Wall clock time and date at job start Tue Mar 31 2020 17:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32167 * 119.14136 * 2 1 4 4 C 1.32372 * 120.60618 * 179.76456 * 3 2 1 5 5 C 1.47493 * 120.50862 * 180.25620 * 4 3 2 6 6 O 1.21604 * 119.99546 * 188.91083 * 5 4 3 7 7 N 1.34782 * 120.00603 * 8.91408 * 5 4 3 8 8 C 1.46927 * 120.62599 * 7.52892 * 7 5 4 9 9 C 1.53191 * 108.77181 * 126.37074 * 8 7 5 10 10 C 1.53045 * 109.31066 * 54.63750 * 9 8 7 11 11 H 1.09000 * 109.45824 * 178.60975 * 10 9 8 12 12 N 1.46497 * 109.46197 * 58.65016 * 10 9 8 13 13 C 1.36943 * 119.99845 * 85.00255 * 12 10 9 14 14 H 1.07999 * 119.99687 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00018 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00116 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47128 * 90.00333 * 17 15 13 19 19 H 1.48498 * 109.47238 * 210.00373 * 17 15 13 20 20 H 1.48505 * 109.47183 * 330.00333 * 17 15 13 21 21 C 1.53042 * 109.53467 * 298.62961 * 10 9 8 22 22 H 1.09002 * 109.49948 * 301.41345 * 21 10 9 23 23 C 1.53002 * 109.49349 * 181.35221 * 21 10 9 24 24 C 1.46924 * 120.62976 * 187.25296 * 7 5 4 25 25 C 1.46676 * 118.97794 * 0.50168 * 4 3 2 26 26 O 1.21857 * 120.78302 * 179.73418 * 25 4 3 27 27 N 1.35155 * 118.42935 * 359.75003 * 25 4 3 28 28 H 0.97002 * 120.36683 * 179.97438 * 27 25 4 29 29 C 1.34891 * 119.26624 * 0.02562 * 27 25 4 30 30 C 1.50702 * 119.49790 * 180.02562 * 29 27 25 31 31 H 1.09002 * 109.46781 * 269.72704 * 1 2 3 32 32 H 1.08993 * 109.47383 * 149.72842 * 1 2 3 33 33 H 1.09000 * 109.46842 * 29.72402 * 1 2 3 34 34 H 1.09001 * 109.58404 * 246.16093 * 8 7 5 35 35 H 1.08998 * 109.58732 * 6.58591 * 8 7 5 36 36 H 1.09000 * 109.49639 * 174.58148 * 9 8 7 37 37 H 1.08990 * 109.49878 * 294.68165 * 9 8 7 38 38 H 0.96998 * 120.00603 * 264.99778 * 12 10 9 39 39 H 0.96995 * 120.00553 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47694 * 59.99993 * 23 21 10 41 41 H 1.09001 * 109.47149 * 180.02562 * 23 21 10 42 42 H 1.09003 * 109.47218 * 299.99522 * 23 21 10 43 43 H 1.08992 * 109.58722 * 353.41702 * 24 7 5 44 44 H 1.09004 * 109.58362 * 113.84601 * 24 7 5 45 45 H 1.09002 * 109.47165 * 269.97300 * 30 29 27 46 46 H 1.08994 * 109.47667 * 29.97528 * 30 29 27 47 47 H 1.09005 * 109.46916 * 149.97853 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4739 1.1882 0.0047 5 6 4.1899 2.4777 0.0104 6 8 5.3952 2.5044 -0.1485 7 7 3.5084 3.6263 0.1917 8 6 2.0832 3.6027 0.5479 9 6 1.8769 4.4441 1.8114 10 6 2.4448 5.8469 1.5836 11 1 2.2772 6.4552 2.4724 12 7 1.7748 6.4644 0.4365 13 6 0.5835 7.1173 0.6093 14 1 0.1378 7.1766 1.5912 15 6 -0.0516 7.7020 -0.4777 16 7 -1.1963 8.3300 -0.3116 17 14 0.7191 7.5987 -2.1762 18 1 0.2341 6.3766 -2.8664 19 1 0.3385 8.7972 -2.9662 20 1 2.1973 7.5403 -2.0464 21 6 3.9469 5.7521 1.3064 22 1 4.4427 5.2703 2.1492 23 6 4.5200 7.1574 1.1123 24 6 4.1781 4.9255 0.0428 25 6 4.2171 -0.0763 -0.0014 26 8 5.4356 -0.0835 -0.0022 27 7 3.5184 -1.2333 -0.0063 28 1 3.9814 -2.0857 -0.0108 29 6 2.1702 -1.1895 -0.0061 30 6 1.3860 -2.4763 -0.0111 31 1 -0.3633 -0.0049 1.0277 32 1 -0.3634 -0.8875 -0.5180 33 1 -0.3633 0.8925 -0.5095 34 1 1.4953 4.0205 -0.2694 35 1 1.7709 2.5758 0.7377 36 1 0.8117 4.5142 2.0318 37 1 2.3921 3.9746 2.6492 38 1 2.1750 6.4109 -0.4455 39 1 -1.6400 8.7388 -1.0710 40 1 4.3537 7.7455 2.0148 41 1 5.5897 7.0894 0.9144 42 1 4.0248 7.6383 0.2687 43 1 5.2475 4.7711 -0.1006 44 1 3.7645 5.4534 -0.8165 45 1 1.1965 -2.7824 -1.0399 46 1 1.9570 -3.2519 0.4993 47 1 0.4371 -2.3255 0.5037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036084917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:50 Heat of formation + Delta-G solvation = -21.365651 kcal Electronic energy + Delta-G solvation = -30313.624529 eV Core-core repulsion = 26303.962973 eV Total energy + Delta-G solvation = -4009.661556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.98749 -41.18856 -39.39679 -38.93745 -36.80897 -35.82594 -34.54830 -33.96597 -33.12619 -31.44211 -30.14451 -28.33776 -27.51348 -26.41791 -25.68470 -24.93061 -23.96105 -23.00628 -21.47962 -20.12382 -19.92741 -19.68080 -19.11404 -17.89827 -17.43087 -17.07098 -16.85112 -16.67949 -16.25729 -15.83009 -15.67528 -15.17130 -15.04904 -14.95543 -14.83018 -14.47680 -14.42203 -14.14810 -13.92423 -13.89114 -13.61329 -13.30529 -13.16085 -12.95480 -12.76079 -12.73932 -12.59569 -12.47197 -12.40421 -12.33568 -12.01304 -11.94606 -11.74066 -11.67705 -11.35702 -11.21056 -10.93791 -10.04814 -9.68933 -9.21108 -9.06345 -7.96209 -5.26336 -1.00984 0.46775 1.21462 1.38072 1.38770 1.45139 1.48520 1.98734 2.46924 2.50762 2.85780 2.96076 3.36140 3.40487 3.61981 3.62832 3.72826 3.87184 3.99019 4.09303 4.35152 4.39594 4.46367 4.59299 4.61317 4.65278 4.68763 4.74198 4.83578 4.86337 4.92544 5.01419 5.07494 5.11261 5.13278 5.18532 5.22496 5.24858 5.30221 5.40368 5.43503 5.52919 5.69585 5.86200 6.27384 6.30476 6.42911 6.56971 7.06758 7.14172 7.91098 8.10352 9.25771 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003981 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.965855 B = 7032.600082 C = 8211.891252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.054 4.054 3 N -0.336 5.336 4 C -0.062 4.062 5 C 0.575 3.425 6 O -0.565 6.565 7 N -0.587 5.587 8 C 0.092 3.908 9 C -0.142 4.142 10 C 0.178 3.822 11 H 0.051 0.949 12 N -0.741 5.741 13 C -0.211 4.211 14 H 0.064 0.936 15 C -0.055 4.055 16 N -0.983 5.983 17 Si 0.935 3.065 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.260 1.260 21 C -0.102 4.102 22 H 0.086 0.914 23 C -0.134 4.134 24 C 0.118 3.882 25 C 0.496 3.504 26 O -0.538 6.538 27 N -0.562 5.562 28 H 0.440 0.560 29 C 0.207 3.793 30 C -0.135 4.135 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.149 0.851 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.361 0.639 39 H 0.255 0.745 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.127 0.873 46 H 0.109 0.891 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.258 -27.638 2.121 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.184 4.184 3 N -0.053 5.053 4 C -0.221 4.221 5 C 0.363 3.637 6 O -0.444 6.444 7 N -0.318 5.318 8 C -0.030 4.030 9 C -0.183 4.183 10 C 0.070 3.930 11 H 0.069 0.931 12 N -0.385 5.385 13 C -0.342 4.342 14 H 0.082 0.918 15 C -0.246 4.246 16 N -0.634 5.634 17 Si 0.764 3.236 18 H -0.209 1.209 19 H -0.225 1.225 20 H -0.186 1.186 21 C -0.121 4.121 22 H 0.104 0.896 23 C -0.192 4.192 24 C -0.004 4.004 25 C 0.291 3.709 26 O -0.416 6.416 27 N -0.197 5.197 28 H 0.284 0.716 29 C 0.088 3.912 30 C -0.192 4.192 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.195 0.805 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.128 0.872 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.985 -26.726 2.135 27.106 hybrid contribution 0.858 -0.115 -1.229 1.503 sum 4.843 -26.842 0.906 27.290 Atomic orbital electron populations 1.20761 0.84264 1.05060 1.04582 1.21079 0.99770 0.85582 1.11958 1.67478 1.07489 1.30128 1.00226 1.23185 0.89475 0.92986 1.16501 1.17512 0.85809 0.83152 0.77214 1.90793 1.14584 1.86848 1.52141 1.47981 1.12109 1.04645 1.67097 1.22812 0.78444 1.05072 0.96692 1.22401 1.01556 0.96991 0.97318 1.20405 0.90073 0.92426 0.90109 0.93081 1.42793 1.23604 1.65738 1.06364 1.19019 0.96075 1.24240 0.94845 0.91832 1.25213 0.97565 1.01188 1.00673 1.69839 1.19109 1.43518 1.30976 0.85715 0.79078 0.76836 0.81986 1.20868 1.22530 1.18563 1.21590 0.96253 0.96647 0.97645 0.89602 1.21643 1.00401 0.94856 1.02252 1.21548 0.98368 0.82491 0.98024 1.18867 0.87753 0.84862 0.79418 1.91013 1.13401 1.86112 1.51026 1.43653 1.07270 1.11483 1.57256 0.71596 1.22442 0.82542 1.00767 0.85489 1.21646 1.01378 0.88927 1.07209 0.89136 0.86721 0.91740 0.93199 0.83511 0.91436 0.91414 0.80536 0.93600 0.91818 0.91366 0.93777 0.89560 0.92623 0.85525 0.87228 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.25 71.24 0.66 -0.11 16 2 C -0.05 -0.81 6.70 42.03 0.28 -0.53 16 3 N -0.34 -8.41 6.17 -169.25 -1.04 -9.45 16 4 C -0.06 -1.91 6.79 43.71 0.30 -1.62 16 5 C 0.57 21.91 7.65 86.68 0.66 22.57 16 6 O -0.57 -25.30 14.98 15.31 0.23 -25.07 16 7 N -0.59 -21.10 2.98 -823.54 -2.45 -23.55 16 8 C 0.09 3.12 5.66 86.36 0.49 3.61 16 9 C -0.14 -4.87 5.78 30.67 0.18 -4.69 16 10 C 0.18 6.75 2.53 45.02 0.11 6.86 16 11 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 12 N -0.74 -33.83 3.45 -322.80 -1.11 -34.94 16 13 C -0.21 -11.62 10.41 84.03 0.87 -10.74 16 14 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 15 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 16 N -0.98 -62.27 13.97 21.65 0.30 -61.96 16 17 Si 0.93 46.20 27.74 68.60 1.90 48.11 16 18 H -0.28 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 20 H -0.26 -11.97 6.52 99.48 0.65 -11.33 16 21 C -0.10 -3.38 2.65 -10.86 -0.03 -3.40 16 22 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 23 C -0.13 -4.20 9.06 71.98 0.65 -3.55 16 24 C 0.12 4.21 5.41 86.22 0.47 4.68 16 25 C 0.50 13.86 7.92 86.39 0.68 14.54 16 26 O -0.54 -19.96 16.44 14.50 0.24 -19.72 16 27 N -0.56 -7.63 5.29 -301.76 -1.60 -9.23 16 28 H 0.44 2.85 8.81 -92.71 -0.82 2.03 16 29 C 0.21 1.73 6.78 41.61 0.28 2.01 16 30 C -0.13 0.50 9.18 71.24 0.65 1.16 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.11 0.07 6.53 -2.39 -0.02 0.05 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 35 H 0.15 4.49 4.01 -64.54 -0.26 4.23 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.36 16.53 3.80 -92.71 -0.35 16.18 16 39 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.04 1.56 7.54 -2.39 -0.02 1.55 16 43 H 0.09 3.10 7.00 -2.39 -0.02 3.08 16 44 H 0.06 2.09 6.64 -2.39 -0.02 2.07 16 45 H 0.13 -0.85 8.14 -2.39 -0.02 -0.87 16 46 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.13 -0.82 6.54 -2.38 -0.02 -0.84 16 Total: -1.00 -87.73 369.34 2.75 -84.99 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.45 Total: 22.77 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 6.73 Total: 28.06 kcal Atomic # 7 Polarization: -133.23 SS G_CDS: -5.90 Total: -139.13 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: 0.47 Total: -44.79 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.11 kcal Total: -87.73 2.75 -84.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036084917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.621 kcal (2) G-P(sol) polarization free energy of solvation -87.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds