Wall clock time and date at job start Tue Mar 31 2020 17:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32167 * 119.14378 * 2 1 4 4 C 1.32372 * 120.60245 * 179.75834 * 3 2 1 5 5 C 1.47498 * 120.50448 * 180.25814 * 4 3 2 6 6 O 1.21603 * 119.99660 * 180.27455 * 5 4 3 7 7 N 1.34771 * 120.00297 * 0.27939 * 5 4 3 8 8 C 1.46501 * 119.99876 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.32957 * 35.00213 * 8 7 5 10 10 C 1.47098 * 109.32830 * 154.64757 * 8 7 5 11 11 C 1.52566 * 114.32860 * 183.05611 * 10 8 7 12 12 C 1.50872 * 109.35910 * 274.98826 * 11 10 8 13 13 C 1.53952 * 110.09881 * 91.88698 * 12 11 10 14 14 N 1.47600 * 112.13948 * 319.43822 * 13 12 11 15 15 C 1.36935 * 118.64350 * 137.86604 * 14 13 12 16 16 H 1.08000 * 119.99805 * 206.50878 * 15 14 13 17 17 C 1.38808 * 120.00414 * 26.50593 * 15 14 13 18 18 N 1.31627 * 119.99775 * 15.67192 * 17 15 14 19 19 Si 1.86800 * 120.00492 * 195.67654 * 17 15 14 20 20 H 1.48504 * 109.47104 * 89.99862 * 19 17 15 21 21 H 1.48500 * 109.47385 * 209.99897 * 19 17 15 22 22 H 1.48499 * 109.46894 * 330.00060 * 19 17 15 23 23 C 1.44662 * 122.54361 * 317.85411 * 14 13 12 24 24 C 1.46673 * 118.98341 * 0.52950 * 4 3 2 25 25 O 1.21849 * 120.78747 * 179.75150 * 24 4 3 26 26 N 1.35157 * 118.42858 * 359.72603 * 24 4 3 27 27 H 0.97005 * 120.36627 * 179.97438 * 26 24 4 28 28 C 1.34894 * 119.26446 * 0.02562 * 26 24 4 29 29 C 1.50699 * 119.49645 * 179.97438 * 28 26 24 30 30 H 1.08994 * 109.47103 * 269.72815 * 1 2 3 31 31 H 1.08994 * 109.47254 * 149.72562 * 1 2 3 32 32 H 1.09001 * 109.46952 * 29.72606 * 1 2 3 33 33 H 0.96997 * 120.00445 * 359.97438 * 7 5 4 34 34 H 1.08998 * 108.51548 * 304.31633 * 10 8 7 35 35 H 1.08998 * 108.51134 * 61.96579 * 10 8 7 36 36 H 1.09008 * 109.48769 * 34.95261 * 11 10 8 37 37 H 1.09002 * 109.48941 * 155.01522 * 11 10 8 38 38 H 1.09002 * 109.37045 * 212.07814 * 12 11 10 39 39 H 1.09005 * 109.36777 * 331.82435 * 12 11 10 40 40 H 1.09010 * 108.94437 * 80.12088 * 13 12 11 41 41 H 1.09000 * 108.95008 * 198.75220 * 13 12 11 42 42 H 0.96991 * 119.99951 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.61583 * 330.84561 * 23 14 13 44 44 H 1.08997 * 109.32929 * 210.89817 * 23 14 13 45 45 H 1.09003 * 109.47463 * 270.01582 * 29 28 26 46 46 H 1.08998 * 109.47358 * 30.02308 * 29 28 26 47 47 H 1.09009 * 109.46915 * 150.01920 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4739 1.1880 0.0048 5 6 4.1900 2.4775 0.0105 6 8 5.4059 2.4977 0.0099 7 7 3.4969 3.6333 0.0166 8 6 4.2082 4.9140 0.0228 9 1 5.1197 4.8233 -0.5679 10 6 3.3478 5.9517 -0.5660 11 6 4.0070 7.3226 -0.6835 12 6 3.8515 8.0657 0.6203 13 6 5.0679 7.8036 1.5269 14 7 5.5078 6.3957 1.4743 15 6 6.8497 6.1289 1.4187 16 1 7.2000 5.2139 0.9643 17 6 7.7599 7.0345 1.9462 18 7 7.3481 7.9823 2.7614 19 14 9.5692 6.9083 1.4991 20 1 9.8378 7.7236 0.2873 21 1 10.3941 7.4112 2.6269 22 1 9.9142 5.4896 1.2276 23 6 4.5765 5.2887 1.4796 24 6 4.2171 -0.0764 -0.0017 25 8 5.4356 -0.0838 -0.0021 26 7 3.5184 -1.2334 -0.0068 27 1 3.9813 -2.0858 -0.0115 28 6 2.1702 -1.1895 -0.0062 29 6 1.3859 -2.4764 -0.0124 30 1 -0.3633 -0.0049 1.0276 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8924 -0.5096 33 1 2.5270 3.6173 0.0168 34 1 3.0453 5.6266 -1.5615 35 1 2.4546 6.0515 0.0505 36 1 5.0667 7.1986 -0.9073 37 1 3.5298 7.8882 -1.4838 38 1 3.7734 9.1343 0.4202 39 1 2.9471 7.7253 1.1247 40 1 5.8909 8.4437 1.2087 41 1 4.8039 8.0538 2.5544 42 1 7.9840 8.6153 3.1297 43 1 3.6738 5.5725 2.0206 44 1 5.0381 4.4312 1.9692 45 1 1.1967 -2.7817 -1.0415 46 1 1.9567 -3.2522 0.4978 47 1 0.4368 -2.3259 0.5022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034256898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:34 Heat of formation + Delta-G solvation = -36.145416 kcal Electronic energy + Delta-G solvation = -29569.418966 eV Core-core repulsion = 25559.116511 eV Total energy + Delta-G solvation = -4010.302455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.88128 -40.87413 -39.30945 -39.00182 -36.58589 -36.20108 -34.81614 -34.12613 -32.88639 -31.67828 -29.89919 -28.09570 -27.68800 -25.92734 -25.58771 -25.08946 -23.95240 -21.83984 -21.59988 -20.87590 -19.86033 -19.47206 -18.61014 -17.99845 -17.47826 -17.34053 -16.99820 -16.52613 -16.43105 -15.79590 -15.45911 -15.28459 -15.00777 -14.95964 -14.74045 -14.30333 -14.12035 -14.04838 -13.91724 -13.85383 -13.80268 -13.12628 -13.02380 -12.84557 -12.76336 -12.59018 -12.49414 -12.41128 -12.37015 -12.31563 -12.05811 -11.65939 -11.46788 -11.38779 -11.32391 -11.13464 -10.56593 -10.49843 -10.15177 -9.08743 -8.64428 -7.89258 -5.34809 -0.96662 0.50782 1.24184 1.39429 1.39957 1.51645 1.58216 2.14268 2.49413 2.56668 2.93354 3.01382 3.22643 3.41710 3.70787 3.76041 3.90100 3.95582 4.11968 4.27629 4.41045 4.51630 4.59382 4.66806 4.70367 4.72222 4.76645 4.91775 4.95733 5.00645 5.05240 5.07767 5.10901 5.21591 5.23215 5.25287 5.29577 5.37377 5.43850 5.53163 5.62553 5.65638 5.71931 5.83671 6.34079 6.39759 6.56392 6.69255 7.17146 7.30423 7.93099 8.27766 9.14904 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003176 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.610100 B = 8813.102824 C =10120.203213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.049 4.049 3 N -0.335 5.335 4 C -0.061 4.061 5 C 0.569 3.431 6 O -0.566 6.566 7 N -0.690 5.690 8 C 0.134 3.866 9 H 0.043 0.957 10 C -0.107 4.107 11 C -0.097 4.097 12 C -0.130 4.130 13 C 0.184 3.816 14 N -0.596 5.596 15 C -0.263 4.263 16 H 0.042 0.958 17 C -0.041 4.041 18 N -0.929 5.929 19 Si 0.957 3.043 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.286 1.286 23 C 0.160 3.840 24 C 0.487 3.513 25 O -0.545 6.545 26 N -0.564 5.564 27 H 0.438 0.562 28 C 0.199 3.801 29 C -0.134 4.134 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.417 0.583 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.041 0.959 41 H -0.003 1.003 42 H 0.251 0.749 43 H 0.053 0.947 44 H 0.007 0.993 45 H 0.129 0.871 46 H 0.104 0.896 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.364 -21.455 -8.430 34.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.180 4.180 3 N -0.053 5.053 4 C -0.221 4.221 5 C 0.355 3.645 6 O -0.443 6.443 7 N -0.342 5.342 8 C 0.027 3.973 9 H 0.061 0.939 10 C -0.145 4.145 11 C -0.135 4.135 12 C -0.169 4.169 13 C 0.059 3.941 14 N -0.318 5.318 15 C -0.394 4.394 16 H 0.060 0.940 17 C -0.236 4.236 18 N -0.575 5.575 19 Si 0.786 3.214 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.032 3.968 24 C 0.282 3.718 25 O -0.422 6.422 26 N -0.199 5.199 27 H 0.281 0.719 28 C 0.080 3.920 29 C -0.190 4.190 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.025 0.975 45 H 0.147 0.853 46 H 0.123 0.877 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -24.170 -20.465 -8.330 32.748 hybrid contribution 2.261 -0.864 0.224 2.431 sum -21.909 -21.329 -8.105 31.633 Atomic orbital electron populations 1.20735 0.83462 1.05391 1.04474 1.21068 0.99951 0.85127 1.11865 1.67416 1.06843 1.31834 0.99246 1.23074 0.89688 0.92445 1.16929 1.17616 0.86220 0.83777 0.76933 1.90905 1.15207 1.87377 1.50830 1.45663 1.10756 1.04125 1.73685 1.20782 0.95092 0.82354 0.99040 0.93865 1.20518 0.98546 0.94002 1.01425 1.20813 1.00261 0.94851 0.97616 1.21944 0.98207 1.00482 0.96229 1.20900 0.94631 0.83600 0.94954 1.43741 1.01586 1.01145 1.85365 1.19328 0.83996 1.05027 1.31033 0.93978 1.25612 1.01441 0.99279 0.97309 1.70207 1.34416 1.20153 1.32721 0.85422 0.81077 0.77361 0.77559 1.20404 1.21082 1.21143 1.20981 0.92597 0.89428 0.93829 1.19139 0.87851 0.85318 0.79523 1.91042 1.13963 1.86157 1.51033 1.43714 1.07556 1.11342 1.57264 0.71900 1.22599 0.82352 1.01263 0.85775 1.21643 1.01323 0.88815 1.07260 0.89407 0.86910 0.90668 0.74535 0.90675 0.89855 0.94405 0.89491 0.90736 0.91435 0.94080 0.98531 0.93962 0.92839 0.97459 0.85344 0.87742 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 9.25 71.24 0.66 0.34 16 2 C -0.05 -0.64 6.70 42.03 0.28 -0.36 16 3 N -0.34 -7.75 9.57 -169.24 -1.62 -9.37 16 4 C -0.06 -1.98 6.96 43.71 0.30 -1.68 16 5 C 0.57 23.89 7.75 86.69 0.67 24.56 16 6 O -0.57 -30.84 15.16 15.53 0.24 -30.60 16 7 N -0.69 -24.54 5.05 -451.48 -2.28 -26.82 16 8 C 0.13 5.51 2.34 43.79 0.10 5.61 16 9 H 0.04 2.18 7.57 -2.39 -0.02 2.17 16 10 C -0.11 -3.38 4.55 28.62 0.13 -3.25 16 11 C -0.10 -3.34 5.51 29.76 0.16 -3.17 16 12 C -0.13 -4.76 5.70 30.22 0.17 -4.59 16 13 C 0.18 9.31 4.66 86.49 0.40 9.72 16 14 N -0.60 -32.98 2.27 -698.16 -1.59 -34.57 16 15 C -0.26 -16.56 9.45 84.03 0.79 -15.77 16 16 H 0.04 2.84 7.88 -2.91 -0.02 2.82 16 17 C -0.04 -2.52 4.87 84.86 0.41 -2.10 16 18 N -0.93 -58.33 11.01 21.65 0.24 -58.09 16 19 Si 0.96 50.47 29.58 68.60 2.03 52.50 16 20 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.28 -14.56 7.11 99.48 0.71 -13.86 16 22 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 23 C 0.16 7.75 5.24 87.36 0.46 8.21 16 24 C 0.49 15.42 7.93 86.39 0.68 16.11 16 25 O -0.54 -23.56 16.40 14.75 0.24 -23.31 16 26 N -0.56 -8.98 5.29 -301.76 -1.60 -10.58 16 27 H 0.44 4.10 8.81 -92.70 -0.82 3.29 16 28 C 0.20 1.70 6.78 41.61 0.28 1.98 16 29 C -0.13 0.56 9.18 71.24 0.65 1.21 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.11 -0.41 6.53 -2.39 -0.02 -0.43 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.42 11.53 7.94 -92.71 -0.74 10.80 16 34 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.21 7.34 -2.39 -0.02 2.19 16 36 H 0.04 1.61 7.48 -2.38 -0.02 1.59 16 37 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.07 2.20 7.31 -2.38 -0.02 2.18 16 40 H 0.04 2.33 6.33 -2.38 -0.02 2.32 16 41 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 42 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 44 H 0.01 0.39 7.97 -2.39 -0.02 0.37 16 45 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16 46 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.13 -1.02 6.54 -2.38 -0.02 -1.04 16 Total: -1.00 -98.82 375.63 1.30 -97.52 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -0.54 Total: 6.51 kcal Atomic # 6 Polarization: 30.64 SS G_CDS: 6.18 Total: 36.81 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.84 Total: -139.42 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: 0.48 Total: -53.92 kcal Atomic # 14 Polarization: 50.47 SS G_CDS: 2.03 Total: 52.50 kcal Total: -98.82 1.30 -97.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034256898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.372 kcal (2) G-P(sol) polarization free energy of solvation -98.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds