Wall clock time and date at job start Tue Mar 31 2020 17:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32167 * 119.14136 * 2 1 4 4 C 1.32372 * 120.60618 * 179.76456 * 3 2 1 5 5 C 1.47493 * 120.50862 * 180.25620 * 4 3 2 6 6 O 1.21604 * 119.99546 * 188.91083 * 5 4 3 7 7 N 1.34782 * 120.00603 * 8.91408 * 5 4 3 8 8 C 1.46927 * 120.62599 * 7.52892 * 7 5 4 9 9 C 1.53191 * 108.77181 * 126.37074 * 8 7 5 10 10 C 1.53045 * 109.31066 * 54.63750 * 9 8 7 11 11 H 1.09000 * 109.45824 * 178.60975 * 10 9 8 12 12 N 1.46497 * 109.46197 * 58.65016 * 10 9 8 13 13 C 1.36943 * 119.99845 * 85.00255 * 12 10 9 14 14 H 1.07999 * 119.99687 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00018 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00116 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47128 * 90.00333 * 17 15 13 19 19 H 1.48498 * 109.47238 * 210.00373 * 17 15 13 20 20 H 1.48505 * 109.47183 * 330.00333 * 17 15 13 21 21 C 1.53042 * 109.53467 * 298.62961 * 10 9 8 22 22 H 1.09002 * 109.49948 * 301.41345 * 21 10 9 23 23 C 1.53002 * 109.49349 * 181.35221 * 21 10 9 24 24 C 1.46924 * 120.62976 * 187.25296 * 7 5 4 25 25 C 1.46676 * 118.97794 * 0.50168 * 4 3 2 26 26 O 1.21857 * 120.78302 * 179.73418 * 25 4 3 27 27 N 1.35155 * 118.42935 * 359.75003 * 25 4 3 28 28 H 0.97002 * 120.36683 * 179.97438 * 27 25 4 29 29 C 1.34891 * 119.26624 * 0.02562 * 27 25 4 30 30 C 1.50702 * 119.49790 * 180.02562 * 29 27 25 31 31 H 1.09002 * 109.46781 * 269.72704 * 1 2 3 32 32 H 1.08993 * 109.47383 * 149.72842 * 1 2 3 33 33 H 1.09000 * 109.46842 * 29.72402 * 1 2 3 34 34 H 1.09001 * 109.58404 * 246.16093 * 8 7 5 35 35 H 1.08998 * 109.58732 * 6.58591 * 8 7 5 36 36 H 1.09000 * 109.49639 * 174.58148 * 9 8 7 37 37 H 1.08990 * 109.49878 * 294.68165 * 9 8 7 38 38 H 0.96998 * 120.00603 * 264.99778 * 12 10 9 39 39 H 0.96995 * 120.00553 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47694 * 59.99993 * 23 21 10 41 41 H 1.09001 * 109.47149 * 180.02562 * 23 21 10 42 42 H 1.09003 * 109.47218 * 299.99522 * 23 21 10 43 43 H 1.08992 * 109.58722 * 353.41702 * 24 7 5 44 44 H 1.09004 * 109.58362 * 113.84601 * 24 7 5 45 45 H 1.09002 * 109.47165 * 269.97300 * 30 29 27 46 46 H 1.08994 * 109.47667 * 29.97528 * 30 29 27 47 47 H 1.09005 * 109.46916 * 149.97853 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4739 1.1882 0.0047 5 6 4.1899 2.4777 0.0104 6 8 5.3952 2.5044 -0.1485 7 7 3.5084 3.6263 0.1917 8 6 2.0832 3.6027 0.5479 9 6 1.8769 4.4441 1.8114 10 6 2.4448 5.8469 1.5836 11 1 2.2772 6.4552 2.4724 12 7 1.7748 6.4644 0.4365 13 6 0.5835 7.1173 0.6093 14 1 0.1378 7.1766 1.5912 15 6 -0.0516 7.7020 -0.4777 16 7 -1.1963 8.3300 -0.3116 17 14 0.7191 7.5987 -2.1762 18 1 0.2341 6.3766 -2.8664 19 1 0.3385 8.7972 -2.9662 20 1 2.1973 7.5403 -2.0464 21 6 3.9469 5.7521 1.3064 22 1 4.4427 5.2703 2.1492 23 6 4.5200 7.1574 1.1123 24 6 4.1781 4.9255 0.0428 25 6 4.2171 -0.0763 -0.0014 26 8 5.4356 -0.0835 -0.0022 27 7 3.5184 -1.2333 -0.0063 28 1 3.9814 -2.0857 -0.0108 29 6 2.1702 -1.1895 -0.0061 30 6 1.3860 -2.4763 -0.0111 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3634 -0.8875 -0.5180 33 1 -0.3633 0.8925 -0.5095 34 1 1.4953 4.0205 -0.2694 35 1 1.7709 2.5758 0.7377 36 1 0.8117 4.5142 2.0318 37 1 2.3921 3.9746 2.6492 38 1 2.1750 6.4109 -0.4455 39 1 -1.6400 8.7388 -1.0710 40 1 4.3537 7.7455 2.0148 41 1 5.5897 7.0894 0.9144 42 1 4.0248 7.6383 0.2687 43 1 5.2475 4.7711 -0.1006 44 1 3.7645 5.4534 -0.8165 45 1 1.1965 -2.7824 -1.0399 46 1 1.9570 -3.2519 0.4993 47 1 0.4371 -2.3255 0.5037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036084917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:51 Heat of formation + Delta-G solvation = 5.053577 kcal Electronic energy + Delta-G solvation = -30312.478906 eV Core-core repulsion = 26303.962973 eV Total energy + Delta-G solvation = -4008.515932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07658 -39.84692 -38.30630 -37.57288 -35.85606 -34.21376 -33.44204 -32.67294 -31.40471 -29.72201 -29.51584 -27.39685 -26.21780 -25.20123 -24.75762 -23.14386 -22.91463 -21.54579 -20.33267 -19.03974 -18.63138 -18.03178 -17.72774 -16.82870 -16.51655 -15.82762 -15.65250 -15.02980 -14.74634 -14.41870 -14.34513 -14.31934 -14.01105 -13.68981 -13.56599 -13.50250 -13.37590 -13.19085 -12.84010 -12.51069 -12.34750 -12.22717 -12.08587 -11.85238 -11.61483 -11.49933 -11.43557 -11.05595 -10.93142 -10.80058 -10.45703 -10.45378 -10.15803 -10.00566 -9.76210 -9.50043 -9.09571 -8.75894 -8.38030 -8.10796 -7.20576 -5.74019 -3.08077 -0.14510 1.37819 2.08170 2.60733 3.13190 3.38905 3.42555 3.47716 3.52347 3.64552 3.91250 3.95569 4.29517 4.61670 4.71341 4.71942 4.93105 5.11498 5.12552 5.23794 5.26303 5.37610 5.41753 5.46389 5.51577 5.65218 5.77396 5.80074 5.88644 5.91955 6.03486 6.03868 6.06789 6.12444 6.22916 6.41347 6.47304 6.52399 6.68817 6.73885 6.80227 6.88346 7.05370 7.22310 7.47743 7.71445 8.03510 8.37058 8.45457 9.24483 9.97443 10.18089 11.44658 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003981 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.965855 B = 7032.600082 C = 8211.891252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.033 4.033 3 N -0.336 5.336 4 C 0.013 3.987 5 C 0.576 3.424 6 O -0.522 6.522 7 N -0.583 5.583 8 C 0.082 3.918 9 C -0.150 4.150 10 C 0.184 3.816 11 H 0.058 0.942 12 N -0.743 5.743 13 C -0.236 4.236 14 H 0.090 0.910 15 C 0.006 3.994 16 N -0.935 5.935 17 Si 0.877 3.123 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.112 4.112 22 H 0.071 0.929 23 C -0.138 4.138 24 C 0.118 3.882 25 C 0.498 3.502 26 O -0.485 6.485 27 N -0.587 5.587 28 H 0.420 0.580 29 C 0.151 3.849 30 C -0.131 4.131 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.360 0.640 39 H 0.258 0.742 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -23.393 2.091 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 N -0.053 5.053 4 C -0.154 4.154 5 C 0.362 3.638 6 O -0.397 6.397 7 N -0.315 5.315 8 C -0.040 4.040 9 C -0.191 4.191 10 C 0.074 3.926 11 H 0.076 0.924 12 N -0.387 5.387 13 C -0.366 4.366 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.584 5.584 17 Si 0.708 3.292 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.132 4.132 22 H 0.090 0.910 23 C -0.196 4.196 24 C -0.004 4.004 25 C 0.290 3.710 26 O -0.356 6.356 27 N -0.223 5.223 28 H 0.260 0.740 29 C 0.036 3.964 30 C -0.189 4.189 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.194 0.806 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.618 -22.467 2.080 23.031 hybrid contribution 0.857 -1.078 -1.302 1.895 sum 5.475 -23.545 0.778 24.185 Atomic orbital electron populations 1.20605 0.86683 1.04104 1.03379 1.20400 0.98259 0.85814 1.11317 1.67818 1.08230 1.27529 1.01714 1.24007 0.88871 0.93987 1.08584 1.17069 0.86087 0.82062 0.78598 1.90849 1.12764 1.85999 1.50045 1.47960 1.12110 1.04661 1.66781 1.22861 0.78918 1.04134 0.98070 1.22519 1.02190 0.98075 0.96299 1.20201 0.88708 0.91914 0.91758 0.92440 1.42831 1.24766 1.65930 1.05162 1.19066 0.95402 1.25885 0.96224 0.89201 1.24605 0.96854 1.00351 0.97125 1.69687 1.17213 1.41339 1.30131 0.86673 0.78919 0.77315 0.86342 1.21155 1.21848 1.20392 1.21673 0.97981 0.96052 0.97455 0.91045 1.21676 0.99271 0.95678 1.02927 1.21607 0.98452 0.82143 0.98223 1.19017 0.88373 0.83879 0.79722 1.91052 1.11416 1.85277 1.47898 1.43708 1.06410 1.11913 1.60228 0.73952 1.21521 0.83450 0.98967 0.92501 1.21249 1.01028 0.91719 1.04883 0.90440 0.90685 0.89614 0.90634 0.85361 0.90400 0.93419 0.80619 0.93177 0.92352 0.93541 0.91668 0.89414 0.91372 0.88425 0.89964 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 9.25 36.01 0.33 -0.24 16 2 C -0.03 -0.30 6.70 -83.19 -0.56 -0.86 16 3 N -0.34 -4.36 6.17 -4.85 -0.03 -4.39 16 4 C 0.01 0.20 6.79 -80.46 -0.55 -0.35 16 5 C 0.58 10.52 7.65 -12.49 -0.10 10.42 16 6 O -0.52 -11.04 14.98 -14.97 -0.22 -11.27 16 7 N -0.58 -10.19 2.98 -174.28 -0.52 -10.71 16 8 C 0.08 1.38 5.66 -3.71 -0.02 1.36 16 9 C -0.15 -2.56 5.78 -26.61 -0.15 -2.72 16 10 C 0.18 3.46 2.53 -67.89 -0.17 3.29 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 N -0.74 -16.73 3.45 -53.38 -0.18 -16.92 16 13 C -0.24 -6.36 10.41 -15.06 -0.16 -6.51 16 14 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 15 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 16 N -0.94 -28.81 13.97 55.49 0.78 -28.03 16 17 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 21 C -0.11 -1.86 2.65 -90.72 -0.24 -2.10 16 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 23 C -0.14 -2.20 9.06 37.16 0.34 -1.86 16 24 C 0.12 2.05 5.41 -3.94 -0.02 2.03 16 25 C 0.50 7.01 7.92 -12.68 -0.10 6.91 16 26 O -0.48 -8.69 16.44 -15.19 -0.25 -8.94 16 27 N -0.59 -4.91 5.29 -9.45 -0.05 -4.96 16 28 H 0.42 2.19 8.81 -40.82 -0.36 1.83 16 29 C 0.15 1.00 6.78 -81.98 -0.56 0.44 16 30 C -0.13 -0.24 9.18 36.01 0.33 0.09 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.26 6.53 -51.93 -0.34 -0.08 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.44 7.74 -51.93 -0.40 1.03 16 35 H 0.13 1.96 4.01 -83.41 -0.33 1.63 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.36 8.19 3.80 -40.82 -0.16 8.04 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.17 7.54 -51.93 -0.39 0.78 16 43 H 0.09 1.52 7.00 -51.93 -0.36 1.16 16 44 H 0.07 1.25 6.64 -51.93 -0.34 0.90 16 45 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 46 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 47 H 0.10 0.09 6.54 -51.93 -0.34 -0.25 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -36.76 369.34 -8.19 -44.95 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.85 Total: 7.47 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.72 Total: 9.99 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.01 Total: -65.01 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.47 Total: -20.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.76 -8.19 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.007 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds