Wall clock time and date at job start Tue Mar 31 2020 17:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32173 * 119.14214 * 2 1 4 4 C 1.32367 * 120.60681 * 179.97438 * 3 2 1 5 5 C 1.47504 * 120.50720 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99330 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99908 * 359.97438 * 5 4 3 8 8 C 1.46502 * 119.99355 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.24956 * 324.65572 * 8 7 5 10 10 C 1.54843 * 109.35442 * 205.00225 * 8 7 5 11 11 C 1.50133 * 110.81433 * 200.92630 * 10 8 7 12 12 C 1.52537 * 105.40949 * 97.68395 * 11 10 8 13 13 C 1.46233 * 114.27505 * 270.59104 * 12 11 10 14 14 N 1.50169 * 107.53454 * 58.41356 * 13 12 11 15 15 C 1.36931 * 120.53924 * 109.56355 * 14 13 12 16 16 H 1.07996 * 120.00359 * 172.85102 * 15 14 13 17 17 C 1.38816 * 119.99720 * 352.84565 * 15 14 13 18 18 N 1.31610 * 120.00352 * 319.29691 * 17 15 14 19 19 Si 1.86800 * 119.99557 * 139.29630 * 17 15 14 20 20 H 1.48502 * 109.46986 * 269.99911 * 19 17 15 21 21 H 1.48503 * 109.47198 * 150.00437 * 19 17 15 22 22 H 1.48497 * 109.47483 * 30.00376 * 19 17 15 23 23 C 1.43437 * 118.92249 * 289.84046 * 14 13 12 24 24 C 1.46676 * 118.97879 * 0.24660 * 4 3 2 25 25 O 1.21857 * 120.77917 * 179.74951 * 24 4 3 26 26 N 1.35148 * 118.43066 * 359.44892 * 24 4 3 27 27 H 0.97001 * 120.36639 * 180.25574 * 26 24 4 28 28 C 1.34896 * 119.26606 * 0.57464 * 26 24 4 29 29 C 1.50697 * 119.50190 * 179.70636 * 28 26 24 30 30 H 1.08995 * 109.47164 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46989 * 120.00260 * 1 2 3 32 32 H 1.08999 * 109.47440 * 239.99765 * 1 2 3 33 33 H 0.96995 * 120.00714 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.21360 * 80.58613 * 10 8 7 35 35 H 1.09001 * 109.21273 * 321.27253 * 10 8 7 36 36 H 1.09000 * 110.25000 * 338.71443 * 11 10 8 37 37 H 1.08998 * 110.37335 * 216.71650 * 11 10 8 38 38 H 1.09000 * 108.51819 * 149.35268 * 12 11 10 39 39 H 1.08999 * 108.40112 * 31.74896 * 12 11 10 40 40 H 1.09001 * 109.84973 * 298.90574 * 13 12 11 41 41 H 1.08998 * 109.89795 * 177.95093 * 13 12 11 42 42 H 0.97004 * 120.00139 * 353.65946 * 18 17 15 43 43 H 1.09002 * 108.15737 * 213.02764 * 23 14 13 44 44 H 1.08996 * 108.16255 * 329.59359 * 23 14 13 45 45 H 1.09003 * 109.47322 * 269.97803 * 29 28 26 46 46 H 1.08997 * 109.47267 * 29.97369 * 29 28 26 47 47 H 1.09001 * 109.47518 * 149.97630 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1883 0.0005 5 6 4.1899 2.4778 -0.0001 6 8 5.4057 2.4980 -0.0001 7 7 3.4966 3.6336 -0.0016 8 6 4.2079 4.9143 -0.0028 9 1 5.1160 4.8216 0.5930 10 6 3.2994 6.0065 0.6131 11 6 3.7461 7.3749 0.1867 12 6 2.8434 7.7492 -0.9846 13 6 3.3525 7.3364 -2.2918 14 7 3.5310 5.8457 -2.2576 15 6 2.7014 5.0289 -2.9785 16 1 2.9065 3.9704 -3.0409 17 6 1.5967 5.5614 -3.6289 18 7 0.8673 6.4844 -3.0390 19 14 1.1456 4.9678 -5.3417 20 1 1.8353 5.8071 -6.3541 21 1 -0.3237 5.0717 -5.5306 22 1 1.5663 3.5527 -5.5020 23 6 4.5809 5.2911 -1.4529 24 6 4.2170 -0.0763 -0.0044 25 8 5.4356 -0.0834 -0.0087 26 7 3.5185 -1.2332 0.0021 27 1 3.9815 -2.0856 0.0028 28 6 2.1702 -1.1895 0.0010 29 6 1.3860 -2.4763 0.0015 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3634 -0.5139 0.8899 33 1 2.5268 3.6175 -0.0020 34 1 3.3424 5.9379 1.7001 35 1 2.2725 5.8459 0.2848 36 1 4.7878 7.3491 -0.1331 37 1 3.6200 8.0866 1.0025 38 1 2.7136 8.8315 -0.9896 39 1 1.8692 7.2855 -0.8301 40 1 4.3102 7.8194 -2.4854 41 1 2.6383 7.6058 -3.0700 42 1 1.0449 6.7269 -2.1167 43 1 4.9498 4.3927 -1.9479 44 1 5.3977 6.0118 -1.4162 45 1 1.1973 -2.7873 -1.0260 46 1 1.9567 -3.2494 0.5160 47 1 0.4367 -2.3232 0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034256897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:31 Heat of formation + Delta-G solvation = 2.389779 kcal Electronic energy + Delta-G solvation = -30309.107052 eV Core-core repulsion = 26300.475608 eV Total energy + Delta-G solvation = -4008.631443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.79168 -39.29217 -38.05585 -37.69343 -35.48911 -34.31603 -33.33198 -33.08629 -31.06956 -30.09278 -29.18266 -26.95559 -25.89277 -24.75208 -24.27511 -23.25969 -22.44816 -20.70429 -20.05880 -19.18879 -18.70826 -18.34314 -17.01076 -16.74780 -16.31087 -15.95980 -15.40699 -15.05404 -14.58122 -14.35443 -14.21269 -14.10493 -13.72498 -13.59326 -13.49978 -13.38426 -13.15978 -13.05970 -12.62180 -12.32386 -12.17150 -12.06057 -11.93518 -11.75675 -11.39665 -11.26383 -10.97493 -10.78381 -10.51477 -10.31154 -10.09647 -10.01862 -9.91404 -9.74810 -9.66060 -9.39649 -9.19275 -8.59235 -8.13127 -8.00775 -6.88344 -6.10170 -2.93783 0.08204 1.60445 2.28988 2.87497 3.50891 3.57082 3.60332 3.75949 3.82309 3.87496 4.13675 4.24255 4.48297 4.66876 4.84537 5.03849 5.10944 5.21478 5.24775 5.29075 5.38186 5.40666 5.45554 5.49501 5.71614 5.81795 5.94174 6.02437 6.06894 6.10257 6.21434 6.26712 6.32416 6.42729 6.47049 6.67822 6.75996 6.77769 6.93542 6.99643 7.19637 7.30057 7.31648 7.45832 7.69403 8.07082 8.16455 8.60362 8.76270 9.15379 9.92792 10.36820 11.20270 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004333 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.682889 B = 6460.075870 C = 7747.119664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.024 4.024 3 N -0.349 5.349 4 C 0.018 3.982 5 C 0.575 3.425 6 O -0.523 6.523 7 N -0.682 5.682 8 C 0.114 3.886 9 H 0.077 0.923 10 C -0.111 4.111 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.129 3.871 14 N -0.586 5.586 15 C -0.345 4.345 16 H 0.064 0.936 17 C -0.016 4.016 18 N -0.903 5.903 19 Si 1.037 2.963 20 H -0.295 1.295 21 H -0.294 1.294 22 H -0.295 1.295 23 C 0.152 3.848 24 C 0.496 3.504 25 O -0.486 6.486 26 N -0.588 5.588 27 H 0.418 0.582 28 C 0.142 3.858 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.045 0.955 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.024 0.976 41 H 0.095 0.905 42 H 0.273 0.727 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.714 -14.107 9.419 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 N -0.066 5.066 4 C -0.151 4.151 5 C 0.358 3.642 6 O -0.398 6.398 7 N -0.332 5.332 8 C 0.007 3.993 9 H 0.095 0.905 10 C -0.149 4.149 11 C -0.148 4.148 12 C -0.174 4.174 13 C 0.005 3.995 14 N -0.307 5.307 15 C -0.473 4.473 16 H 0.082 0.918 17 C -0.218 4.218 18 N -0.545 5.545 19 Si 0.868 3.132 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.222 1.222 23 C 0.022 3.978 24 C 0.288 3.712 25 O -0.357 6.357 26 N -0.224 5.224 27 H 0.258 0.742 28 C 0.027 3.973 29 C -0.186 4.186 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.244 0.756 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.669 -13.051 8.103 15.592 hybrid contribution 1.054 -1.658 1.263 2.336 sum -1.616 -14.710 9.366 17.513 Atomic orbital electron populations 1.20538 0.87009 1.04797 1.01987 1.20161 0.97941 0.85584 1.11300 1.67617 1.08452 1.29372 1.01166 1.24091 0.88846 0.94121 1.08006 1.16976 0.86522 0.82203 0.78461 1.90841 1.12355 1.86575 1.50045 1.45776 1.10905 1.04623 1.71927 1.22830 0.94559 0.81196 1.00736 0.90529 1.21663 1.00563 0.94450 0.98252 1.20945 1.00231 0.95624 0.97994 1.21099 1.00360 0.99290 0.96691 1.20601 0.98784 0.83527 0.96588 1.44409 1.35332 1.00888 1.50080 1.19937 1.07696 0.92567 1.27063 0.91846 1.25333 0.92636 0.99353 1.04522 1.70823 1.34050 1.35316 1.14344 0.83935 0.75517 0.75282 0.78508 1.22315 1.22090 1.22197 1.20643 0.90941 0.97242 0.88999 1.19131 0.88437 0.83986 0.79669 1.91041 1.11443 1.85300 1.47947 1.43691 1.06363 1.11840 1.60499 0.74162 1.21473 0.83502 0.98935 0.93353 1.21196 1.00847 0.91754 1.04798 0.89664 0.90801 0.90967 0.75645 0.93599 0.90879 0.91727 0.92637 0.94248 0.90986 0.95826 0.88735 0.91364 0.93975 0.94297 0.88495 0.90168 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 8.82 36.00 0.32 -0.39 16 2 C -0.02 -0.28 6.70 -83.18 -0.56 -0.83 16 3 N -0.35 -5.44 9.55 -4.84 -0.05 -5.49 16 4 C 0.02 0.33 6.96 -80.46 -0.56 -0.23 16 5 C 0.58 11.91 7.62 -12.48 -0.10 11.82 16 6 O -0.52 -12.41 15.17 -15.19 -0.23 -12.64 16 7 N -0.68 -13.40 5.07 -53.20 -0.27 -13.67 16 8 C 0.11 2.23 2.91 -66.22 -0.19 2.04 16 9 H 0.08 1.49 7.57 -51.93 -0.39 1.09 16 10 C -0.11 -1.96 5.23 -27.19 -0.14 -2.10 16 11 C -0.11 -1.87 5.76 -28.39 -0.16 -2.03 16 12 C -0.14 -2.66 4.96 -30.18 -0.15 -2.81 16 13 C 0.13 2.92 5.22 -5.21 -0.03 2.89 16 14 N -0.59 -14.19 2.62 -175.41 -0.46 -14.65 16 15 C -0.34 -9.33 9.46 -15.06 -0.14 -9.47 16 16 H 0.06 1.83 8.05 -52.49 -0.42 1.40 16 17 C -0.02 -0.45 4.53 -17.43 -0.08 -0.53 16 18 N -0.90 -25.40 11.99 55.49 0.67 -24.73 16 19 Si 1.04 25.11 30.05 -169.99 -5.11 20.00 16 20 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 22 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 23 C 0.15 3.36 4.74 -4.93 -0.02 3.34 16 24 C 0.50 8.21 7.93 -12.69 -0.10 8.11 16 25 O -0.49 -9.85 16.40 -15.43 -0.25 -10.10 16 26 N -0.59 -6.26 5.29 -9.46 -0.05 -6.31 16 27 H 0.42 3.06 8.81 -40.82 -0.36 2.70 16 28 C 0.14 1.26 6.78 -81.98 -0.56 0.70 16 29 C -0.13 -0.47 9.59 36.00 0.35 -0.12 16 30 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.40 7.36 -51.93 -0.38 0.02 16 33 H 0.41 7.91 7.80 -40.82 -0.32 7.60 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.44 6.58 -51.93 -0.34 1.10 16 36 H 0.06 1.10 6.28 -51.93 -0.33 0.77 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.58 4.65 -51.93 -0.24 1.34 16 40 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 41 H 0.09 2.42 5.61 -51.93 -0.29 2.13 16 42 H 0.27 7.47 4.95 -40.82 -0.20 7.27 16 43 H 0.04 1.04 7.81 -51.93 -0.41 0.64 16 44 H 0.04 0.81 6.89 -51.93 -0.36 0.45 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.10 0.24 6.44 -51.93 -0.33 -0.09 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -35.33 368.50 -8.87 -44.20 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.55 Total: 7.46 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: -2.13 Total: 10.37 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.16 Total: -64.85 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.48 Total: -22.74 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.11 Total: 20.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.33 -8.87 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034256897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.593 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds