Wall clock time and date at job start Tue Mar 31 2020 17:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32167 * 119.14095 * 2 1 4 4 C 1.32367 * 120.60269 * 180.02562 * 3 2 1 5 5 C 1.47501 * 120.51041 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00215 * 126.85761 * 5 4 3 7 7 N 1.34776 * 120.00049 * 306.86035 * 5 4 3 8 8 C 1.46924 * 120.63031 * 4.47547 * 7 5 4 9 9 C 1.52757 * 109.00795 * 233.58480 * 8 7 5 10 10 C 1.53038 * 109.38414 * 305.58390 * 9 8 7 11 11 H 1.09003 * 109.45242 * 181.25240 * 10 9 8 12 12 N 1.46506 * 109.46141 * 301.22280 * 10 9 8 13 13 C 1.36932 * 119.99784 * 275.06353 * 12 10 9 14 14 H 1.08001 * 120.00150 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00005 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46881 * 60.00049 * 17 15 13 19 19 H 1.48501 * 109.47523 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47293 * 300.00243 * 17 15 13 21 21 C 1.53049 * 109.53470 * 61.24157 * 10 9 8 22 22 H 1.08996 * 109.52100 * 58.60382 * 21 10 9 23 23 C 1.53000 * 109.49365 * 178.68512 * 21 10 9 24 24 C 1.46929 * 120.63125 * 184.75274 * 7 5 4 25 25 C 1.46674 * 118.98555 * 359.97438 * 4 3 2 26 26 O 1.21851 * 120.79273 * 179.97438 * 25 4 3 27 27 N 1.35160 * 118.42760 * 0.02562 * 25 4 3 28 28 H 0.96996 * 120.36457 * 179.97438 * 27 25 4 29 29 C 1.34896 * 119.26334 * 359.97438 * 27 25 4 30 30 C 1.50700 * 119.49639 * 180.27601 * 29 27 25 31 31 H 1.09001 * 109.47156 * 269.97955 * 1 2 3 32 32 H 1.09000 * 109.46751 * 29.97657 * 1 2 3 33 33 H 1.08998 * 109.47097 * 149.97858 * 1 2 3 34 34 H 1.09006 * 109.58688 * 353.41955 * 8 7 5 35 35 H 1.08998 * 109.58614 * 113.84014 * 8 7 5 36 36 H 1.09001 * 109.56586 * 185.55276 * 9 8 7 37 37 H 1.08993 * 109.38766 * 65.51324 * 9 8 7 38 38 H 0.97001 * 119.99646 * 95.06829 * 12 10 9 39 39 H 0.96991 * 120.00036 * 179.97438 * 16 15 13 40 40 H 1.09009 * 109.46631 * 179.83836 * 23 21 10 41 41 H 1.08994 * 109.47327 * 299.83286 * 23 21 10 42 42 H 1.08993 * 109.47263 * 59.84006 * 23 21 10 43 43 H 1.08999 * 109.58447 * 246.15433 * 24 7 5 44 44 H 1.08998 * 109.58737 * 6.43685 * 24 7 5 45 45 H 1.09005 * 109.46531 * 269.72073 * 30 29 27 46 46 H 1.08993 * 109.47407 * 29.71849 * 30 29 27 47 47 H 1.08997 * 109.47146 * 149.72359 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1881 -0.0005 5 6 4.1900 2.4776 -0.0011 6 8 5.0378 2.7027 0.8411 7 7 3.9048 3.4065 -0.9350 8 6 2.8167 3.1900 -1.8983 9 6 3.3616 3.3724 -3.3137 10 6 4.0372 4.7410 -3.4254 11 1 4.4069 4.8815 -4.4411 12 7 3.0664 5.7918 -3.1095 13 6 2.2322 6.2688 -4.0850 14 1 2.2895 5.8700 -5.0871 15 6 1.3119 7.2640 -3.7857 16 7 1.2417 7.7496 -2.5643 17 14 0.1733 7.9142 -5.1161 18 1 -0.6590 6.8024 -5.6420 19 1 -0.7070 8.9647 -4.5444 20 1 0.9811 8.4927 -6.2198 21 6 5.2076 4.8158 -2.4420 22 1 5.9186 4.0191 -2.6607 23 6 5.9025 6.1721 -2.5775 24 6 4.6800 4.6522 -1.0131 25 6 4.2171 -0.0763 -0.0005 26 8 5.4356 -0.0837 -0.0014 27 7 3.5184 -1.2333 -0.0005 28 1 3.9814 -2.0857 -0.0009 29 6 2.1702 -1.1895 0.0000 30 6 1.3860 -2.4764 0.0063 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 2.4254 2.1787 -1.7864 35 1 2.0213 3.9135 -1.7198 36 1 2.5429 3.3113 -4.0307 37 1 4.0895 2.5891 -3.5249 38 1 3.0148 6.1497 -2.2094 39 1 0.5990 8.4453 -2.3552 40 1 6.7342 6.2260 -1.8749 41 1 6.2778 6.2880 -3.5943 42 1 5.1909 6.9684 -2.3599 43 1 4.0395 5.4974 -0.7611 44 1 5.5162 4.6066 -0.3155 45 1 1.1921 -2.7887 -1.0199 46 1 1.9592 -3.2487 0.5190 47 1 0.4393 -2.3224 0.5242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036084916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:48 Heat of formation + Delta-G solvation = -11.941966 kcal Electronic energy + Delta-G solvation = -30141.450615 eV Core-core repulsion = 26132.197700 eV Total energy + Delta-G solvation = -4009.252914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99930 -39.76384 -38.20571 -37.53826 -35.70516 -34.15630 -33.40340 -32.66301 -31.34766 -29.55999 -29.10321 -27.39170 -26.01755 -25.03469 -24.72598 -23.44287 -22.92277 -21.57006 -20.26480 -18.92486 -18.60761 -17.90281 -17.29797 -16.86965 -16.42763 -15.95085 -15.71552 -14.85242 -14.46813 -14.37742 -14.30612 -14.24073 -13.93456 -13.69548 -13.57635 -13.47521 -13.23936 -13.21208 -12.69293 -12.45591 -12.24611 -12.17697 -11.99899 -11.75263 -11.47068 -11.38703 -11.18607 -11.08288 -10.85889 -10.72679 -10.41424 -10.34485 -10.18513 -10.08639 -9.78000 -9.49986 -9.39771 -8.87263 -8.27156 -8.09185 -6.92339 -5.73895 -3.02184 0.02020 1.42400 2.08438 2.71197 3.14959 3.32219 3.44639 3.49802 3.50569 3.79244 3.95496 4.10062 4.35947 4.61360 4.75133 4.77047 4.98038 5.16358 5.19742 5.30347 5.38792 5.41197 5.44070 5.55467 5.66583 5.68086 5.79957 5.84320 5.92026 5.99812 6.07800 6.09956 6.15368 6.19862 6.34437 6.41507 6.49823 6.58642 6.70180 6.77857 6.83486 7.01046 7.07890 7.32626 7.50300 7.72267 7.73467 8.38377 8.44499 9.55927 10.13218 10.48804 11.48447 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003701 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.621919 B = 7564.537613 C = 8950.663401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.023 4.023 3 N -0.347 5.347 4 C 0.026 3.974 5 C 0.590 3.410 6 O -0.528 6.528 7 N -0.582 5.582 8 C 0.118 3.882 9 C -0.152 4.152 10 C 0.179 3.821 11 H 0.051 0.949 12 N -0.718 5.718 13 C -0.237 4.237 14 H 0.068 0.932 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.288 1.288 21 C -0.109 4.109 22 H 0.066 0.934 23 C -0.136 4.136 24 C 0.121 3.879 25 C 0.499 3.501 26 O -0.501 6.501 27 N -0.585 5.585 28 H 0.420 0.580 29 C 0.140 3.860 30 C -0.129 4.129 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.701 -21.815 4.320 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 N -0.063 5.063 4 C -0.144 4.144 5 C 0.374 3.626 6 O -0.404 6.404 7 N -0.313 5.313 8 C -0.005 4.005 9 C -0.194 4.194 10 C 0.069 3.931 11 H 0.069 0.931 12 N -0.360 5.360 13 C -0.369 4.369 14 H 0.086 0.914 15 C -0.207 4.207 16 N -0.580 5.580 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.130 4.130 22 H 0.085 0.915 23 C -0.194 4.194 24 C -0.001 4.001 25 C 0.292 3.708 26 O -0.375 6.375 27 N -0.220 5.220 28 H 0.260 0.740 29 C 0.025 3.975 30 C -0.187 4.187 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.169 -20.824 4.626 21.332 hybrid contribution -0.226 -0.776 -0.531 0.967 sum -0.396 -21.599 4.095 21.988 Atomic orbital electron populations 1.20577 0.86840 1.04002 1.03122 1.20235 0.98047 0.85551 1.11034 1.67773 1.07934 1.29149 1.01468 1.23887 0.89277 0.93791 1.07436 1.17010 0.81859 0.81615 0.82100 1.90799 1.33477 1.78441 1.37662 1.47924 1.34015 1.18030 1.31314 1.21724 0.88980 1.01932 0.87825 1.22495 1.00887 0.99807 0.96170 1.20206 0.88764 0.88003 0.96129 0.93133 1.42467 1.40249 1.42019 1.11297 1.19169 1.11247 1.15111 0.91333 0.91370 1.24689 1.00026 0.99601 0.96372 1.69639 1.39029 1.31217 1.18083 0.86325 0.80731 0.78345 0.81074 1.21428 1.21830 1.21440 1.21723 0.97779 0.98297 0.95152 0.91530 1.21658 0.99796 0.97019 1.00947 1.21722 0.95975 0.84972 0.97431 1.19059 0.88302 0.83981 0.79498 1.91016 1.11655 1.85617 1.49174 1.43587 1.06431 1.11759 1.60267 0.73955 1.21481 0.83380 0.98986 0.93641 1.21214 1.00897 0.91717 1.04826 0.90706 0.89699 0.90670 0.90999 0.89281 0.90755 0.93657 0.78027 0.93504 0.93694 0.92804 0.90973 0.90207 0.89592 0.88473 0.90053 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.24 36.01 0.33 -0.27 16 2 C -0.02 -0.23 6.70 -83.18 -0.56 -0.79 16 3 N -0.35 -4.94 8.23 -4.85 -0.04 -4.98 16 4 C 0.03 0.42 5.72 -80.46 -0.46 -0.04 16 5 C 0.59 11.42 7.13 -12.49 -0.09 11.33 16 6 O -0.53 -11.68 16.33 5.15 0.08 -11.60 16 7 N -0.58 -10.77 2.98 -174.27 -0.52 -11.29 16 8 C 0.12 2.10 5.83 -3.94 -0.02 2.08 16 9 C -0.15 -2.71 5.76 -26.84 -0.15 -2.86 16 10 C 0.18 3.49 2.53 -67.88 -0.17 3.32 16 11 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 12 N -0.72 -16.86 3.64 -53.38 -0.19 -17.06 16 13 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 14 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 17 Si 0.90 21.85 29.55 -169.99 -5.02 16.82 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.11 -1.92 2.67 -90.50 -0.24 -2.16 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.14 -2.29 9.06 37.16 0.34 -1.95 16 24 C 0.12 2.23 5.41 -3.71 -0.02 2.21 16 25 C 0.50 7.41 7.92 -12.68 -0.10 7.31 16 26 O -0.50 -9.20 17.41 4.92 0.09 -9.11 16 27 N -0.58 -5.35 5.29 -9.45 -0.05 -5.40 16 28 H 0.42 2.48 8.81 -40.82 -0.36 2.12 16 29 C 0.14 1.03 6.78 -81.98 -0.56 0.47 16 30 C -0.13 -0.31 9.18 36.01 0.33 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.29 6.55 -51.93 -0.34 -0.05 16 34 H 0.07 1.18 5.12 -51.93 -0.27 0.91 16 35 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.38 9.68 5.92 -40.82 -0.24 9.44 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.38 7.53 -51.93 -0.39 0.99 16 43 H 0.08 1.58 6.64 -51.93 -0.34 1.23 16 44 H 0.09 1.58 7.03 -51.93 -0.37 1.22 16 45 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 47 H 0.10 0.14 6.56 -51.93 -0.34 -0.20 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -35.31 376.57 -7.70 -43.00 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.82 Total: 8.57 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -1.62 Total: 11.86 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -0.08 Total: -65.23 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.17 Total: -20.71 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.31 -7.70 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.062 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds