Wall clock time and date at job start Tue Mar 31 2020 17:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32166 * 119.14315 * 2 1 4 4 C 1.32364 * 120.60840 * 180.02562 * 3 2 1 5 5 C 1.47491 * 120.51094 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00272 * 152.16883 * 5 4 3 7 7 N 1.34781 * 120.00433 * 332.16881 * 5 4 3 8 8 C 1.46924 * 120.62395 * 1.90982 * 7 5 4 9 9 C 1.53194 * 108.77230 * 233.58284 * 8 7 5 10 10 C 1.53044 * 109.31565 * 305.36761 * 9 8 7 11 11 H 1.08997 * 109.46111 * 301.34367 * 10 9 8 12 12 N 1.46496 * 109.45927 * 181.37257 * 10 9 8 13 13 C 1.36931 * 120.00342 * 85.00357 * 12 10 9 14 14 H 1.08006 * 120.00208 * 359.97438 * 13 12 10 15 15 C 1.38817 * 120.00421 * 180.02562 * 13 12 10 16 16 N 1.31617 * 119.99573 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00111 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47686 * 89.99532 * 17 15 13 19 19 H 1.48504 * 109.46936 * 209.99558 * 17 15 13 20 20 H 1.48505 * 109.47266 * 329.99240 * 17 15 13 21 21 C 1.53035 * 109.53524 * 61.36506 * 10 9 8 22 22 H 1.09001 * 109.50328 * 58.62008 * 21 10 9 23 23 C 1.53006 * 109.49618 * 178.68784 * 21 10 9 24 24 C 1.46921 * 120.63221 * 181.62728 * 7 5 4 25 25 C 1.46678 * 118.97791 * 0.02562 * 4 3 2 26 26 O 1.21855 * 120.78080 * 179.97438 * 25 4 3 27 27 N 1.35154 * 118.43322 * 0.02562 * 25 4 3 28 28 H 0.97001 * 120.36660 * 179.97438 * 27 25 4 29 29 C 1.34889 * 119.26289 * 359.97438 * 27 25 4 30 30 C 1.50703 * 119.50187 * 179.72478 * 29 27 25 31 31 H 1.09000 * 109.46731 * 269.97503 * 1 2 3 32 32 H 1.08998 * 109.47377 * 29.97377 * 1 2 3 33 33 H 1.09000 * 109.47286 * 149.97550 * 1 2 3 34 34 H 1.08999 * 109.59221 * 353.37007 * 8 7 5 35 35 H 1.09003 * 109.58687 * 113.80268 * 8 7 5 36 36 H 1.09006 * 109.49729 * 65.31853 * 9 8 7 37 37 H 1.09006 * 109.50331 * 185.41537 * 9 8 7 38 38 H 0.97007 * 119.99664 * 264.99572 * 12 10 9 39 39 H 0.97000 * 119.99568 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47169 * 59.99769 * 23 21 10 41 41 H 1.09002 * 109.47102 * 180.02562 * 23 21 10 42 42 H 1.08999 * 109.46754 * 299.99749 * 23 21 10 43 43 H 1.08997 * 109.58713 * 246.19978 * 24 7 5 44 44 H 1.08999 * 109.58752 * 6.62889 * 24 7 5 45 45 H 1.09011 * 109.46460 * 0.02562 * 30 29 27 46 46 H 1.08999 * 109.47373 * 119.99931 * 30 29 27 47 47 H 1.08995 * 109.47296 * 240.00397 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1543 0.0000 4 6 3.4738 1.1882 -0.0005 5 6 4.1899 2.4776 0.0001 6 8 5.2995 2.5567 0.4913 7 7 3.6146 3.5683 -0.5439 8 6 2.2580 3.4984 -1.1037 9 6 2.2906 4.0241 -2.5423 10 6 2.9044 5.4260 -2.5551 11 1 2.3158 6.0860 -1.9179 12 7 2.9071 5.9450 -3.9250 13 6 1.7950 6.5701 -4.4226 14 1 0.9157 6.6801 -3.8053 15 6 1.7974 7.0615 -5.7209 16 7 2.8688 6.9270 -6.4734 17 14 0.2806 7.9148 -6.3994 18 1 0.3613 9.3697 -6.1132 19 1 0.2082 7.7024 -7.8674 20 1 -0.9337 7.3506 -5.7572 21 6 4.3411 5.3604 -2.0322 22 1 4.9243 4.6817 -2.6546 23 6 4.9648 6.7569 -2.0761 24 6 4.3296 4.8512 -0.5827 25 6 4.2170 -0.0764 -0.0016 26 8 5.4356 -0.0835 -0.0026 27 7 3.5184 -1.2334 -0.0027 28 1 3.9814 -2.0857 -0.0038 29 6 2.1703 -1.1896 -0.0021 30 6 1.3859 -2.4764 -0.0095 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8898 -0.5142 34 1 1.9141 2.4640 -1.1005 35 1 1.5838 4.1117 -0.5058 36 1 2.8929 3.3576 -3.1597 37 1 1.2754 4.0679 -2.9369 38 1 3.6968 5.8460 -4.4796 39 1 2.8704 7.2700 -7.3807 40 1 4.3820 7.4348 -1.4525 41 1 5.9882 6.7096 -1.7039 42 1 4.9686 7.1209 -3.1035 43 1 3.8210 5.5725 0.0568 44 1 5.3531 4.7097 -0.2355 45 1 2.0745 -3.3215 -0.0142 46 1 0.7583 -2.5245 0.8803 47 1 0.7579 -2.5140 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036084915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:44 Heat of formation + Delta-G solvation = -33.812459 kcal Electronic energy + Delta-G solvation = -29710.666414 eV Core-core repulsion = 25700.465124 eV Total energy + Delta-G solvation = -4010.201290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.96927 -41.08244 -39.32479 -38.83578 -36.78592 -36.06904 -34.49778 -33.92929 -33.02212 -31.05670 -30.11565 -28.31405 -27.41548 -26.54147 -25.66207 -24.64823 -23.73357 -23.05739 -21.52738 -20.67979 -19.89834 -19.23865 -18.98857 -17.99677 -17.42377 -17.09198 -16.93160 -16.70340 -16.07401 -15.71776 -15.55129 -15.19852 -15.10366 -14.99650 -14.80345 -14.41586 -14.07795 -14.06530 -13.87381 -13.80263 -13.55373 -13.20221 -13.01909 -12.85042 -12.76809 -12.71949 -12.68079 -12.47508 -12.38165 -12.25769 -12.11855 -11.88809 -11.85045 -11.61368 -11.41249 -11.15863 -10.89966 -10.27044 -9.72608 -9.07689 -8.93444 -7.88534 -5.16573 -0.96090 0.46997 1.17862 1.50104 1.51806 1.52275 1.59936 1.96714 2.41531 2.60235 2.87286 2.99234 3.41584 3.44938 3.64251 3.75521 3.79067 3.87803 4.06560 4.16981 4.36416 4.38789 4.47028 4.55257 4.62830 4.67830 4.71574 4.78135 4.85252 4.90252 4.93198 4.98049 5.03563 5.09419 5.09814 5.18601 5.22948 5.26037 5.32617 5.41578 5.51608 5.53173 5.57730 5.66137 6.27961 6.32492 6.40664 6.55599 7.04811 7.38514 8.13859 8.38587 9.35310 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.003207 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.011328 B = 8729.164154 C =10017.911620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.053 4.053 3 N -0.332 5.332 4 C -0.062 4.062 5 C 0.579 3.421 6 O -0.569 6.569 7 N -0.589 5.589 8 C 0.101 3.899 9 C -0.140 4.140 10 C 0.181 3.819 11 H 0.052 0.948 12 N -0.732 5.732 13 C -0.229 4.229 14 H 0.080 0.920 15 C -0.079 4.079 16 N -0.973 5.973 17 Si 0.970 3.030 18 H -0.290 1.290 19 H -0.301 1.301 20 H -0.265 1.265 21 C -0.101 4.101 22 H 0.047 0.953 23 C -0.128 4.128 24 C 0.126 3.874 25 C 0.493 3.507 26 O -0.547 6.547 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.199 3.801 30 C -0.130 4.130 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.369 0.631 39 H 0.248 0.752 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.130 0.870 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 -22.803 17.164 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.183 4.183 3 N -0.050 5.050 4 C -0.222 4.222 5 C 0.366 3.634 6 O -0.447 6.447 7 N -0.320 5.320 8 C -0.021 4.021 9 C -0.181 4.181 10 C 0.072 3.928 11 H 0.070 0.930 12 N -0.370 5.370 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.270 4.270 16 N -0.625 5.625 17 Si 0.800 3.200 18 H -0.218 1.218 19 H -0.228 1.228 20 H -0.190 1.190 21 C -0.121 4.121 22 H 0.066 0.934 23 C -0.186 4.186 24 C 0.003 3.997 25 C 0.288 3.712 26 O -0.425 6.425 27 N -0.198 5.198 28 H 0.282 0.718 29 C 0.080 3.920 30 C -0.187 4.187 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.201 0.799 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.119 0.881 46 H 0.148 0.852 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.909 -21.870 17.428 29.349 hybrid contribution 0.874 -0.181 -1.208 1.502 sum -8.034 -22.052 16.219 28.529 Atomic orbital electron populations 1.20731 0.83754 1.05268 1.04512 1.21088 0.99920 0.85361 1.11915 1.67504 1.07056 1.30715 0.99766 1.23107 0.89762 0.92761 1.16548 1.17505 0.84424 0.82979 0.78447 1.90780 1.20869 1.84987 1.48067 1.48015 1.17740 1.08970 1.57315 1.22582 0.81330 1.05566 0.92623 1.22505 1.01412 0.98219 0.95991 1.20419 0.93679 0.92811 0.85884 0.92959 1.42602 1.15011 1.68294 1.11133 1.19629 0.93470 1.27126 0.95903 0.90257 1.25526 1.00251 1.03697 0.97569 1.69839 1.30049 1.53645 1.08926 0.85174 0.79776 0.78238 0.76801 1.21773 1.22752 1.19015 1.21699 0.97124 0.97661 0.95586 0.93431 1.21565 1.00184 0.95065 1.01770 1.21785 0.98213 0.83617 0.96040 1.18972 0.87787 0.85080 0.79383 1.91003 1.13686 1.86282 1.51568 1.43688 1.07418 1.11394 1.57278 0.71763 1.22500 0.82426 1.01036 0.86038 1.21601 1.00872 0.88525 1.07720 0.89136 0.91057 0.87106 0.85469 0.89721 0.94711 0.91142 0.79932 0.94328 0.91903 0.91827 0.93903 0.89131 0.90006 0.88118 0.85154 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 9.66 71.24 0.69 0.23 16 2 C -0.05 -0.70 6.70 42.03 0.28 -0.42 16 3 N -0.33 -7.58 6.66 -169.25 -1.13 -8.71 16 4 C -0.06 -1.87 6.52 43.71 0.29 -1.59 16 5 C 0.58 21.57 7.52 86.68 0.65 22.23 16 6 O -0.57 -25.37 15.38 12.62 0.19 -25.18 16 7 N -0.59 -19.80 2.97 -821.85 -2.44 -22.23 16 8 C 0.10 3.00 6.01 86.36 0.52 3.52 16 9 C -0.14 -5.07 5.66 30.67 0.17 -4.90 16 10 C 0.18 7.24 2.19 45.02 0.10 7.34 16 11 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 12 N -0.73 -36.95 4.41 -322.82 -1.42 -38.37 16 13 C -0.23 -12.52 9.93 84.04 0.83 -11.68 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 15 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 16 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 17 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.10 -3.69 2.47 -10.57 -0.03 -3.71 16 22 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 23 C -0.13 -4.49 9.03 71.98 0.65 -3.84 16 24 C 0.13 4.14 5.74 86.51 0.50 4.64 16 25 C 0.49 14.11 7.90 86.39 0.68 14.80 16 26 O -0.55 -21.01 16.75 11.83 0.20 -20.81 16 27 N -0.56 -8.04 5.29 -301.75 -1.60 -9.64 16 28 H 0.44 3.34 8.64 -92.71 -0.80 2.54 16 29 C 0.20 1.60 6.78 41.61 0.28 1.89 16 30 C -0.13 0.53 8.83 71.24 0.63 1.15 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 -0.19 6.42 -2.39 -0.02 -0.20 16 34 H 0.13 3.48 4.16 -26.01 -0.11 3.37 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.37 20.59 7.51 -92.70 -0.70 19.89 16 39 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.77 7.36 -2.39 -0.02 1.75 16 43 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.08 2.85 7.01 -2.39 -0.02 2.83 16 45 H 0.10 -0.69 7.90 -2.38 -0.02 -0.71 16 46 H 0.13 -0.99 8.09 -2.39 -0.02 -1.01 16 47 H 0.13 -0.89 7.36 -2.39 -0.02 -0.91 16 Total: -1.00 -87.91 377.77 2.26 -85.65 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: -0.58 Total: 25.68 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 6.71 Total: 25.61 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.30 Total: -138.88 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: 0.39 Total: -45.99 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -87.91 2.26 -85.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.838 kcal (2) G-P(sol) polarization free energy of solvation -87.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds