Wall clock time and date at job start Tue Mar 31 2020 17:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32173 * 119.14214 * 2 1 4 4 C 1.32367 * 120.60681 * 179.97438 * 3 2 1 5 5 C 1.47504 * 120.50720 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99330 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99908 * 359.97438 * 5 4 3 8 8 C 1.46502 * 119.99355 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.24956 * 324.65572 * 8 7 5 10 10 C 1.54843 * 109.35442 * 205.00225 * 8 7 5 11 11 C 1.50133 * 110.81433 * 200.92630 * 10 8 7 12 12 C 1.52537 * 105.40949 * 97.68395 * 11 10 8 13 13 C 1.46233 * 114.27505 * 270.59104 * 12 11 10 14 14 N 1.50169 * 107.53454 * 58.41356 * 13 12 11 15 15 C 1.36931 * 120.53924 * 109.56355 * 14 13 12 16 16 H 1.07996 * 120.00359 * 172.85102 * 15 14 13 17 17 C 1.38816 * 119.99720 * 352.84565 * 15 14 13 18 18 N 1.31610 * 120.00352 * 319.29691 * 17 15 14 19 19 Si 1.86800 * 119.99557 * 139.29630 * 17 15 14 20 20 H 1.48502 * 109.46986 * 269.99911 * 19 17 15 21 21 H 1.48503 * 109.47198 * 150.00437 * 19 17 15 22 22 H 1.48497 * 109.47483 * 30.00376 * 19 17 15 23 23 C 1.43437 * 118.92249 * 289.84046 * 14 13 12 24 24 C 1.46676 * 118.97879 * 0.24660 * 4 3 2 25 25 O 1.21857 * 120.77917 * 179.74951 * 24 4 3 26 26 N 1.35148 * 118.43066 * 359.44892 * 24 4 3 27 27 H 0.97001 * 120.36639 * 180.25574 * 26 24 4 28 28 C 1.34896 * 119.26606 * 0.57464 * 26 24 4 29 29 C 1.50697 * 119.50190 * 179.70636 * 28 26 24 30 30 H 1.08995 * 109.47164 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46989 * 120.00260 * 1 2 3 32 32 H 1.08999 * 109.47440 * 239.99765 * 1 2 3 33 33 H 0.96995 * 120.00714 * 0.02562 * 7 5 4 34 34 H 1.08998 * 109.21360 * 80.58613 * 10 8 7 35 35 H 1.09001 * 109.21273 * 321.27253 * 10 8 7 36 36 H 1.09000 * 110.25000 * 338.71443 * 11 10 8 37 37 H 1.08998 * 110.37335 * 216.71650 * 11 10 8 38 38 H 1.09000 * 108.51819 * 149.35268 * 12 11 10 39 39 H 1.08999 * 108.40112 * 31.74896 * 12 11 10 40 40 H 1.09001 * 109.84973 * 298.90574 * 13 12 11 41 41 H 1.08998 * 109.89795 * 177.95093 * 13 12 11 42 42 H 0.97004 * 120.00139 * 353.65946 * 18 17 15 43 43 H 1.09002 * 108.15737 * 213.02764 * 23 14 13 44 44 H 1.08996 * 108.16255 * 329.59359 * 23 14 13 45 45 H 1.09003 * 109.47322 * 269.97803 * 29 28 26 46 46 H 1.08997 * 109.47267 * 29.97369 * 29 28 26 47 47 H 1.09001 * 109.47518 * 149.97630 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1883 0.0005 5 6 4.1899 2.4778 -0.0001 6 8 5.4057 2.4980 -0.0001 7 7 3.4966 3.6336 -0.0016 8 6 4.2079 4.9143 -0.0028 9 1 5.1160 4.8216 0.5930 10 6 3.2994 6.0065 0.6131 11 6 3.7461 7.3749 0.1867 12 6 2.8434 7.7492 -0.9846 13 6 3.3525 7.3364 -2.2918 14 7 3.5310 5.8457 -2.2576 15 6 2.7014 5.0289 -2.9785 16 1 2.9065 3.9704 -3.0409 17 6 1.5967 5.5614 -3.6289 18 7 0.8673 6.4844 -3.0390 19 14 1.1456 4.9678 -5.3417 20 1 1.8353 5.8071 -6.3541 21 1 -0.3237 5.0717 -5.5306 22 1 1.5663 3.5527 -5.5020 23 6 4.5809 5.2911 -1.4529 24 6 4.2170 -0.0763 -0.0044 25 8 5.4356 -0.0834 -0.0087 26 7 3.5185 -1.2332 0.0021 27 1 3.9815 -2.0856 0.0028 28 6 2.1702 -1.1895 0.0010 29 6 1.3860 -2.4763 0.0015 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3634 -0.5139 0.8899 33 1 2.5268 3.6175 -0.0020 34 1 3.3424 5.9379 1.7001 35 1 2.2725 5.8459 0.2848 36 1 4.7878 7.3491 -0.1331 37 1 3.6200 8.0866 1.0025 38 1 2.7136 8.8315 -0.9896 39 1 1.8692 7.2855 -0.8301 40 1 4.3102 7.8194 -2.4854 41 1 2.6383 7.6058 -3.0700 42 1 1.0449 6.7269 -2.1167 43 1 4.9498 4.3927 -1.9479 44 1 5.3977 6.0118 -1.4162 45 1 1.1973 -2.7873 -1.0260 46 1 1.9567 -3.2494 0.5160 47 1 0.4367 -2.3232 0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034256897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:30 Heat of formation + Delta-G solvation = -23.675178 kcal Electronic energy + Delta-G solvation = -30310.237313 eV Core-core repulsion = 26300.475608 eV Total energy + Delta-G solvation = -4009.761705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.89391 -40.86344 -39.50536 -39.09647 -36.60464 -36.06117 -34.88692 -34.13595 -32.96362 -31.66715 -29.97929 -28.16573 -27.59361 -25.85604 -25.61475 -24.84066 -23.94546 -22.26637 -21.52465 -20.86533 -19.88931 -19.48146 -18.98074 -18.01298 -17.40253 -17.30018 -16.92866 -16.63204 -16.32381 -15.90853 -15.57864 -15.23660 -15.13138 -15.02850 -14.94084 -14.32008 -14.11587 -13.96463 -13.86699 -13.81969 -13.73485 -13.45063 -12.83478 -12.78385 -12.75228 -12.53691 -12.44815 -12.40456 -12.37727 -12.15686 -11.94490 -11.75403 -11.53546 -11.32983 -11.26473 -11.16344 -10.52001 -10.35925 -10.00024 -9.12026 -8.83303 -8.25610 -5.05020 -0.97699 0.48095 1.23646 1.55286 1.58986 1.62737 1.82125 2.21913 2.56534 2.68336 2.94514 3.01674 3.15027 3.39797 3.46956 3.72499 3.79628 3.92506 4.01304 4.24661 4.38168 4.43250 4.47236 4.54577 4.62863 4.66454 4.69502 4.75338 4.86135 4.90824 4.93669 5.04646 5.06057 5.13460 5.15869 5.19456 5.22109 5.30559 5.41193 5.49459 5.50220 5.62756 5.64874 5.93339 6.35644 6.51291 6.53413 6.66902 7.12334 7.22824 7.89325 8.32573 9.06955 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004333 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.682889 B = 6460.075870 C = 7747.119664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.052 4.052 3 N -0.348 5.348 4 C -0.064 4.064 5 C 0.572 3.428 6 O -0.570 6.570 7 N -0.683 5.683 8 C 0.119 3.881 9 H 0.078 0.922 10 C -0.100 4.100 11 C -0.101 4.101 12 C -0.128 4.128 13 C 0.132 3.868 14 N -0.597 5.597 15 C -0.347 4.347 16 H 0.035 0.965 17 C -0.053 4.053 18 N -0.921 5.921 19 Si 1.082 2.918 20 H -0.291 1.291 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.158 3.842 24 C 0.492 3.508 25 O -0.540 6.540 26 N -0.562 5.562 27 H 0.439 0.561 28 C 0.199 3.801 29 C -0.131 4.131 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.271 0.729 43 H 0.003 0.997 44 H 0.052 0.948 45 H 0.124 0.876 46 H 0.110 0.890 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -16.660 10.384 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.183 4.183 3 N -0.066 5.066 4 C -0.225 4.225 5 C 0.358 3.642 6 O -0.448 6.448 7 N -0.332 5.332 8 C 0.011 3.989 9 H 0.096 0.904 10 C -0.138 4.138 11 C -0.139 4.139 12 C -0.167 4.167 13 C 0.009 3.991 14 N -0.320 5.320 15 C -0.476 4.476 16 H 0.053 0.947 17 C -0.252 4.252 18 N -0.565 5.565 19 Si 0.910 3.090 20 H -0.219 1.219 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.029 3.971 24 C 0.287 3.713 25 O -0.417 6.417 26 N -0.197 5.197 27 H 0.283 0.717 28 C 0.080 3.920 29 C -0.187 4.187 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.242 0.758 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.021 0.979 44 H 0.070 0.930 45 H 0.142 0.858 46 H 0.128 0.872 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.880 -15.580 9.085 18.684 hybrid contribution 1.538 -1.198 0.973 2.179 sum -3.342 -16.778 10.058 19.845 Atomic orbital electron populations 1.20701 0.84145 1.04314 1.04923 1.21012 0.99818 0.85352 1.12075 1.67491 1.07706 1.32130 0.99277 1.23300 0.89601 0.93236 1.16393 1.17471 0.86263 0.83483 0.76965 1.90774 1.14199 1.87501 1.52372 1.45742 1.10655 1.04697 1.72078 1.22678 0.95347 0.82085 0.98743 0.90444 1.21583 0.98512 0.94124 0.99618 1.20940 0.99517 0.95649 0.97790 1.20933 0.99458 1.00175 0.96113 1.20572 0.98687 0.82420 0.97465 1.44430 1.35134 1.01523 1.50876 1.19796 1.07936 0.91741 1.28145 0.94717 1.26224 0.92797 0.99697 1.06523 1.70863 1.34716 1.36329 1.14570 0.83295 0.75308 0.75144 0.75267 1.21890 1.21790 1.21695 1.20576 0.90717 0.95796 0.90038 1.18975 0.87840 0.85036 0.79468 1.90994 1.13403 1.86164 1.51159 1.43624 1.07303 1.11346 1.57445 0.71687 1.22491 0.82552 1.00929 0.85991 1.21609 1.01320 0.88726 1.07088 0.92042 0.88400 0.87292 0.75787 0.90920 0.93107 0.91447 0.89171 0.92242 0.93469 0.94391 0.91826 0.91625 0.97870 0.92962 0.85774 0.87158 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 8.82 71.23 0.63 -0.44 16 2 C -0.05 -1.08 6.70 42.03 0.28 -0.80 16 3 N -0.35 -11.15 9.55 -169.24 -1.62 -12.77 16 4 C -0.06 -2.45 6.96 43.71 0.30 -2.15 16 5 C 0.57 25.88 7.62 86.69 0.66 26.54 16 6 O -0.57 -29.60 15.17 15.56 0.24 -29.36 16 7 N -0.68 -28.92 5.07 -440.50 -2.24 -31.16 16 8 C 0.12 4.87 2.91 46.10 0.13 5.00 16 9 H 0.08 3.15 7.57 -2.39 -0.02 3.14 16 10 C -0.10 -3.54 5.23 30.30 0.16 -3.38 16 11 C -0.10 -3.29 5.76 29.52 0.17 -3.12 16 12 C -0.13 -4.99 4.96 28.36 0.14 -4.85 16 13 C 0.13 6.08 5.22 83.58 0.44 6.51 16 14 N -0.60 -30.18 2.62 -708.87 -1.86 -32.04 16 15 C -0.35 -19.72 9.46 84.04 0.80 -18.92 16 16 H 0.03 2.14 8.05 -2.91 -0.02 2.11 16 17 C -0.05 -2.99 4.53 84.86 0.38 -2.61 16 18 N -0.92 -53.06 11.99 21.65 0.26 -52.81 16 19 Si 1.08 51.98 30.05 68.60 2.06 54.04 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.16 7.38 4.74 87.42 0.41 7.80 16 24 C 0.49 16.94 7.93 86.39 0.68 17.62 16 25 O -0.54 -23.39 16.40 14.73 0.24 -23.14 16 26 N -0.56 -10.80 5.29 -301.77 -1.60 -12.40 16 27 H 0.44 5.06 8.81 -92.71 -0.82 4.24 16 28 C 0.20 2.73 6.78 41.61 0.28 3.01 16 29 C -0.13 -0.04 9.59 71.23 0.68 0.64 16 30 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 32 H 0.11 0.60 7.36 -2.39 -0.02 0.58 16 33 H 0.41 17.05 7.80 -92.71 -0.72 16.33 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 2.04 6.58 -2.39 -0.02 2.03 16 36 H 0.07 2.19 6.28 -2.39 -0.02 2.17 16 37 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.11 4.65 -2.39 -0.01 2.10 16 40 H 0.04 1.61 8.13 -2.39 -0.02 1.59 16 41 H 0.06 3.34 5.61 -2.39 -0.01 3.33 16 42 H 0.27 15.29 4.95 -92.71 -0.46 14.83 16 43 H 0.00 0.16 7.81 -2.39 -0.02 0.14 16 44 H 0.05 2.24 6.89 -2.39 -0.02 2.23 16 45 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.13 -0.41 6.44 -2.39 -0.02 -0.42 16 Total: -1.00 -87.10 368.50 1.45 -85.65 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: -0.20 Total: 23.14 kcal Atomic # 6 Polarization: 24.69 SS G_CDS: 6.16 Total: 30.85 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -7.04 Total: -141.17 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: 0.48 Total: -52.51 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.06 Total: 54.04 kcal Total: -87.10 1.45 -85.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034256897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.975 kcal (2) G-P(sol) polarization free energy of solvation -87.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds