Wall clock time and date at job start Tue Mar 31 2020 17:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32166 * 119.14315 * 2 1 4 4 C 1.32364 * 120.60840 * 180.02562 * 3 2 1 5 5 C 1.47491 * 120.51094 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00272 * 152.16883 * 5 4 3 7 7 N 1.34781 * 120.00433 * 332.16881 * 5 4 3 8 8 C 1.46924 * 120.62395 * 1.90982 * 7 5 4 9 9 C 1.53194 * 108.77230 * 233.58284 * 8 7 5 10 10 C 1.53044 * 109.31565 * 305.36761 * 9 8 7 11 11 H 1.08997 * 109.46111 * 301.34367 * 10 9 8 12 12 N 1.46496 * 109.45927 * 181.37257 * 10 9 8 13 13 C 1.36931 * 120.00342 * 85.00357 * 12 10 9 14 14 H 1.08006 * 120.00208 * 359.97438 * 13 12 10 15 15 C 1.38817 * 120.00421 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99573 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47686 * 89.99532 * 17 15 13 19 19 H 1.48504 * 109.46936 * 209.99558 * 17 15 13 20 20 H 1.48505 * 109.47266 * 329.99240 * 17 15 13 21 21 C 1.53035 * 109.53524 * 61.36506 * 10 9 8 22 22 H 1.09001 * 109.50328 * 58.62008 * 21 10 9 23 23 C 1.53006 * 109.49618 * 178.68784 * 21 10 9 24 24 C 1.46921 * 120.63221 * 181.62728 * 7 5 4 25 25 C 1.46678 * 118.97791 * 0.02562 * 4 3 2 26 26 O 1.21855 * 120.78080 * 179.97438 * 25 4 3 27 27 N 1.35154 * 118.43322 * 0.02562 * 25 4 3 28 28 H 0.97001 * 120.36660 * 179.97438 * 27 25 4 29 29 C 1.34889 * 119.26289 * 359.97438 * 27 25 4 30 30 C 1.50703 * 119.50187 * 179.72478 * 29 27 25 31 31 H 1.09000 * 109.46731 * 269.97503 * 1 2 3 32 32 H 1.08998 * 109.47377 * 29.97377 * 1 2 3 33 33 H 1.09000 * 109.47286 * 149.97550 * 1 2 3 34 34 H 1.08999 * 109.59221 * 353.37007 * 8 7 5 35 35 H 1.09003 * 109.58687 * 113.80268 * 8 7 5 36 36 H 1.09006 * 109.49729 * 65.31853 * 9 8 7 37 37 H 1.09006 * 109.50331 * 185.41537 * 9 8 7 38 38 H 0.97007 * 119.99664 * 264.99572 * 12 10 9 39 39 H 0.97000 * 119.99568 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47169 * 59.99769 * 23 21 10 41 41 H 1.09002 * 109.47102 * 180.02562 * 23 21 10 42 42 H 1.08999 * 109.46754 * 299.99749 * 23 21 10 43 43 H 1.08997 * 109.58713 * 246.19978 * 24 7 5 44 44 H 1.08999 * 109.58752 * 6.62889 * 24 7 5 45 45 H 1.09011 * 109.46460 * 0.02562 * 30 29 27 46 46 H 1.08999 * 109.47373 * 119.99931 * 30 29 27 47 47 H 1.08995 * 109.47296 * 240.00397 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4738 1.1882 -0.0005 5 6 4.1899 2.4776 0.0001 6 8 5.2995 2.5567 0.4913 7 7 3.6146 3.5683 -0.5439 8 6 2.2580 3.4984 -1.1037 9 6 2.2906 4.0241 -2.5423 10 6 2.9044 5.4260 -2.5551 11 1 2.3158 6.0860 -1.9179 12 7 2.9071 5.9450 -3.9250 13 6 1.7950 6.5701 -4.4226 14 1 0.9157 6.6801 -3.8053 15 6 1.7974 7.0615 -5.7209 16 7 2.8688 6.9270 -6.4734 17 14 0.2806 7.9148 -6.3994 18 1 0.3613 9.3697 -6.1132 19 1 0.2082 7.7024 -7.8674 20 1 -0.9337 7.3506 -5.7572 21 6 4.3411 5.3604 -2.0322 22 1 4.9243 4.6817 -2.6546 23 6 4.9648 6.7569 -2.0761 24 6 4.3296 4.8512 -0.5827 25 6 4.2170 -0.0764 -0.0016 26 8 5.4356 -0.0835 -0.0026 27 7 3.5184 -1.2334 -0.0027 28 1 3.9814 -2.0857 -0.0038 29 6 2.1703 -1.1896 -0.0021 30 6 1.3859 -2.4764 -0.0095 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5142 34 1 1.9141 2.4640 -1.1005 35 1 1.5838 4.1117 -0.5058 36 1 2.8929 3.3576 -3.1597 37 1 1.2754 4.0679 -2.9369 38 1 3.6968 5.8460 -4.4796 39 1 2.8704 7.2700 -7.3807 40 1 4.3820 7.4348 -1.4525 41 1 5.9882 6.7096 -1.7039 42 1 4.9686 7.1209 -3.1035 43 1 3.8210 5.5725 0.0568 44 1 5.3531 4.7097 -0.2355 45 1 2.0745 -3.3215 -0.0142 46 1 0.7583 -2.5245 0.8803 47 1 0.7579 -2.5140 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036084915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:45 Heat of formation + Delta-G solvation = -7.244464 kcal Electronic energy + Delta-G solvation = -29709.514339 eV Core-core repulsion = 25700.465124 eV Total energy + Delta-G solvation = -4009.049216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09706 -39.79363 -38.29672 -37.42073 -35.87220 -34.44612 -33.47885 -32.61187 -31.36085 -29.71005 -29.17180 -27.40753 -26.14207 -25.13690 -24.76448 -23.27846 -22.49661 -21.54135 -20.30207 -19.33659 -18.98541 -18.23170 -17.05009 -16.92618 -16.51965 -15.92990 -15.76942 -14.91469 -14.83508 -14.46015 -14.42371 -14.08470 -13.93254 -13.72782 -13.58354 -13.46244 -13.34407 -13.20302 -12.75380 -12.41741 -12.40007 -12.33092 -12.05802 -11.85164 -11.64294 -11.47521 -11.14579 -11.00831 -10.88447 -10.74019 -10.47441 -10.34694 -10.17283 -10.14362 -9.70035 -9.55310 -9.29306 -8.80849 -8.43901 -8.20881 -6.90482 -5.73458 -3.01469 -0.13772 1.34911 2.04951 2.59087 3.06251 3.38107 3.44546 3.49640 3.51359 3.66498 3.85880 3.94080 4.26071 4.61104 4.65789 4.70016 4.86729 5.08918 5.10225 5.26692 5.29763 5.34442 5.44709 5.45569 5.55765 5.66789 5.72052 5.78553 5.89082 5.92569 5.99414 6.03804 6.13891 6.17799 6.33300 6.44795 6.50477 6.52504 6.64374 6.76097 6.91012 7.01333 7.15451 7.18549 7.44865 7.60338 7.72563 8.30077 8.45004 9.56161 10.14959 10.50010 11.49240 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003207 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.011328 B = 8729.164154 C =10017.911620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.034 4.034 3 N -0.341 5.341 4 C 0.014 3.986 5 C 0.582 3.418 6 O -0.521 6.521 7 N -0.585 5.585 8 C 0.089 3.911 9 C -0.152 4.152 10 C 0.183 3.817 11 H 0.048 0.952 12 N -0.721 5.721 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.014 4.014 16 N -0.933 5.933 17 Si 0.904 3.096 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.282 1.282 21 C -0.110 4.110 22 H 0.069 0.931 23 C -0.135 4.135 24 C 0.121 3.879 25 C 0.499 3.501 26 O -0.488 6.488 27 N -0.586 5.586 28 H 0.421 0.579 29 C 0.151 3.849 30 C -0.127 4.127 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -19.890 15.617 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.160 4.160 3 N -0.059 5.059 4 C -0.154 4.154 5 C 0.367 3.633 6 O -0.396 6.396 7 N -0.318 5.318 8 C -0.034 4.034 9 C -0.193 4.193 10 C 0.073 3.927 11 H 0.066 0.934 12 N -0.361 5.361 13 C -0.366 4.366 14 H 0.088 0.912 15 C -0.210 4.210 16 N -0.582 5.582 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.130 4.130 22 H 0.088 0.912 23 C -0.193 4.193 24 C -0.001 4.001 25 C 0.291 3.709 26 O -0.360 6.360 27 N -0.221 5.221 28 H 0.261 0.739 29 C 0.036 3.964 30 C -0.184 4.184 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.069 -18.959 15.834 25.216 hybrid contribution -0.094 -0.761 -0.809 1.115 sum -5.163 -19.720 15.025 25.324 Atomic orbital electron populations 1.20555 0.86742 1.04029 1.03088 1.20275 0.98106 0.85736 1.11847 1.67723 1.08225 1.28356 1.01561 1.23910 0.88932 0.93929 1.08607 1.17044 0.84812 0.81874 0.79539 1.90840 1.18749 1.84079 1.45920 1.47951 1.17404 1.09047 1.57349 1.22597 0.81602 1.04458 0.94725 1.22703 1.02526 0.99966 0.94146 1.20220 0.92260 0.92050 0.88166 0.93378 1.42422 1.16095 1.68065 1.09560 1.19228 0.92844 1.28622 0.95910 0.91236 1.24723 0.97409 1.01973 0.96910 1.69664 1.27846 1.51725 1.08920 0.86228 0.82537 0.79527 0.78119 1.21816 1.21924 1.20825 1.21832 0.98710 0.97655 0.94813 0.91226 1.21657 0.98696 0.95475 1.03510 1.21869 0.98014 0.82953 0.97311 1.19009 0.88367 0.83913 0.79616 1.91049 1.11506 1.85372 1.48097 1.43720 1.06386 1.11924 1.60119 0.73868 1.21519 0.83461 0.98981 0.92471 1.21207 1.00491 0.91349 1.05401 0.90691 0.89857 0.90681 0.86864 0.91449 0.92661 0.90731 0.78270 0.93595 0.93035 0.93793 0.90783 0.91220 0.89243 0.90367 0.88133 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 9.66 36.01 0.35 -0.10 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.84 16 3 N -0.34 -4.10 6.66 -4.85 -0.03 -4.13 16 4 C 0.01 0.21 6.52 -80.46 -0.52 -0.32 16 5 C 0.58 10.26 7.52 -12.49 -0.09 10.16 16 6 O -0.52 -10.79 15.38 -12.17 -0.19 -10.98 16 7 N -0.59 -9.54 2.97 -173.74 -0.52 -10.06 16 8 C 0.09 1.33 6.01 -3.71 -0.02 1.31 16 9 C -0.15 -2.72 5.66 -26.61 -0.15 -2.87 16 10 C 0.18 3.61 2.19 -67.89 -0.15 3.46 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 N -0.72 -17.71 4.41 -53.39 -0.24 -17.94 16 13 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 17 Si 0.90 22.17 29.55 -169.99 -5.02 17.14 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.11 -1.94 2.47 -90.27 -0.22 -2.17 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 C -0.14 -2.32 9.03 37.16 0.34 -1.98 16 24 C 0.12 1.94 5.74 -3.49 -0.02 1.92 16 25 C 0.50 6.99 7.90 -12.68 -0.10 6.89 16 26 O -0.49 -8.78 16.75 -12.39 -0.21 -8.99 16 27 N -0.59 -4.86 5.29 -9.45 -0.05 -4.91 16 28 H 0.42 2.21 8.64 -40.82 -0.35 1.86 16 29 C 0.15 0.94 6.78 -81.98 -0.56 0.39 16 30 C -0.13 -0.19 8.83 36.01 0.32 0.13 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.19 6.42 -51.93 -0.33 -0.14 16 34 H 0.11 1.59 4.16 -63.89 -0.27 1.32 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.38 10.19 7.51 -40.82 -0.31 9.88 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.47 7.36 -51.93 -0.38 1.08 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.48 7.01 -51.93 -0.36 1.12 16 45 H 0.08 0.01 7.90 -51.92 -0.41 -0.40 16 46 H 0.10 0.02 8.09 -51.93 -0.42 -0.40 16 47 H 0.10 0.05 7.36 -51.93 -0.38 -0.33 16 LS Contribution 377.77 15.07 5.69 5.69 Total: -1.00 -36.64 377.77 -8.46 -45.10 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.99 Total: 7.39 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.64 Total: 8.97 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.11 Total: -64.34 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.39 Total: -19.97 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.64 -8.46 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.859 kcal (2) G-P(sol) polarization free energy of solvation -36.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds