Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34485 * 126.83043 * 2 1 4 4 N 1.36457 * 108.84995 * 180.25691 * 3 2 1 5 5 H 0.96996 * 124.84565 * 179.72955 * 4 3 2 6 6 C 1.34656 * 110.29788 * 359.74703 * 4 3 2 7 7 C 1.50700 * 125.79590 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47248 * 265.02579 * 7 6 4 9 9 N 1.34780 * 119.99700 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00187 * 0.02562 * 8 7 6 11 11 C 1.36762 * 108.40016 * 0.02562 * 6 4 3 12 12 C 1.47258 * 126.94275 * 179.97438 * 11 6 4 13 13 O 1.21626 * 120.00168 * 89.99744 * 12 11 6 14 14 N 1.34781 * 120.00136 * 269.99335 * 12 11 6 15 15 C 1.46500 * 120.00280 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47087 * 173.59540 * 15 14 12 17 17 H 1.08998 * 109.99603 * 56.58344 * 16 15 14 18 18 C 1.54320 * 109.87997 * 177.68519 * 16 15 14 19 19 C 1.55159 * 102.94146 * 141.60962 * 18 16 15 20 20 C 1.54906 * 101.57974 * 324.49428 * 19 18 16 21 21 N 1.47022 * 109.87793 * 295.49221 * 16 15 14 22 22 C 1.36935 * 125.64894 * 61.69239 * 21 16 15 23 23 H 1.07991 * 120.00043 * 323.02785 * 22 21 16 24 24 C 1.38821 * 119.99925 * 143.03377 * 22 21 16 25 25 N 1.31620 * 119.99949 * 161.86818 * 24 22 21 26 26 Si 1.86797 * 119.99787 * 341.86733 * 24 22 21 27 27 H 1.48504 * 109.47005 * 91.70213 * 26 24 22 28 28 H 1.48495 * 109.47127 * 211.69974 * 26 24 22 29 29 H 1.48494 * 109.47471 * 331.70352 * 26 24 22 30 30 H 1.09009 * 109.46869 * 270.14452 * 1 2 3 31 31 H 1.08993 * 109.47530 * 30.14310 * 1 2 3 32 32 H 1.09001 * 109.46912 * 150.15283 * 1 2 3 33 33 H 1.08000 * 125.57509 * 359.96479 * 3 2 1 34 34 H 1.08999 * 109.47622 * 25.03041 * 7 6 4 35 35 H 1.09003 * 109.46808 * 145.02378 * 7 6 4 36 36 H 0.96996 * 120.00333 * 359.97438 * 9 8 7 37 37 H 0.97005 * 119.99349 * 180.02562 * 9 8 7 38 38 H 0.97005 * 119.99484 * 0.02562 * 14 12 11 39 39 H 1.09000 * 109.46632 * 53.59496 * 15 14 12 40 40 H 1.09005 * 109.47011 * 293.59392 * 15 14 12 41 41 H 1.08996 * 110.72411 * 23.24266 * 18 16 15 42 42 H 1.09005 * 110.71807 * 259.97221 * 18 16 15 43 43 H 1.09006 * 111.00181 * 82.56973 * 19 18 16 44 44 H 1.08994 * 111.00369 * 206.42011 * 19 18 16 45 45 H 1.09005 * 110.36345 * 155.84904 * 20 19 18 46 46 H 1.08993 * 110.36749 * 278.06241 * 20 19 18 47 47 H 0.96992 * 119.99879 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6552 -0.0058 5 1 4.3840 1.2413 -0.0107 6 6 3.6656 -0.6903 -0.0040 7 6 4.9226 -1.5215 -0.0095 8 6 5.2660 -1.9036 -1.4263 9 7 6.3579 -2.6532 -1.6762 10 8 4.5599 -1.5366 -2.3415 11 6 2.3864 -1.1741 0.0025 12 6 1.9750 -2.5880 0.0059 13 8 1.8100 -3.1708 1.0606 14 7 1.7811 -3.2363 -1.1597 15 6 1.3723 -4.6431 -1.1564 16 6 1.0684 -5.0893 -2.5880 17 1 1.9370 -4.9188 -3.2239 18 6 0.6927 -6.5861 -2.6026 19 6 -0.4414 -6.6494 -3.6595 20 6 -1.1647 -5.3006 -3.4207 21 7 -0.0869 -4.3442 -3.1092 22 6 -0.1507 -2.9868 -3.2784 23 1 0.3218 -2.3307 -2.5626 24 6 -0.8229 -2.4543 -4.3701 25 7 -1.1969 -1.1924 -4.3611 26 14 -1.1965 -3.5287 -5.8518 27 1 -2.5365 -4.1476 -5.6891 28 1 -1.1812 -2.6976 -7.0823 29 1 -0.1689 -4.5950 -5.9618 30 1 -0.3633 0.0026 1.0278 31 1 -0.3634 0.8886 -0.5160 32 1 -0.3633 -0.8914 -0.5115 33 1 1.9868 2.1059 -0.0005 34 1 5.7416 -0.9447 0.4199 35 1 4.7643 -2.4234 0.5818 36 1 6.9228 -2.9464 -0.9443 37 1 6.5791 -2.8987 -2.5882 38 1 1.9130 -2.7715 -2.0009 39 1 0.4798 -4.7606 -0.5419 40 1 2.1774 -5.2544 -0.7484 41 1 0.3272 -6.9015 -1.6254 42 1 1.5429 -7.1940 -2.9121 43 1 -0.0325 -6.7002 -4.6687 44 1 -1.1082 -7.4898 -3.4672 45 1 -1.6979 -4.9917 -4.3198 46 1 -1.8547 -5.3837 -2.5811 47 1 -1.6662 -0.8202 -5.1239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028151312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = -35.529300 kcal Electronic energy + Delta-G solvation = -30494.199965 eV Core-core repulsion = 26483.924227 eV Total energy + Delta-G solvation = -4010.275738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27569 -40.37054 -40.13360 -39.20905 -35.35458 -34.65745 -34.59275 -33.70980 -32.61495 -31.74734 -30.86621 -29.15780 -26.92967 -26.54415 -25.59363 -23.35925 -22.21346 -21.88127 -21.33228 -20.33568 -20.21367 -18.94171 -18.63821 -17.91432 -17.88386 -17.54488 -17.12095 -16.82512 -16.27454 -16.10862 -15.76513 -15.30234 -15.22777 -14.82540 -14.59102 -14.54230 -14.33538 -14.11726 -14.03186 -13.76180 -13.58998 -13.52036 -13.34691 -13.04174 -13.01979 -12.93018 -12.61289 -12.29044 -12.15098 -12.07138 -11.70833 -11.53804 -11.39287 -11.07893 -10.89887 -10.61301 -10.59622 -9.85217 -9.41920 -9.00397 -8.69051 -8.11555 -5.52948 1.13071 1.29049 1.38484 1.50111 1.66914 1.67705 1.71217 2.31582 2.44626 2.63550 2.84689 3.10121 3.37786 3.58299 3.91812 3.99543 4.01820 4.10598 4.19859 4.22145 4.28709 4.35207 4.43636 4.47600 4.58791 4.64002 4.70629 4.75270 4.83856 4.87962 4.99050 5.01081 5.05235 5.14378 5.17856 5.31014 5.33640 5.47814 5.64178 5.87273 5.94457 5.94847 6.05698 6.28741 6.50117 6.70308 6.78607 6.88533 7.36283 7.42282 7.59728 8.25240 9.06242 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.004733 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.535018 B = 5914.754842 C = 6609.515665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.165 4.165 3 C 0.005 3.995 4 N -0.528 5.528 5 H 0.433 0.567 6 C 0.085 3.915 7 C -0.075 4.075 8 C 0.509 3.491 9 N -0.835 5.835 10 O -0.575 6.575 11 C -0.239 4.239 12 C 0.590 3.410 13 O -0.595 6.595 14 N -0.697 5.697 15 C 0.119 3.881 16 C 0.139 3.861 17 H 0.040 0.960 18 C -0.108 4.108 19 C -0.125 4.125 20 C 0.103 3.897 21 N -0.616 5.616 22 C -0.237 4.237 23 H 0.067 0.933 24 C -0.024 4.024 25 N -0.944 5.944 26 Si 0.947 3.053 27 H -0.281 1.281 28 H -0.315 1.315 29 H -0.258 1.258 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.203 0.797 34 H 0.154 0.846 35 H 0.120 0.880 36 H 0.419 0.581 37 H 0.407 0.593 38 H 0.406 0.594 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.028 0.972 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.529 -3.143 8.626 19.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.172 4.172 3 C -0.125 4.125 4 N -0.124 5.124 5 H 0.273 0.727 6 C -0.032 4.032 7 C -0.115 4.115 8 C 0.293 3.707 9 N -0.400 5.400 10 O -0.454 6.454 11 C -0.249 4.249 12 C 0.377 3.623 13 O -0.478 6.478 14 N -0.347 5.347 15 C -0.006 4.006 16 C 0.033 3.967 17 H 0.058 0.942 18 C -0.146 4.146 19 C -0.163 4.163 20 C -0.021 4.021 21 N -0.342 5.342 22 C -0.366 4.366 23 H 0.084 0.916 24 C -0.220 4.220 25 N -0.589 5.589 26 Si 0.778 3.222 27 H -0.209 1.209 28 H -0.244 1.244 29 H -0.183 1.183 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.220 0.780 34 H 0.172 0.828 35 H 0.138 0.862 36 H 0.251 0.749 37 H 0.238 0.762 38 H 0.244 0.756 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.120 0.880 43 H 0.083 0.917 44 H 0.120 0.880 45 H 0.041 0.959 46 H 0.046 0.954 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.905 -2.944 8.793 19.281 hybrid contribution -0.292 0.302 -1.433 1.493 sum 16.612 -2.642 7.360 18.361 Atomic orbital electron populations 1.19968 0.90568 1.01358 1.00898 1.20643 0.95307 0.91744 1.09479 1.21808 0.82099 0.99516 1.09029 1.41129 1.08441 1.05149 1.57708 0.72679 1.19407 0.93856 0.84317 1.05645 1.20331 0.94889 1.01466 0.94821 1.20767 0.80715 0.78000 0.91192 1.43620 1.27651 1.54798 1.13891 1.90878 1.51122 1.55425 1.47942 1.20114 0.94445 0.92083 1.18293 1.17823 0.75577 0.85863 0.83060 1.90651 1.54944 1.69799 1.32410 1.46351 1.66540 1.13001 1.08771 1.21912 0.98614 0.81359 0.98730 1.21487 0.90708 0.92975 0.91521 0.94200 1.22514 0.99308 0.92823 0.99984 1.22752 0.98049 0.96190 0.99280 1.22085 0.92015 0.90798 0.97171 1.44818 1.10749 1.02163 1.76509 1.18702 1.32785 0.80688 1.04424 0.91562 1.26067 0.99728 0.96265 0.99923 1.69957 1.42117 1.15403 1.31419 0.85787 0.78212 0.78543 0.79668 1.20909 1.24391 1.18273 0.91373 0.90950 0.95783 0.77993 0.82831 0.86238 0.74911 0.76210 0.75629 0.93951 0.90700 0.89702 0.88027 0.91746 0.88003 0.95861 0.95375 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.84 10.35 71.24 0.74 -2.11 16 2 C -0.17 -6.34 6.36 -18.51 -0.12 -6.45 16 3 C 0.00 0.13 11.82 83.11 0.98 1.11 16 4 N -0.53 -12.54 5.90 -182.72 -1.08 -13.62 16 5 H 0.43 6.19 8.96 -92.71 -0.83 5.36 16 6 C 0.09 2.51 5.67 41.78 0.24 2.74 16 7 C -0.07 -1.48 6.01 29.10 0.17 -1.31 16 8 C 0.51 12.16 8.09 87.66 0.71 12.87 16 9 N -0.83 -11.37 8.87 -173.53 -1.54 -12.91 16 10 O -0.58 -21.13 16.87 -3.02 -0.05 -21.19 16 11 C -0.24 -9.43 6.05 -19.04 -0.12 -9.54 16 12 C 0.59 26.02 7.30 86.61 0.63 26.66 16 13 O -0.60 -28.57 17.09 -4.11 -0.07 -28.64 16 14 N -0.70 -30.71 4.33 -466.51 -2.02 -32.73 16 15 C 0.12 4.72 5.15 86.38 0.45 5.17 16 16 C 0.14 5.44 3.30 45.34 0.15 5.58 16 17 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.11 -3.11 6.48 31.78 0.21 -2.90 16 19 C -0.12 -3.90 7.09 31.99 0.23 -3.68 16 20 C 0.10 4.43 6.27 86.85 0.54 4.97 16 21 N -0.62 -29.78 2.65 -668.26 -1.77 -31.55 16 22 C -0.24 -13.74 9.47 84.04 0.80 -12.94 16 23 H 0.07 4.19 5.59 -2.92 -0.02 4.18 16 24 C -0.02 -1.42 5.45 84.86 0.46 -0.96 16 25 N -0.94 -60.73 13.97 21.65 0.30 -60.43 16 26 Si 0.95 48.58 24.98 68.60 1.71 50.30 16 27 H -0.28 -13.95 6.68 99.48 0.66 -13.28 16 28 H -0.31 -16.45 7.11 99.48 0.71 -15.74 16 29 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.20 4.09 8.06 -2.91 -0.02 4.06 16 34 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 2.34 8.05 -2.39 -0.02 2.32 16 36 H 0.42 2.26 8.83 -92.71 -0.82 1.44 16 37 H 0.41 5.45 8.93 -92.70 -0.83 4.62 16 38 H 0.41 19.94 6.37 -92.70 -0.59 19.35 16 39 H 0.04 1.85 8.12 -2.39 -0.02 1.83 16 40 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.08 2.21 7.85 -2.39 -0.02 2.19 16 42 H 0.10 2.27 8.14 -2.38 -0.02 2.26 16 43 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.02 1.09 3.28 -2.38 -0.01 1.09 16 46 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -90.60 384.17 -0.50 -91.10 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: -2.06 Total: 40.43 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.07 Total: 19.23 kcal Atomic # 7 Polarization: -145.12 SS G_CDS: -6.11 Total: -151.23 kcal Atomic # 8 Polarization: -49.70 SS G_CDS: -0.12 Total: -49.82 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.71 Total: 50.30 kcal Total: -90.60 -0.50 -91.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028151312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.572 kcal (2) G-P(sol) polarization free energy of solvation -90.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds