Wall clock time and date at job start Tue Mar 31 2020 18:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83201 * 2 1 4 4 N 1.36455 * 108.85548 * 179.97438 * 3 2 1 5 5 H 0.96996 * 124.84713 * 179.97438 * 4 3 2 6 6 C 1.34656 * 110.29848 * 359.97438 * 4 3 2 7 7 C 1.50696 * 125.80048 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47161 * 264.97237 * 7 6 4 9 9 N 1.34778 * 119.99721 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99949 * 0.02562 * 8 7 6 11 11 C 1.36767 * 108.39427 * 0.02562 * 6 4 3 12 12 C 1.47268 * 126.94025 * 180.02562 * 11 6 4 13 13 O 1.21636 * 119.99995 * 89.99647 * 12 11 6 14 14 N 1.34774 * 120.00053 * 269.99787 * 12 11 6 15 15 C 1.46498 * 120.00155 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47278 * 180.02562 * 15 14 12 17 17 H 1.09004 * 110.88537 * 54.29897 * 16 15 14 18 18 C 1.55153 * 111.00250 * 178.17874 * 16 15 14 19 19 C 1.54323 * 102.93951 * 153.57725 * 18 16 15 20 20 N 1.47024 * 107.27408 * 337.80821 * 19 18 16 21 21 C 1.36938 * 125.65160 * 178.97733 * 20 19 18 22 22 H 1.07998 * 120.00148 * 179.97438 * 21 20 19 23 23 C 1.38811 * 119.99797 * 359.97430 * 21 20 19 24 24 N 1.31619 * 120.00371 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99777 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47299 * 89.99842 * 25 23 21 27 27 H 1.48506 * 109.47347 * 209.99795 * 25 23 21 28 28 H 1.48506 * 109.47118 * 329.99903 * 25 23 21 29 29 C 1.47470 * 108.72109 * 358.97458 * 20 19 18 30 30 H 1.09005 * 109.46590 * 90.03266 * 1 2 3 31 31 H 1.09000 * 109.47387 * 210.02489 * 1 2 3 32 32 H 1.08995 * 109.47241 * 330.03270 * 1 2 3 33 33 H 1.07998 * 125.57525 * 0.25162 * 3 2 1 34 34 H 1.08995 * 109.47348 * 24.97572 * 7 6 4 35 35 H 1.09002 * 109.46811 * 144.97249 * 7 6 4 36 36 H 0.96997 * 120.00463 * 0.02562 * 9 8 7 37 37 H 0.96996 * 119.99167 * 180.02562 * 9 8 7 38 38 H 0.97003 * 119.99947 * 0.02562 * 14 12 11 39 39 H 1.08999 * 109.47180 * 300.00596 * 15 14 12 40 40 H 1.08999 * 109.46948 * 59.99859 * 15 14 12 41 41 H 1.08997 * 110.72271 * 271.93875 * 18 16 15 42 42 H 1.08999 * 110.72403 * 35.03933 * 18 16 15 43 43 H 1.08995 * 109.88606 * 97.22347 * 19 18 16 44 44 H 1.09006 * 109.88572 * 218.23553 * 19 18 16 45 45 H 0.96995 * 120.00277 * 179.97438 * 24 23 21 46 46 H 1.08998 * 110.34569 * 265.25875 * 29 20 19 47 47 H 1.08994 * 110.40927 * 142.91553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2414 0.0003 6 6 3.6657 -0.6902 0.0015 7 6 4.9226 -1.5215 0.0029 8 6 5.2739 -1.9034 -1.4120 9 7 6.3671 -2.6529 -1.6559 10 8 4.5728 -1.5363 -2.3310 11 6 2.3864 -1.1740 0.0010 12 6 1.9750 -2.5880 0.0022 13 8 1.8042 -3.1709 1.0561 14 7 1.7876 -3.2363 -1.1644 15 6 1.3788 -4.6431 -1.1632 16 6 1.2380 -5.1345 -2.6053 17 1 2.1529 -4.9523 -3.1691 18 6 0.8497 -6.6361 -2.6457 19 6 0.1118 -6.7661 -3.9948 20 7 -0.3651 -5.4249 -4.3626 21 6 -1.0518 -5.1071 -5.5039 22 1 -1.3599 -4.0875 -5.6826 23 6 -1.3519 -6.0955 -6.4312 24 7 -0.9761 -7.3380 -6.2138 25 14 -2.2881 -5.6618 -7.9884 26 1 -1.3259 -5.2970 -9.0591 27 1 -3.0932 -6.8312 -8.4239 28 1 -3.1894 -4.5125 -7.7203 29 6 0.0183 -4.4781 -3.2990 30 1 -0.3633 -0.0006 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 1.9868 2.1059 0.0039 34 1 5.7392 -0.9446 0.4370 35 1 4.7610 -2.4234 0.5933 36 1 6.9276 -2.9469 -0.9209 37 1 6.5933 -2.8984 -2.5666 38 1 1.9241 -2.7716 -2.0049 39 1 2.1317 -5.2398 -0.6483 40 1 0.4226 -4.7432 -0.6498 41 1 1.7397 -7.2652 -2.6307 42 1 0.1886 -6.8860 -1.8159 43 1 0.7961 -7.1381 -4.7573 44 1 -0.7331 -7.4470 -3.8912 45 1 -1.1861 -8.0286 -6.8616 46 1 -0.7998 -4.3534 -2.5896 47 1 0.2986 -3.5165 -3.7290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028818608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:17 Heat of formation + Delta-G solvation = -45.217176 kcal Electronic energy + Delta-G solvation = -29191.009949 eV Core-core repulsion = 25180.314113 eV Total energy + Delta-G solvation = -4010.695836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30768 -40.36262 -40.13411 -39.14177 -35.95685 -34.66090 -34.28912 -33.71596 -32.62565 -31.57012 -30.06498 -29.09712 -27.31495 -26.81182 -25.43142 -23.33974 -22.07485 -21.86524 -21.40676 -20.35607 -20.20919 -18.92581 -18.76607 -17.93142 -17.59282 -17.38704 -17.20786 -16.68305 -16.34179 -16.15808 -15.72973 -15.51369 -15.31616 -14.70429 -14.56273 -14.49995 -14.17175 -14.09027 -13.93426 -13.81216 -13.52326 -13.44336 -13.33611 -13.03366 -13.01537 -12.78292 -12.63679 -12.18525 -12.02947 -11.93901 -11.86975 -11.56238 -11.48154 -11.09198 -10.98566 -10.71013 -10.60702 -10.04710 -9.46484 -9.02468 -8.90582 -7.85401 -5.21134 1.10607 1.44759 1.47205 1.55967 1.61425 1.65147 1.66439 2.25599 2.49012 2.49691 2.80806 3.32298 3.57063 3.59009 3.78459 3.97740 4.00634 4.03661 4.15371 4.18876 4.28179 4.42259 4.43165 4.58380 4.61330 4.65688 4.71625 4.79437 4.88445 4.89692 5.00940 5.04414 5.06355 5.15910 5.30312 5.35447 5.44078 5.48579 5.67181 5.76907 5.85731 5.91503 6.04626 6.19522 6.47848 6.56883 6.74595 7.10253 7.25941 7.37830 7.76962 8.41900 9.25135 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002925 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.174655 B = 9569.565033 C = 9983.028704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.166 4.166 3 C 0.007 3.993 4 N -0.531 5.531 5 H 0.432 0.568 6 C 0.087 3.913 7 C -0.079 4.079 8 C 0.512 3.488 9 N -0.838 5.838 10 O -0.575 6.575 11 C -0.241 4.241 12 C 0.596 3.404 13 O -0.585 6.585 14 N -0.709 5.709 15 C 0.143 3.857 16 C -0.094 4.094 17 H 0.081 0.919 18 C -0.120 4.120 19 C 0.184 3.816 20 N -0.628 5.628 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.270 1.270 29 C 0.140 3.860 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.205 0.795 34 H 0.150 0.850 35 H 0.119 0.881 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.406 0.594 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.013 0.987 44 H 0.007 0.993 45 H 0.247 0.753 46 H 0.019 0.981 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.345 16.746 16.502 29.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.172 4.172 3 C -0.122 4.122 4 N -0.126 5.126 5 H 0.272 0.728 6 C -0.031 4.031 7 C -0.120 4.120 8 C 0.296 3.704 9 N -0.402 5.402 10 O -0.454 6.454 11 C -0.251 4.251 12 C 0.383 3.617 13 O -0.466 6.466 14 N -0.358 5.358 15 C 0.019 3.981 16 C -0.113 4.113 17 H 0.099 0.901 18 C -0.159 4.159 19 C 0.059 3.941 20 N -0.355 5.355 21 C -0.375 4.375 22 H 0.097 0.903 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.808 3.192 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.195 1.195 29 C 0.015 3.985 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.250 0.750 37 H 0.238 0.762 38 H 0.241 0.759 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.031 0.969 44 H 0.025 0.975 45 H 0.056 0.944 46 H 0.036 0.964 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.695 16.647 16.615 29.433 hybrid contribution -0.146 -0.208 -1.582 1.602 sum 17.549 16.440 15.033 28.359 Atomic orbital electron populations 1.20112 0.89632 1.02267 1.01668 1.20681 0.95738 0.90972 1.09827 1.21926 0.81875 0.99825 1.08587 1.41244 1.08844 1.05153 1.57376 0.72777 1.19368 0.93846 0.84339 1.05509 1.20345 0.95263 1.01579 0.94787 1.20732 0.80610 0.77817 0.91209 1.43711 1.27888 1.54724 1.13927 1.90810 1.51497 1.55559 1.47487 1.20037 0.94337 0.91853 1.18887 1.17806 0.75258 0.85838 0.82799 1.90731 1.53622 1.69676 1.32529 1.46117 1.68334 1.12464 1.08917 1.21207 1.00255 0.81228 0.95382 1.22373 0.98243 0.96176 0.94544 0.90108 1.22720 1.00616 0.95023 0.97520 1.20914 0.94783 0.86206 0.92159 1.44815 1.65581 1.05033 1.20054 1.19470 1.27733 0.94463 0.95819 0.90257 1.25662 1.02556 0.95503 1.02141 1.70189 1.52271 1.00760 1.36758 0.85064 0.78049 0.76919 0.79216 1.21125 1.21861 1.19473 1.21696 0.94204 0.92801 0.89781 0.92066 0.94180 0.89398 0.77828 0.83274 0.86315 0.75020 0.76220 0.75879 0.90396 0.92224 0.89376 0.90803 0.96888 0.97516 0.94361 0.96368 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 10.35 71.24 0.74 -1.07 16 2 C -0.17 -3.98 6.36 -18.52 -0.12 -4.10 16 3 C 0.01 0.12 11.82 83.11 0.98 1.10 16 4 N -0.53 -7.46 5.90 -182.73 -1.08 -8.54 16 5 H 0.43 2.65 8.96 -92.71 -0.83 1.82 16 6 C 0.09 1.72 5.67 41.78 0.24 1.96 16 7 C -0.08 -1.03 6.01 29.10 0.17 -0.85 16 8 C 0.51 8.83 8.09 87.66 0.71 9.54 16 9 N -0.84 -7.92 8.87 -173.53 -1.54 -9.46 16 10 O -0.57 -15.92 16.87 -3.04 -0.05 -15.97 16 11 C -0.24 -6.54 6.05 -19.04 -0.12 -6.65 16 12 C 0.60 19.11 7.30 86.62 0.63 19.74 16 13 O -0.58 -22.22 17.11 -4.14 -0.07 -22.29 16 14 N -0.71 -21.89 5.44 -466.52 -2.54 -24.43 16 15 C 0.14 4.47 5.12 86.38 0.44 4.91 16 16 C -0.09 -3.32 3.07 -9.40 -0.03 -3.35 16 17 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 18 C -0.12 -4.51 6.42 31.78 0.20 -4.30 16 19 C 0.18 9.49 5.37 86.73 0.47 9.96 16 20 N -0.63 -34.11 3.40 -691.88 -2.35 -36.46 16 21 C -0.25 -14.48 10.28 84.03 0.86 -13.62 16 22 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 23 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 24 N -0.95 -58.94 10.31 21.65 0.22 -58.71 16 25 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 29 C 0.14 6.12 6.56 86.85 0.57 6.69 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.40 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.20 1.71 8.06 -2.91 -0.02 1.68 16 34 H 0.15 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.12 1.58 8.05 -2.39 -0.02 1.56 16 36 H 0.42 0.90 8.83 -92.71 -0.82 0.08 16 37 H 0.41 4.00 8.93 -92.71 -0.83 3.17 16 38 H 0.41 12.83 8.42 -92.71 -0.78 12.05 16 39 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.06 1.99 8.04 -2.39 -0.02 1.97 16 41 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 42 H 0.07 2.58 8.04 -2.39 -0.02 2.56 16 43 H 0.01 0.74 7.38 -2.39 -0.02 0.72 16 44 H 0.01 0.38 7.51 -2.38 -0.02 0.36 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.02 0.81 7.96 -2.39 -0.02 0.80 16 47 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -87.18 394.17 -1.38 -88.56 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -2.22 Total: 21.43 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 6.22 Total: 16.54 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -7.28 Total: -137.59 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.12 Total: -38.26 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -87.18 -1.38 -88.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028818608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.343 kcal (2) G-P(sol) polarization free energy of solvation -87.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds