Wall clock time and date at job start Tue Mar 31 2020 17:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 119.14378 * 2 1 4 4 C 1.32372 * 120.60245 * 179.75834 * 3 2 1 5 5 C 1.47498 * 120.50448 * 180.25814 * 4 3 2 6 6 O 1.21603 * 119.99660 * 180.27455 * 5 4 3 7 7 N 1.34771 * 120.00297 * 0.27939 * 5 4 3 8 8 C 1.46501 * 119.99876 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.32957 * 35.00213 * 8 7 5 10 10 C 1.47098 * 109.32830 * 154.64757 * 8 7 5 11 11 C 1.52566 * 114.32860 * 183.05611 * 10 8 7 12 12 C 1.50872 * 109.35910 * 274.98826 * 11 10 8 13 13 C 1.53952 * 110.09881 * 91.88698 * 12 11 10 14 14 N 1.47600 * 112.13948 * 319.43822 * 13 12 11 15 15 C 1.36935 * 118.64350 * 137.86604 * 14 13 12 16 16 H 1.08000 * 119.99805 * 206.50878 * 15 14 13 17 17 C 1.38808 * 120.00414 * 26.50593 * 15 14 13 18 18 N 1.31627 * 119.99775 * 15.67192 * 17 15 14 19 19 Si 1.86800 * 120.00492 * 195.67654 * 17 15 14 20 20 H 1.48504 * 109.47104 * 89.99862 * 19 17 15 21 21 H 1.48500 * 109.47385 * 209.99897 * 19 17 15 22 22 H 1.48499 * 109.46894 * 330.00060 * 19 17 15 23 23 C 1.44662 * 122.54361 * 317.85411 * 14 13 12 24 24 C 1.46673 * 118.98341 * 0.52950 * 4 3 2 25 25 O 1.21849 * 120.78747 * 179.75150 * 24 4 3 26 26 N 1.35157 * 118.42858 * 359.72603 * 24 4 3 27 27 H 0.97005 * 120.36627 * 179.97438 * 26 24 4 28 28 C 1.34894 * 119.26446 * 0.02562 * 26 24 4 29 29 C 1.50699 * 119.49645 * 179.97438 * 28 26 24 30 30 H 1.08994 * 109.47103 * 269.72815 * 1 2 3 31 31 H 1.08994 * 109.47254 * 149.72562 * 1 2 3 32 32 H 1.09001 * 109.46952 * 29.72606 * 1 2 3 33 33 H 0.96997 * 120.00445 * 359.97438 * 7 5 4 34 34 H 1.08998 * 108.51548 * 304.31633 * 10 8 7 35 35 H 1.08998 * 108.51134 * 61.96579 * 10 8 7 36 36 H 1.09008 * 109.48769 * 34.95261 * 11 10 8 37 37 H 1.09002 * 109.48941 * 155.01522 * 11 10 8 38 38 H 1.09002 * 109.37045 * 212.07814 * 12 11 10 39 39 H 1.09005 * 109.36777 * 331.82435 * 12 11 10 40 40 H 1.09010 * 108.94437 * 80.12088 * 13 12 11 41 41 H 1.09000 * 108.95008 * 198.75220 * 13 12 11 42 42 H 0.96991 * 119.99951 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.61583 * 330.84561 * 23 14 13 44 44 H 1.08997 * 109.32929 * 210.89817 * 23 14 13 45 45 H 1.09003 * 109.47463 * 270.01582 * 29 28 26 46 46 H 1.08998 * 109.47358 * 30.02308 * 29 28 26 47 47 H 1.09009 * 109.46915 * 150.01920 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4739 1.1880 0.0048 5 6 4.1900 2.4775 0.0105 6 8 5.4059 2.4977 0.0099 7 7 3.4969 3.6333 0.0166 8 6 4.2082 4.9140 0.0228 9 1 5.1197 4.8233 -0.5679 10 6 3.3478 5.9517 -0.5660 11 6 4.0070 7.3226 -0.6835 12 6 3.8515 8.0657 0.6203 13 6 5.0679 7.8036 1.5269 14 7 5.5078 6.3957 1.4743 15 6 6.8497 6.1289 1.4187 16 1 7.2000 5.2139 0.9643 17 6 7.7599 7.0345 1.9462 18 7 7.3481 7.9823 2.7614 19 14 9.5692 6.9083 1.4991 20 1 9.8378 7.7236 0.2873 21 1 10.3941 7.4112 2.6269 22 1 9.9142 5.4896 1.2276 23 6 4.5765 5.2887 1.4796 24 6 4.2171 -0.0764 -0.0017 25 8 5.4356 -0.0838 -0.0021 26 7 3.5184 -1.2334 -0.0068 27 1 3.9813 -2.0858 -0.0115 28 6 2.1702 -1.1895 -0.0062 29 6 1.3859 -2.4764 -0.0124 30 1 -0.3633 -0.0049 1.0276 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8924 -0.5096 33 1 2.5270 3.6173 0.0168 34 1 3.0453 5.6266 -1.5615 35 1 2.4546 6.0515 0.0505 36 1 5.0667 7.1986 -0.9073 37 1 3.5298 7.8882 -1.4838 38 1 3.7734 9.1343 0.4202 39 1 2.9471 7.7253 1.1247 40 1 5.8909 8.4437 1.2087 41 1 4.8039 8.0538 2.5544 42 1 7.9840 8.6153 3.1297 43 1 3.6738 5.5725 2.0206 44 1 5.0381 4.4312 1.9692 45 1 1.1967 -2.7817 -1.0415 46 1 1.9567 -3.2522 0.4978 47 1 0.4368 -2.3259 0.5022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034256898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:35 Heat of formation + Delta-G solvation = -6.436418 kcal Electronic energy + Delta-G solvation = -29568.130687 eV Core-core repulsion = 25559.116511 eV Total energy + Delta-G solvation = -4009.014176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.94548 -39.38577 -38.14287 -37.46215 -35.63129 -34.39982 -33.46945 -33.03837 -30.82799 -30.19642 -29.26120 -27.05349 -25.84644 -24.91499 -24.28747 -23.46426 -22.58926 -20.57528 -20.02731 -19.11020 -18.85319 -18.48253 -16.86515 -16.50481 -16.41225 -16.10865 -15.60529 -14.90497 -14.56425 -14.40467 -14.35330 -14.09025 -13.91264 -13.65083 -13.56557 -13.37876 -13.30850 -12.99351 -12.53838 -12.41474 -12.32742 -12.06111 -11.98226 -11.61748 -11.41903 -11.37685 -10.93962 -10.81200 -10.66043 -10.45621 -10.05395 -10.00619 -9.99802 -9.61543 -9.53253 -9.45542 -9.32056 -8.66860 -8.25570 -8.16588 -6.51618 -5.63302 -3.06164 -0.07691 1.44828 2.15387 2.75122 3.33196 3.51472 3.57285 3.63400 3.65591 3.73169 3.96023 4.03813 4.32574 4.66887 4.70317 4.86115 4.94758 5.09613 5.17581 5.26731 5.36857 5.47733 5.52486 5.56630 5.64367 5.73860 5.88163 6.03820 6.08348 6.14225 6.14855 6.27196 6.42468 6.49984 6.69534 6.74070 6.84794 6.88274 6.94183 7.04534 7.22698 7.27118 7.55947 7.57088 7.83352 7.97881 8.04891 8.62916 8.66416 9.40340 10.05251 10.49174 11.44428 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003176 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.610100 B = 8813.102824 C =10120.203213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.031 4.031 3 N -0.356 5.356 4 C 0.021 3.979 5 C 0.571 3.429 6 O -0.495 6.495 7 N -0.703 5.703 8 C 0.115 3.885 9 H 0.089 0.911 10 C -0.111 4.111 11 C -0.100 4.100 12 C -0.143 4.143 13 C 0.176 3.824 14 N -0.584 5.584 15 C -0.252 4.252 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.908 5.908 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.157 3.843 24 C 0.494 3.506 25 O -0.477 6.477 26 N -0.588 5.588 27 H 0.420 0.580 28 C 0.148 3.852 29 C -0.131 4.131 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.399 0.601 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.251 0.749 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.248 -18.810 -7.228 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.157 4.157 3 N -0.074 5.074 4 C -0.148 4.148 5 C 0.353 3.647 6 O -0.366 6.366 7 N -0.355 5.355 8 C 0.009 3.991 9 H 0.107 0.893 10 C -0.149 4.149 11 C -0.139 4.139 12 C -0.182 4.182 13 C 0.051 3.949 14 N -0.304 5.304 15 C -0.382 4.382 16 H 0.089 0.911 17 C -0.195 4.195 18 N -0.553 5.553 19 Si 0.729 3.271 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.202 1.202 23 C 0.027 3.973 24 C 0.285 3.715 25 O -0.347 6.347 26 N -0.224 5.224 27 H 0.260 0.740 28 C 0.033 3.967 29 C -0.188 4.188 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.007 -17.839 -7.116 27.021 hybrid contribution 1.007 -1.284 -0.176 1.641 sum -18.000 -19.123 -7.292 27.256 Atomic orbital electron populations 1.20533 0.87063 1.03627 1.03039 1.20105 0.97814 0.85679 1.12136 1.67526 1.08491 1.29469 1.01886 1.24172 0.88728 0.94260 1.07658 1.17026 0.86744 0.82068 0.78838 1.90963 1.12111 1.86140 1.47424 1.45926 1.10200 1.05352 1.74062 1.21305 0.95455 0.80040 1.02344 0.89260 1.20569 0.98781 0.95899 0.99679 1.20828 1.02118 0.93751 0.97158 1.22082 1.00600 0.98727 0.96823 1.21057 0.93371 0.85304 0.95170 1.43614 1.02193 0.99702 1.84931 1.19369 0.81811 1.05732 1.31258 0.91131 1.25002 0.97936 0.99369 0.97155 1.70086 1.33454 1.19710 1.32054 0.86313 0.85386 0.77959 0.77412 1.21538 1.21942 1.20228 1.20942 0.92990 0.91781 0.91554 1.19146 0.88514 0.83979 0.79882 1.91091 1.11378 1.85135 1.47082 1.43756 1.06344 1.12001 1.60320 0.74001 1.21496 0.83580 0.98903 0.92746 1.21232 1.00943 0.91886 1.04758 0.90744 0.90821 0.90141 0.76613 0.93342 0.92730 0.90452 0.93419 0.92968 0.93670 0.90660 0.95791 0.93889 0.94928 0.93298 0.88527 0.89951 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.25 36.00 0.33 -0.07 16 2 C -0.03 -0.26 6.70 -83.18 -0.56 -0.82 16 3 N -0.36 -4.30 9.57 -4.85 -0.05 -4.34 16 4 C 0.02 0.33 6.96 -80.46 -0.56 -0.23 16 5 C 0.57 10.89 7.75 -12.49 -0.10 10.79 16 6 O -0.50 -11.91 15.16 -15.20 -0.23 -12.14 16 7 N -0.70 -11.85 5.05 -56.67 -0.29 -12.13 16 8 C 0.11 2.22 2.34 -69.78 -0.16 2.06 16 9 H 0.09 2.05 7.57 -51.93 -0.39 1.65 16 10 C -0.11 -1.83 4.55 -29.79 -0.14 -1.96 16 11 C -0.10 -1.78 5.51 -28.02 -0.15 -1.93 16 12 C -0.14 -2.71 5.70 -27.30 -0.16 -2.87 16 13 C 0.18 4.28 4.66 -2.94 -0.01 4.27 16 14 N -0.58 -15.12 2.27 -172.02 -0.39 -15.51 16 15 C -0.25 -7.34 9.45 -15.06 -0.14 -7.48 16 16 H 0.07 2.15 7.88 -52.49 -0.41 1.73 16 17 C 0.00 0.09 4.87 -17.43 -0.08 0.01 16 18 N -0.91 -27.25 11.01 55.49 0.61 -26.64 16 19 Si 0.90 23.28 29.58 -169.99 -5.03 18.25 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.16 3.56 5.24 -4.04 -0.02 3.54 16 24 C 0.49 7.39 7.93 -12.68 -0.10 7.29 16 25 O -0.48 -9.33 16.40 -15.42 -0.25 -9.58 16 26 N -0.59 -5.25 5.29 -9.45 -0.05 -5.30 16 27 H 0.42 2.49 8.81 -40.82 -0.36 2.13 16 28 C 0.15 0.97 6.78 -81.98 -0.56 0.41 16 29 C -0.13 -0.21 9.18 36.01 0.33 0.12 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.15 6.53 -51.93 -0.34 -0.19 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.40 5.55 7.94 -40.82 -0.32 5.22 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.82 7.34 -51.93 -0.38 0.44 16 36 H 0.08 1.61 7.48 -51.92 -0.39 1.22 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.80 7.31 -51.93 -0.38 0.42 16 40 H 0.08 2.04 6.33 -51.92 -0.33 1.71 16 41 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 44 H 0.05 1.23 7.97 -51.93 -0.41 0.82 16 45 H 0.10 0.04 8.14 -51.93 -0.42 -0.39 16 46 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 47 H 0.10 0.04 6.54 -51.92 -0.34 -0.30 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -38.01 375.63 -9.08 -47.09 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.99 Total: 1.51 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -2.08 Total: 13.12 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.16 Total: -63.91 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.48 Total: -21.72 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.03 Total: 18.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.01 -9.08 -47.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034256898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.651 kcal (2) G-P(sol) polarization free energy of solvation -38.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds