076 4.076 8 C 0.510 3.490 9 N -0.860 5.860 10 O -0.510 6.510 11 C -0.185 4.185 12 C 0.588 3.412 13 O -0.566 6.566 14 N -0.695 5.695 15 C 0.116 3.884 16 C 0.143 3.857 17 H 0.046 0.954 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.116 3.884 21 N -0.599 5.599 22 C -0.253 4.253 23 H 0.095 0.905 24 C 0.037 3.963 25 N -0.897 5.897 26 Si 0.885 3.115 27 H -0.288 1.288 28 H -0.305 1.305 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.398 0.602 37 H 0.402 0.598 38 H 0.417 0.583 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.043 0.957 46 H 0.030 0.970 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 -1.503 8.158 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C -0.143 4.143 4 N -0.143 5.143 5 H 0.245 0.755 6 C -0.046 4.046 7 C -0.117 4.117 8 C 0.293 3.707 9 N -0.425 5.425 10 O -0.383 6.383 11 C -0.196 4.196 12 C 0.374 3.626 13 O -0.446 6.446 14 N -0.347 5.347 15 C -0.010 4.010 16 C 0.036 3.964 17 H 0.064 0.936 18 C -0.159 4.159 19 C -0.175 4.175 20 C -0.008 4.008 21 N -0.325 5.325 22 C -0.380 4.380 23 H 0.112 0.888 24 C -0.164 4.164 25 N -0.539 5.539 26 Si 0.717 3.283 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.196 1.196 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.226 0.774 37 H 0.233 0.767 38 H 0.257 0.743 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.028 -1.238 8.287 16.340 hybrid contribution 0.493 -0.217 -1.411 1.510 sum 14.521 -1.454 6.877 16.133 Atomic orbital electron populations 1.20156 0.89203 1.03688 1.00902 1.20482 0.95459 0.90177 1.05920 1.21398 0.82033 0.98961 1.11950 1.41120 1.08035 1.05487 1.59638 0.75501 1.18969 0.93680 0.83277 1.08629 1.20168 0.95071 1.01080 0.95398 1.20531 0.80560 0.78227 0.91363 1.43832 1.29049 1.56864 1.12730 1.90886 1.48763 1.52528 1.46149 1.20036 0.92223 0.93062 1.14264 1.17469 0.76504 0.84949 0.83713 1.90702 1.53421 1.68768 1.31721 1.46265 1.66703 1.12475 1.09231 1.21894 0.98681 0.81440 0.98980 1.21278 0.92337 0.90541 0.92271 0.93648 1.22485 0.98372 0.95783 0.99278 1.22780 0.97698 0.98086 0.98899 1.21904 0.92060 0.88664 0.98185 1.44677 1.08393 1.02959 1.76513 1.18739 1.34961 0.78701 1.05634 0.88758 1.25460 0.98634 0.95104 0.97207 1.69814 1.39792 1.13452 1.30798 0.86798 0.77893 0.80174 0.83452 1.21591 1.23350 1.19595 0.92477 0.91690 0.90618 0.81594 0.88101 0.86675 0.77383 0.76714 0.74324 0.91741 0.93374 0.91291 0.91611 0.91742 0.91640 0.93971 0.95165 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.35 36.01 0.37 -1.16 16 2 C -0.11 -2.10 6.36 -102.54 -0.65 -2.75 16 3 C -0.02 -0.23 11.82 -16.82 -0.20 -0.43 16 4 N -0.55 -7.07 5.90 -9.11 -0.05 -7.12 16 5 H 0.41 3.64 8.96 -40.82 -0.37 3.27 16 6 C 0.07 1.06 5.67 -81.89 -0.46 0.60 16 7 C -0.08 -0.85 6.01 -29.04 -0.17 -1.02 16 8 C 0.51 6.50 8.09 -10.98 -0.09 6.41 16 9 N -0.86 -6.96 8.87 31.22 0.28 -6.68 16 10 O -0.51 -9.32 16.87 5.56 0.09 -9.23 16 11 C -0.19 -3.54 6.05 -103.36 -0.62 -4.16 16 12 C 0.59 12.41 7.30 -12.59 -0.09 12.32 16 13 O -0.57 -13.09 17.09 5.25 0.09 -13.00 16 14 N -0.69 -14.63 4.33 -61.43 -0.27 -14.89 16 15 C 0.12 2.28 5.15 -4.04 -0.02 2.26 16 16 C 0.14 2.84 3.30 -66.95 -0.22 2.62 16 17 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.12 -1.95 6.48 -24.90 -0.16 -2.11 16 19 C -0.14 -2.37 7.09 -24.58 -0.17 -2.55 16 20 C 0.12 2.54 6.27 -2.53 -0.02 2.53 16 21 N -0.60 -14.32 2.65 -162.57 -0.43 -14.75 16 22 C -0.25 -7.01 9.47 -15.06 -0.14 -7.15 16 23 H 0.10 2.77 5.59 -52.49 -0.29 2.47 16 24 C 0.04 1.07 5.45 -17.43 -0.09 0.97 16 25 N -0.90 -27.37 13.97 55.49 0.78 -26.59 16 26 Si 0.89 22.85 24.98 -169.99 -4.25 18.60 16 27 H -0.29 -7.28 6.68 56.52 0.38 -6.91 16 28 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 29 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.12 1.26 8.05 -51.93 -0.42 0.84 16 36 H 0.40 1.79 8.83 -40.82 -0.36 1.43 16 37 H 0.40 3.12 8.93 -40.82 -0.36 2.76 16 38 H 0.42 9.63 6.37 -40.82 -0.26 9.37 16 39 H 0.06 1.37 8.12 -51.93 -0.42 0.95 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.04 1.00 3.28 -51.93 -0.17 0.83 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -37.87 384.17 -7.60 -45.46 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -6.87 Total: 16.03 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.75 Total: 6.39 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: 0.30 Total: -70.04 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.18 Total: -22.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.25 Total: 18.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.87 -7.60 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028151312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.346 kcal (2) G-P(sol) polarization free energy of solvation -37.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds