Wall clock time and date at job start Tue Mar 31 2020 17:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32167 * 119.14095 * 2 1 4 4 C 1.32367 * 120.60269 * 180.02562 * 3 2 1 5 5 C 1.47501 * 120.51041 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00215 * 126.85761 * 5 4 3 7 7 N 1.34776 * 120.00049 * 306.86035 * 5 4 3 8 8 C 1.46924 * 120.63031 * 4.47547 * 7 5 4 9 9 C 1.52757 * 109.00795 * 233.58480 * 8 7 5 10 10 C 1.53038 * 109.38414 * 305.58390 * 9 8 7 11 11 H 1.09003 * 109.45242 * 181.25240 * 10 9 8 12 12 N 1.46506 * 109.46141 * 301.22280 * 10 9 8 13 13 C 1.36932 * 119.99784 * 275.06353 * 12 10 9 14 14 H 1.08001 * 120.00150 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00005 * 179.97438 * 13 12 10 16 16 N 1.31621 * 119.99852 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46881 * 60.00049 * 17 15 13 19 19 H 1.48501 * 109.47523 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47293 * 300.00243 * 17 15 13 21 21 C 1.53049 * 109.53470 * 61.24157 * 10 9 8 22 22 H 1.08996 * 109.52100 * 58.60382 * 21 10 9 23 23 C 1.53000 * 109.49365 * 178.68512 * 21 10 9 24 24 C 1.46929 * 120.63125 * 184.75274 * 7 5 4 25 25 C 1.46674 * 118.98555 * 359.97438 * 4 3 2 26 26 O 1.21851 * 120.79273 * 179.97438 * 25 4 3 27 27 N 1.35160 * 118.42760 * 0.02562 * 25 4 3 28 28 H 0.96996 * 120.36457 * 179.97438 * 27 25 4 29 29 C 1.34896 * 119.26334 * 359.97438 * 27 25 4 30 30 C 1.50700 * 119.49639 * 180.27601 * 29 27 25 31 31 H 1.09001 * 109.47156 * 269.97955 * 1 2 3 32 32 H 1.09000 * 109.46751 * 29.97657 * 1 2 3 33 33 H 1.08998 * 109.47097 * 149.97858 * 1 2 3 34 34 H 1.09006 * 109.58688 * 353.41955 * 8 7 5 35 35 H 1.08998 * 109.58614 * 113.84014 * 8 7 5 36 36 H 1.09001 * 109.56586 * 185.55276 * 9 8 7 37 37 H 1.08993 * 109.38766 * 65.51324 * 9 8 7 38 38 H 0.97001 * 119.99646 * 95.06829 * 12 10 9 39 39 H 0.96991 * 120.00036 * 179.97438 * 16 15 13 40 40 H 1.09009 * 109.46631 * 179.83836 * 23 21 10 41 41 H 1.08994 * 109.47327 * 299.83286 * 23 21 10 42 42 H 1.08993 * 109.47263 * 59.84006 * 23 21 10 43 43 H 1.08999 * 109.58447 * 246.15433 * 24 7 5 44 44 H 1.08998 * 109.58737 * 6.43685 * 24 7 5 45 45 H 1.09005 * 109.46531 * 269.72073 * 30 29 27 46 46 H 1.08993 * 109.47407 * 29.71849 * 30 29 27 47 47 H 1.08997 * 109.47146 * 149.72359 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1881 -0.0005 5 6 4.1900 2.4776 -0.0011 6 8 5.0378 2.7027 0.8411 7 7 3.9048 3.4065 -0.9350 8 6 2.8167 3.1900 -1.8983 9 6 3.3616 3.3724 -3.3137 10 6 4.0372 4.7410 -3.4254 11 1 4.4069 4.8815 -4.4411 12 7 3.0664 5.7918 -3.1095 13 6 2.2322 6.2688 -4.0850 14 1 2.2895 5.8700 -5.0871 15 6 1.3119 7.2640 -3.7857 16 7 1.2417 7.7496 -2.5643 17 14 0.1733 7.9142 -5.1161 18 1 -0.6590 6.8024 -5.6420 19 1 -0.7070 8.9647 -4.5444 20 1 0.9811 8.4927 -6.2198 21 6 5.2076 4.8158 -2.4420 22 1 5.9186 4.0191 -2.6607 23 6 5.9025 6.1721 -2.5775 24 6 4.6800 4.6522 -1.0131 25 6 4.2171 -0.0763 -0.0005 26 8 5.4356 -0.0837 -0.0014 27 7 3.5184 -1.2333 -0.0005 28 1 3.9814 -2.0857 -0.0009 29 6 2.1702 -1.1895 0.0000 30 6 1.3860 -2.4764 0.0063 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 2.4254 2.1787 -1.7864 35 1 2.0213 3.9135 -1.7198 36 1 2.5429 3.3113 -4.0307 37 1 4.0895 2.5891 -3.5249 38 1 3.0148 6.1497 -2.2094 39 1 0.5990 8.4453 -2.3552 40 1 6.7342 6.2260 -1.8749 41 1 6.2778 6.2880 -3.5943 42 1 5.1909 6.9684 -2.3599 43 1 4.0395 5.4974 -0.7611 44 1 5.5162 4.6066 -0.3155 45 1 1.1921 -2.7887 -1.0199 46 1 1.9592 -3.2487 0.5190 47 1 0.4393 -2.3224 0.5242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036084916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:47 Heat of formation + Delta-G solvation = -38.324500 kcal Electronic energy + Delta-G solvation = -30142.594647 eV Core-core repulsion = 26132.197700 eV Total energy + Delta-G solvation = -4010.396947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.96885 -41.19804 -39.32562 -38.99194 -36.70585 -35.82425 -34.53660 -33.99938 -33.02499 -30.96034 -30.14572 -28.41072 -27.38788 -26.38997 -25.65229 -25.27440 -23.97531 -23.09164 -21.48000 -20.01928 -19.84831 -19.24744 -19.13115 -18.10984 -17.48115 -17.10334 -16.98030 -16.59666 -16.03675 -15.91315 -15.58586 -15.18647 -15.04928 -14.90988 -14.86614 -14.39731 -14.27817 -14.06261 -13.95797 -13.84659 -13.60150 -13.15009 -12.97547 -12.82643 -12.75873 -12.69428 -12.59501 -12.45519 -12.42675 -12.31969 -12.13638 -11.97711 -11.88161 -11.57752 -11.42407 -11.18072 -10.84574 -10.52316 -9.69961 -9.09355 -8.90449 -7.84609 -5.11838 -0.89110 0.44347 1.08332 1.49512 1.52016 1.53946 1.59820 1.92535 2.29086 2.62860 2.86707 3.04263 3.41835 3.48228 3.62866 3.75967 3.85438 3.86956 4.03705 4.07895 4.29421 4.37227 4.47241 4.57899 4.61004 4.64810 4.69563 4.70453 4.83828 4.87163 4.89777 4.94868 5.02214 5.07452 5.11037 5.17558 5.21431 5.23444 5.25303 5.27829 5.46696 5.49240 5.59390 5.62536 6.28594 6.35919 6.40583 6.54292 6.96061 7.43477 8.18309 8.43562 9.38505 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013276 B = 0.003701 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.621919 B = 7564.537613 C = 8950.663401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.050 4.050 3 N -0.352 5.352 4 C -0.050 4.050 5 C 0.587 3.413 6 O -0.572 6.572 7 N -0.585 5.585 8 C 0.131 3.869 9 C -0.143 4.143 10 C 0.175 3.825 11 H 0.053 0.947 12 N -0.724 5.724 13 C -0.230 4.230 14 H 0.076 0.924 15 C -0.072 4.072 16 N -0.969 5.969 17 Si 0.966 3.034 18 H -0.278 1.278 19 H -0.302 1.302 20 H -0.282 1.282 21 C -0.100 4.100 22 H 0.082 0.918 23 C -0.129 4.129 24 C 0.124 3.876 25 C 0.497 3.503 26 O -0.552 6.552 27 N -0.560 5.560 28 H 0.441 0.559 29 C 0.195 3.805 30 C -0.132 4.132 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.373 0.627 39 H 0.247 0.753 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -26.128 3.142 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.179 4.179 3 N -0.069 5.069 4 C -0.212 4.212 5 C 0.374 3.626 6 O -0.451 6.451 7 N -0.315 5.315 8 C 0.009 3.991 9 C -0.184 4.184 10 C 0.067 3.933 11 H 0.071 0.929 12 N -0.365 5.365 13 C -0.362 4.362 14 H 0.094 0.906 15 C -0.264 4.264 16 N -0.620 5.620 17 Si 0.796 3.204 18 H -0.204 1.204 19 H -0.229 1.229 20 H -0.209 1.209 21 C -0.120 4.120 22 H 0.100 0.900 23 C -0.187 4.187 24 C 0.001 3.999 25 C 0.292 3.708 26 O -0.431 6.431 27 N -0.194 5.194 28 H 0.285 0.715 29 C 0.077 3.923 30 C -0.189 4.189 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.207 0.793 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.146 0.854 46 H 0.127 0.873 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.775 -25.165 3.406 25.456 hybrid contribution 0.109 0.240 -0.126 0.292 sum -1.666 -24.925 3.280 25.195 Atomic orbital electron populations 1.20727 0.84269 1.05061 1.04255 1.20979 0.99698 0.85295 1.11935 1.67623 1.07318 1.31965 0.99977 1.23044 0.89906 0.92776 1.15517 1.17535 0.81393 0.82690 0.80987 1.90733 1.35665 1.79617 1.39050 1.47975 1.34046 1.18013 1.31477 1.21533 0.87972 1.01836 0.87737 1.22370 1.01065 0.99110 0.95863 1.20396 0.88656 0.87724 0.96572 0.92942 1.42570 1.40700 1.42889 1.10300 1.19545 1.10605 1.14086 0.91969 0.90599 1.25409 1.02114 1.00667 0.98188 1.69813 1.40026 1.32099 1.20048 0.85319 0.78833 0.77548 0.78664 1.20417 1.22853 1.20874 1.21649 0.97279 0.99237 0.93786 0.90006 1.21586 0.99598 0.95453 1.02065 1.21603 0.95483 0.84682 0.98083 1.18837 0.87680 0.84877 0.79395 1.90975 1.13466 1.86407 1.52258 1.43526 1.07283 1.11290 1.57339 0.71529 1.22426 0.82493 1.00804 0.86592 1.21613 1.01212 0.88811 1.07250 0.89546 0.91791 0.86511 0.89280 0.92545 0.90973 0.91588 0.79324 0.94375 0.91715 0.91820 0.93813 0.92429 0.89939 0.85426 0.87322 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.24 71.24 0.66 -0.21 16 2 C -0.05 -0.86 6.70 42.03 0.28 -0.58 16 3 N -0.35 -9.98 8.23 -169.24 -1.39 -11.38 16 4 C -0.05 -1.69 5.72 43.71 0.25 -1.44 16 5 C 0.59 24.21 7.13 86.69 0.62 24.83 16 6 O -0.57 -27.22 16.33 -3.91 -0.06 -27.29 16 7 N -0.58 -22.92 2.98 -823.53 -2.45 -25.37 16 8 C 0.13 4.86 5.83 86.22 0.50 5.36 16 9 C -0.14 -5.07 5.76 30.53 0.18 -4.90 16 10 C 0.18 6.88 2.53 45.02 0.11 7.00 16 11 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 12 N -0.72 -35.03 3.64 -322.79 -1.18 -36.20 16 13 C -0.23 -12.26 9.93 84.04 0.83 -11.43 16 14 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 15 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 16 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 17 Si 0.97 45.49 29.55 68.60 2.03 47.51 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 C -0.10 -3.56 2.67 -10.71 -0.03 -3.59 16 22 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 23 C -0.13 -4.41 9.06 71.98 0.65 -3.75 16 24 C 0.12 4.86 5.41 86.36 0.47 5.33 16 25 C 0.50 14.73 7.92 86.39 0.68 15.42 16 26 O -0.55 -20.94 17.41 -4.71 -0.08 -21.02 16 27 N -0.56 -8.56 5.29 -301.76 -1.60 -10.16 16 28 H 0.44 3.47 8.81 -92.71 -0.82 2.65 16 29 C 0.20 1.99 6.78 41.61 0.28 2.27 16 30 C -0.13 0.32 9.18 71.24 0.65 0.98 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.12 0.19 6.55 -2.39 -0.02 0.17 16 34 H 0.09 2.98 5.12 -2.38 -0.01 2.96 16 35 H 0.06 2.45 7.74 -2.39 -0.02 2.43 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.57 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.37 19.83 5.92 -92.71 -0.55 19.28 16 39 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.74 7.53 -2.39 -0.02 1.72 16 43 H 0.06 2.49 6.64 -2.39 -0.02 2.47 16 44 H 0.08 3.27 7.03 -2.39 -0.02 3.25 16 45 H 0.13 -0.73 8.14 -2.38 -0.02 -0.75 16 46 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.13 -0.65 6.56 -2.39 -0.02 -0.67 16 Total: -1.00 -84.65 376.57 1.81 -82.84 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: -0.35 Total: 27.70 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 6.61 Total: 31.74 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -6.34 Total: -141.49 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.15 Total: -48.31 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -84.65 1.81 -82.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.516 kcal (2) G-P(sol) polarization free energy of solvation -84.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds