Wall clock time and date at job start Tue Mar 31 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83201 * 2 1 4 4 N 1.36455 * 108.85548 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.84713 * 179.97438 * 4 3 2 6 6 C 1.34656 * 110.29848 * 359.97438 * 4 3 2 7 7 C 1.50696 * 125.80048 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47161 * 264.97237 * 7 6 4 9 9 N 1.34778 * 119.99721 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99949 * 0.02562 * 8 7 6 11 11 C 1.36767 * 108.39427 * 0.02562 * 6 4 3 12 12 C 1.47268 * 126.94025 * 180.02562 * 11 6 4 13 13 O 1.21636 * 119.99995 * 89.99647 * 12 11 6 14 14 N 1.34774 * 120.00053 * 269.99787 * 12 11 6 15 15 C 1.46498 * 120.00155 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47278 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.88537 * 54.29897 * 16 15 14 18 18 C 1.55153 * 111.00250 * 178.17874 * 16 15 14 19 19 C 1.54323 * 102.93951 * 153.57725 * 18 16 15 20 20 N 1.47024 * 107.27408 * 337.80821 * 19 18 16 21 21 C 1.36938 * 125.65160 * 178.97733 * 20 19 18 22 22 H 1.07998 * 120.00148 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99797 * 359.97430 * 21 20 19 24 24 N 1.31619 * 120.00371 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99777 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47299 * 89.99842 * 25 23 21 27 27 H 1.48506 * 109.47347 * 209.99795 * 25 23 21 28 28 H 1.48506 * 109.47118 * 329.99903 * 25 23 21 29 29 C 1.47470 * 108.72109 * 358.97458 * 20 19 18 30 30 H 1.09005 * 109.46590 * 90.03266 * 1 2 3 31 31 H 1.09000 * 109.47387 * 210.02489 * 1 2 3 32 32 H 1.08995 * 109.47241 * 330.03270 * 1 2 3 33 33 H 1.07998 * 125.57525 * 0.25162 * 3 2 1 34 34 H 1.08995 * 109.47348 * 24.97572 * 7 6 4 35 35 H 1.09002 * 109.46811 * 144.97249 * 7 6 4 36 36 H 0.96997 * 120.00463 * 0.02562 * 9 8 7 37 37 H 0.96996 * 119.99167 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99947 * 0.02562 * 14 12 11 39 39 H 1.08999 * 109.47180 * 300.00596 * 15 14 12 40 40 H 1.08999 * 109.46948 * 59.99859 * 15 14 12 41 41 H 1.08997 * 110.72271 * 271.93875 * 18 16 15 42 42 H 1.08999 * 110.72403 * 35.03933 * 18 16 15 43 43 H 1.08995 * 109.88606 * 97.22347 * 19 18 16 44 44 H 1.09006 * 109.88572 * 218.23553 * 19 18 16 45 45 H 0.96995 * 120.00277 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.34569 * 265.25875 * 29 20 19 47 47 H 1.08994 * 110.40927 * 142.91553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2414 0.0003 6 6 3.6657 -0.6902 0.0015 7 6 4.9226 -1.5215 0.0029 8 6 5.2739 -1.9034 -1.4120 9 7 6.3671 -2.6529 -1.6559 10 8 4.5728 -1.5363 -2.3310 11 6 2.3864 -1.1740 0.0010 12 6 1.9750 -2.5880 0.0022 13 8 1.8042 -3.1709 1.0561 14 7 1.7876 -3.2363 -1.1644 15 6 1.3788 -4.6431 -1.1632 16 6 1.2380 -5.1345 -2.6053 17 1 2.1529 -4.9523 -3.1691 18 6 0.8497 -6.6361 -2.6457 19 6 0.1118 -6.7661 -3.9948 20 7 -0.3651 -5.4249 -4.3626 21 6 -1.0518 -5.1071 -5.5039 22 1 -1.3599 -4.0875 -5.6826 23 6 -1.3519 -6.0955 -6.4312 24 7 -0.9761 -7.3380 -6.2138 25 14 -2.2881 -5.6618 -7.9884 26 1 -1.3259 -5.2970 -9.0591 27 1 -3.0932 -6.8312 -8.4239 28 1 -3.1894 -4.5125 -7.7203 29 6 0.0183 -4.4781 -3.2990 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 1.9868 2.1059 0.0039 34 1 5.7392 -0.9446 0.4370 35 1 4.7610 -2.4234 0.5933 36 1 6.9276 -2.9469 -0.9209 37 1 6.5933 -2.8984 -2.5666 38 1 1.9241 -2.7716 -2.0049 39 1 2.1317 -5.2398 -0.6483 40 1 0.4226 -4.7432 -0.6498 41 1 1.7397 -7.2652 -2.6307 42 1 0.1886 -6.8860 -1.8159 43 1 0.7961 -7.1381 -4.7573 44 1 -0.7331 -7.4470 -3.8912 45 1 -1.1861 -8.0286 -6.8616 46 1 -0.7998 -4.3534 -2.5896 47 1 0.2986 -3.5165 -3.7290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028818608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:18 Heat of formation + Delta-G solvation = -14.599780 kcal Electronic energy + Delta-G solvation = -29189.682279 eV Core-core repulsion = 25180.314113 eV Total energy + Delta-G solvation = -4009.368166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51277 -39.41743 -39.03871 -37.44586 -34.40047 -33.98133 -32.95632 -32.43089 -31.75439 -29.75537 -28.66694 -27.86430 -26.09301 -25.43175 -23.77884 -22.16813 -21.26749 -20.12866 -19.81359 -19.56270 -18.98712 -18.17866 -17.27441 -16.92638 -16.75945 -16.22402 -15.86873 -15.36503 -14.99034 -14.59930 -14.54048 -14.36190 -13.82534 -13.68819 -13.48648 -13.42689 -13.13031 -12.83525 -12.68599 -12.63919 -12.24609 -12.21480 -11.90148 -11.66292 -11.36362 -11.25909 -10.83484 -10.73325 -10.32335 -10.30383 -10.08835 -9.98259 -9.93345 -9.79142 -9.62914 -9.56712 -8.74343 -8.60615 -8.53276 -8.24930 -6.75225 -5.64424 -2.97246 1.90276 2.33722 2.50709 2.80570 2.99108 3.31569 3.44805 3.49597 3.51690 3.69533 4.24275 4.55853 4.58181 4.69797 4.91859 5.03927 5.10472 5.24087 5.33007 5.34788 5.46961 5.53985 5.63701 5.75971 5.77917 5.83660 6.00778 6.02898 6.12332 6.16677 6.18026 6.44811 6.46704 6.58646 6.62010 6.67306 6.70534 6.82272 6.84956 6.97516 7.03094 7.33383 7.63413 7.70247 7.81949 7.89573 7.96103 8.33279 8.49411 9.29566 9.89953 10.56628 11.47514 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002925 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.174655 B = 9569.565033 C = 9983.028704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.128 4.128 3 C -0.009 4.009 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.081 3.919 7 C -0.081 4.081 8 C 0.514 3.486 9 N -0.856 5.856 10 O -0.520 6.520 11 C -0.194 4.194 12 C 0.590 3.410 13 O -0.550 6.550 14 N -0.712 5.712 15 C 0.132 3.868 16 C -0.116 4.116 17 H 0.078 0.922 18 C -0.134 4.134 19 C 0.178 3.822 20 N -0.606 5.606 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.143 3.857 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.401 0.599 37 H 0.405 0.595 38 H 0.407 0.593 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.020 0.980 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.394 14.713 15.533 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C -0.138 4.138 4 N -0.140 5.140 5 H 0.249 0.751 6 C -0.035 4.035 7 C -0.122 4.122 8 C 0.298 3.702 9 N -0.421 5.421 10 O -0.395 6.395 11 C -0.205 4.205 12 C 0.376 3.624 13 O -0.428 6.428 14 N -0.363 5.363 15 C 0.008 3.992 16 C -0.136 4.136 17 H 0.096 0.904 18 C -0.173 4.173 19 C 0.054 3.946 20 N -0.333 5.333 21 C -0.354 4.354 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.016 3.984 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.186 0.814 34 H 0.122 0.878 35 H 0.136 0.864 36 H 0.229 0.771 37 H 0.236 0.764 38 H 0.242 0.758 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.675 14.591 15.608 26.500 hybrid contribution 0.414 0.390 -1.301 1.419 sum 16.088 14.981 14.308 26.229 Atomic orbital electron populations 1.20165 0.89487 1.02312 1.02149 1.20430 0.95252 0.90321 1.07469 1.21438 0.82076 0.99012 1.11246 1.41204 1.08216 1.05619 1.58980 0.75104 1.19045 0.93784 0.83251 1.07415 1.20231 0.95046 1.01247 0.95675 1.20441 0.80563 0.78081 0.91130 1.43831 1.28885 1.56341 1.13021 1.90827 1.49561 1.53163 1.45932 1.19998 0.92338 0.92824 1.15324 1.17475 0.76399 0.84968 0.83588 1.90767 1.51955 1.68575 1.31499 1.46144 1.68537 1.12781 1.08812 1.21388 1.00083 0.80504 0.97186 1.22590 0.99965 0.97438 0.93597 0.90385 1.22852 0.99972 0.93790 1.00725 1.21124 0.96310 0.87301 0.89909 1.44492 1.65652 1.03523 1.19594 1.19079 1.27450 0.94172 0.94697 0.90490 1.24790 1.01333 0.95548 0.98906 1.69967 1.51240 0.99963 1.35945 0.86124 0.79346 0.77061 0.83286 1.21678 1.21722 1.20709 1.21571 0.92818 0.93244 0.90721 0.91371 0.91702 0.91823 0.81379 0.87763 0.86393 0.77144 0.76417 0.75825 0.91976 0.91381 0.92147 0.92218 0.93673 0.93953 0.93857 0.96260 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.35 36.01 0.37 -0.58 16 2 C -0.13 -1.59 6.36 -102.54 -0.65 -2.24 16 3 C -0.01 -0.09 11.82 -16.82 -0.20 -0.29 16 4 N -0.55 -4.63 5.90 -9.11 -0.05 -4.68 16 5 H 0.41 2.05 8.96 -40.82 -0.37 1.68 16 6 C 0.08 0.88 5.67 -81.89 -0.46 0.42 16 7 C -0.08 -0.63 6.01 -29.04 -0.17 -0.81 16 8 C 0.51 4.93 8.09 -10.98 -0.09 4.84 16 9 N -0.86 -5.04 8.87 31.22 0.28 -4.76 16 10 O -0.52 -7.42 16.87 5.56 0.09 -7.33 16 11 C -0.19 -2.69 6.05 -103.35 -0.62 -3.32 16 12 C 0.59 9.45 7.30 -12.59 -0.09 9.36 16 13 O -0.55 -10.37 17.11 5.25 0.09 -10.28 16 14 N -0.71 -11.04 5.44 -61.43 -0.33 -11.38 16 15 C 0.13 2.12 5.12 -4.04 -0.02 2.10 16 16 C -0.12 -2.10 3.07 -88.47 -0.27 -2.37 16 17 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 18 C -0.13 -2.57 6.42 -24.90 -0.16 -2.73 16 19 C 0.18 4.46 5.37 -3.06 -0.02 4.44 16 20 N -0.61 -16.06 3.40 -170.04 -0.58 -16.64 16 21 C -0.23 -6.51 10.28 -15.06 -0.15 -6.66 16 22 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.76 10.31 55.49 0.57 -27.19 16 25 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.14 3.08 6.56 -2.50 -0.02 3.06 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.12 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.40 1.03 8.83 -40.82 -0.36 0.67 16 37 H 0.40 2.37 8.93 -40.82 -0.36 2.00 16 38 H 0.41 6.39 8.42 -40.82 -0.34 6.05 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.08 8.04 -51.93 -0.42 0.66 16 43 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 44 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.02 0.43 7.96 -51.93 -0.41 0.01 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -38.34 394.17 -8.90 -47.24 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.22 Total: 6.60 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.66 Total: 4.85 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.12 Total: -64.66 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.18 Total: -17.61 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.34 -8.90 -47.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028818608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.636 kcal (2) G-P(sol) polarization free energy of solvation -38.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds