Wall clock time and date at job start Tue Mar 31 2020 19:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33214 * 126.02125 * 2 1 4 4 C 1.31529 * 109.76329 * 180.28642 * 3 2 1 5 5 O 1.35211 * 125.49292 * 179.76804 * 4 3 2 6 6 N 1.34940 * 109.01688 * 359.75309 * 4 3 2 7 7 H 0.97003 * 126.54715 * 179.97438 * 6 4 3 8 8 C 1.36724 * 126.01585 * 179.86651 * 2 1 3 9 9 C 1.46383 * 126.82883 * 359.97438 * 8 2 1 10 10 O 1.21731 * 119.99739 * 352.84693 * 9 8 2 11 11 N 1.34772 * 119.99965 * 172.84559 * 9 8 2 12 12 C 1.48161 * 127.02452 * 179.87771 * 11 9 8 13 13 C 1.55045 * 103.31210 * 140.95346 * 12 11 9 14 14 C 1.54151 * 102.73354 * 36.99469 * 13 12 11 15 15 C 1.47609 * 127.02735 * 359.84984 * 11 9 8 16 16 C 1.52497 * 110.05385 * 97.46789 * 14 13 12 17 17 C 1.53130 * 109.58187 * 181.71971 * 16 14 13 18 18 C 1.53187 * 109.29009 * 299.49503 * 17 16 14 19 19 N 1.46927 * 108.88844 * 55.07331 * 18 17 16 20 20 C 1.36938 * 120.68147 * 125.96347 * 19 18 17 21 21 H 1.08006 * 119.99687 * 331.96047 * 20 19 18 22 22 C 1.38814 * 120.00581 * 151.95978 * 20 19 18 23 23 N 1.31618 * 119.99483 * 339.89183 * 22 20 19 24 24 Si 1.86794 * 120.00134 * 159.89092 * 22 20 19 25 25 H 1.48499 * 109.47369 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46913 * 120.00239 * 24 22 20 27 27 H 1.48505 * 109.46963 * 239.99820 * 24 22 20 28 28 C 1.47040 * 118.64207 * 305.97565 * 19 18 17 29 29 H 1.08996 * 109.47334 * 270.12882 * 1 2 3 30 30 H 1.08997 * 109.47392 * 30.13697 * 1 2 3 31 31 H 1.09007 * 109.46959 * 150.13495 * 1 2 3 32 32 H 0.96701 * 114.00524 * 269.97731 * 5 4 3 33 33 H 1.08995 * 110.65028 * 259.40984 * 12 11 9 34 34 H 1.09003 * 110.65044 * 22.34016 * 12 11 9 35 35 H 1.08996 * 110.76220 * 278.67734 * 13 12 11 36 36 H 1.09007 * 110.75627 * 155.30284 * 13 12 11 37 37 H 1.08996 * 109.97370 * 86.02420 * 15 11 9 38 38 H 1.09001 * 110.00585 * 324.76724 * 15 11 9 39 39 H 1.09003 * 109.45003 * 61.69379 * 16 14 13 40 40 H 1.08993 * 109.44852 * 301.74892 * 16 14 13 41 41 H 1.09001 * 109.50324 * 59.44503 * 17 16 14 42 42 H 1.09004 * 109.49891 * 179.55455 * 17 16 14 43 43 H 1.08997 * 109.56726 * 174.88997 * 18 17 16 44 44 H 1.08999 * 109.57253 * 295.24914 * 18 17 16 45 45 H 0.96999 * 120.00023 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.57949 * 172.57800 * 28 19 18 47 47 H 1.08993 * 109.58641 * 292.99639 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0774 0.0000 4 6 3.5531 0.7092 -0.0062 5 8 4.6149 1.5463 -0.0125 6 7 3.6181 -0.6386 -0.0049 7 1 4.4243 -1.1781 -0.0089 8 6 2.3110 -1.1059 0.0026 9 6 1.8792 -2.5046 0.0064 10 8 0.7002 -2.7772 0.1388 11 7 2.7869 -3.4904 -0.1368 12 6 2.5253 -4.9487 -0.1530 13 6 3.4919 -5.4727 -1.2461 14 6 4.7406 -4.5911 -1.0464 15 6 4.2449 -3.3380 -0.3100 16 6 5.7725 -5.3298 -0.2008 17 6 6.9896 -4.4287 0.0266 18 6 7.6137 -4.0704 -1.3257 19 7 6.5815 -3.4698 -2.1818 20 6 6.7810 -2.2461 -2.7630 21 1 7.4278 -1.5223 -2.2894 22 6 6.1519 -1.9357 -3.9608 23 7 5.6995 -2.8989 -4.7354 24 14 5.9473 -0.1511 -4.4733 25 1 6.5377 0.7326 -3.4362 26 1 6.6393 0.0746 -5.7677 27 1 4.5026 0.1582 -4.6239 28 6 5.3299 -4.2096 -2.4014 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8887 -0.5159 31 1 -0.3633 -0.8913 -0.5118 32 1 4.9195 1.7887 -0.8977 33 1 2.7617 -5.3924 0.8141 34 1 1.4889 -5.1503 -0.4241 35 1 3.0688 -5.3241 -2.2395 36 1 3.7302 -6.5233 -1.0797 37 1 4.7295 -3.2621 0.6633 38 1 4.4590 -2.4487 -0.9028 39 1 6.0842 -6.2367 -0.7189 40 1 5.3319 -5.5941 0.7604 41 1 6.6774 -3.5172 0.5363 42 1 7.7228 -4.9551 0.6377 43 1 8.4242 -3.3572 -1.1762 44 1 8.0014 -4.9723 -1.7994 45 1 5.2596 -2.6820 -5.5722 46 1 4.6237 -3.5801 -2.9429 47 1 5.5350 -5.1117 -2.9778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040250571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:46 Heat of formation + Delta-G solvation = 15.774280 kcal Electronic energy + Delta-G solvation = -31344.548127 eV Core-core repulsion = 27336.497079 eV Total energy + Delta-G solvation = -4008.051048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.21008 -40.10602 -38.39319 -37.26425 -35.89233 -33.56366 -33.05793 -31.61747 -30.67100 -30.18950 -29.12138 -27.23282 -25.70524 -25.43281 -23.57136 -22.43639 -22.19087 -21.31039 -20.26630 -19.74240 -18.88205 -18.13301 -17.32010 -16.79297 -16.48893 -15.80742 -15.70127 -15.32724 -14.88415 -14.41272 -14.20975 -14.08290 -13.63165 -13.46308 -13.28985 -13.07293 -12.99021 -12.54095 -12.52189 -12.37195 -12.23909 -12.05995 -11.93306 -11.79800 -11.37773 -11.22070 -11.08235 -10.88651 -10.62275 -10.55088 -10.40061 -10.20588 -10.03684 -9.96890 -9.84184 -9.64565 -9.59170 -8.72730 -8.65233 -8.21564 -6.89258 -6.01733 -3.42855 1.26666 2.47731 2.78321 3.04700 3.18425 3.22268 3.30367 3.39435 3.93553 4.28033 4.55484 4.71069 4.85660 5.01109 5.06215 5.16785 5.22110 5.27670 5.34920 5.43327 5.51972 5.65530 5.67446 5.72630 5.76257 5.87103 5.89616 5.97693 6.00686 6.08933 6.12799 6.19750 6.23696 6.25506 6.41160 6.51273 6.54276 6.59414 6.69003 6.74063 6.80633 7.06055 7.36072 7.54553 7.59931 7.63628 7.86994 8.19615 8.21851 8.98336 9.62519 10.20777 11.06799 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.006540 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.592837 B = 4280.535771 C = 5943.288518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.107 3.893 3 N -0.493 5.493 4 C 0.412 3.588 5 O -0.443 6.443 6 N -0.550 5.550 7 H 0.429 0.571 8 C -0.078 4.078 9 C 0.616 3.384 10 O -0.533 6.533 11 N -0.619 5.619 12 C 0.110 3.890 13 C -0.125 4.125 14 C -0.089 4.089 15 C 0.106 3.894 16 C -0.096 4.096 17 C -0.138 4.138 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.264 4.264 21 H 0.067 0.933 22 C 0.009 3.991 23 N -0.892 5.892 24 Si 0.888 3.112 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.287 1.287 28 C 0.187 3.813 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.255 0.745 46 H 0.084 0.916 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -2.014 9.247 10.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 N -0.224 5.224 4 C 0.111 3.889 5 O -0.245 6.245 6 N -0.172 5.172 7 H 0.275 0.725 8 C -0.194 4.194 9 C 0.406 3.594 10 O -0.411 6.411 11 N -0.352 5.352 12 C -0.013 4.013 13 C -0.163 4.163 14 C -0.092 4.092 15 C -0.017 4.017 16 C -0.133 4.133 17 C -0.177 4.177 18 C 0.016 3.984 19 N -0.314 5.314 20 C -0.393 4.393 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.534 5.534 24 Si 0.717 3.283 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.214 1.214 28 C 0.061 3.939 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.268 0.732 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.208 -1.218 9.756 10.694 hybrid contribution 1.181 -0.024 -0.985 1.538 sum -3.027 -1.243 8.771 9.362 Atomic orbital electron populations 1.20261 0.86121 1.03581 1.03038 1.20870 0.96725 0.85923 0.99284 1.70230 0.98642 1.30359 1.23219 1.20190 0.87330 0.79043 1.02370 1.84761 1.43390 1.61565 1.34801 1.44466 1.09354 1.08122 1.55289 0.72451 1.20667 0.83198 0.94908 1.20600 1.16234 0.84665 0.81869 0.76613 1.90804 1.15768 1.82702 1.51809 1.48802 1.08151 1.06810 1.71416 1.22474 1.00671 0.79115 0.98992 1.22756 0.95073 0.99318 0.99189 1.21777 0.94613 0.93004 0.99810 1.22459 0.78690 1.00917 0.99625 1.21405 0.95460 0.98200 0.98269 1.22082 0.97191 0.98920 0.99499 1.20932 0.91614 0.96345 0.89478 1.44107 1.12304 1.19611 1.55401 1.19155 1.28548 0.89882 1.01713 0.91552 1.25033 1.01872 0.97117 0.95111 1.70046 1.41822 1.30267 1.11313 0.86467 0.77776 0.85296 0.78757 1.20133 1.21326 1.21358 1.20736 0.88451 0.95754 0.88978 0.90630 0.91007 0.89335 0.73166 0.91243 0.89835 0.90333 0.90127 0.91930 0.89673 0.91890 0.93228 0.92645 0.92789 0.92792 0.96326 0.93458 0.89823 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 9.80 36.01 0.35 -0.65 16 2 C 0.11 1.81 7.14 -82.54 -0.59 1.22 16 3 N -0.49 -8.57 11.22 -10.83 -0.12 -8.70 16 4 C 0.41 6.73 9.43 -89.60 -0.84 5.88 16 5 O -0.44 -6.17 13.62 -17.33 -0.24 -6.41 16 6 N -0.55 -8.85 5.53 -10.90 -0.06 -8.91 16 7 H 0.43 6.58 5.52 -40.82 -0.23 6.35 16 8 C -0.08 -1.34 6.87 -81.97 -0.56 -1.90 16 9 C 0.62 10.67 7.85 -12.99 -0.10 10.57 16 10 O -0.53 -9.89 15.11 5.16 0.08 -9.81 16 11 N -0.62 -9.72 3.30 -171.48 -0.57 -10.28 16 12 C 0.11 1.47 7.09 -2.05 -0.01 1.45 16 13 C -0.12 -1.70 6.15 -25.05 -0.15 -1.86 16 14 C -0.09 -1.40 0.61 -154.08 -0.09 -1.49 16 15 C 0.11 1.65 4.17 -3.14 -0.01 1.63 16 16 C -0.10 -1.31 4.40 -26.92 -0.12 -1.43 16 17 C -0.14 -1.99 5.87 -26.57 -0.16 -2.14 16 18 C 0.14 2.59 6.50 -3.71 -0.02 2.56 16 19 N -0.59 -12.71 2.76 -172.59 -0.48 -13.19 16 20 C -0.26 -6.35 9.56 -15.06 -0.14 -6.50 16 21 H 0.07 1.58 7.91 -52.48 -0.41 1.17 16 22 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 23 N -0.89 -23.98 11.42 55.49 0.63 -23.34 16 24 Si 0.89 19.80 29.60 -169.99 -5.03 14.77 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.19 3.83 3.61 -3.95 -0.01 3.82 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.28 6.64 -51.93 -0.34 0.94 16 32 H 0.41 4.16 9.06 45.56 0.41 4.57 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 35 H 0.08 1.19 7.84 -51.93 -0.41 0.78 16 36 H 0.08 0.93 7.83 -51.93 -0.41 0.52 16 37 H 0.06 0.90 6.54 -51.93 -0.34 0.56 16 38 H 0.09 1.52 5.10 -51.93 -0.27 1.26 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.80 6.65 -51.93 -0.35 0.46 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 46 H 0.08 2.00 6.20 -51.93 -0.32 1.68 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -29.69 366.27 -8.82 -38.50 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.99 Total: 10.55 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -2.56 Total: 11.30 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.59 Total: -64.42 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.16 Total: -16.22 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.69 -8.82 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040250571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.276 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds