Wall clock time and date at job start Tue Mar 31 2020 19:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33214 * 126.02125 * 2 1 4 4 C 1.31529 * 109.76329 * 180.28642 * 3 2 1 5 5 O 1.35211 * 125.49292 * 179.76804 * 4 3 2 6 6 N 1.34940 * 109.01688 * 359.75309 * 4 3 2 7 7 H 0.97003 * 126.54715 * 179.97438 * 6 4 3 8 8 C 1.36724 * 126.01585 * 179.86651 * 2 1 3 9 9 C 1.46383 * 126.82883 * 359.97438 * 8 2 1 10 10 O 1.21731 * 119.99739 * 352.84693 * 9 8 2 11 11 N 1.34772 * 119.99965 * 172.84559 * 9 8 2 12 12 C 1.48161 * 127.02452 * 179.87771 * 11 9 8 13 13 C 1.55045 * 103.31210 * 140.95346 * 12 11 9 14 14 C 1.54151 * 102.73354 * 36.99469 * 13 12 11 15 15 C 1.47609 * 127.02735 * 359.84984 * 11 9 8 16 16 C 1.52497 * 110.05385 * 97.46789 * 14 13 12 17 17 C 1.53130 * 109.58187 * 181.71971 * 16 14 13 18 18 C 1.53187 * 109.29009 * 299.49503 * 17 16 14 19 19 N 1.46927 * 108.88844 * 55.07331 * 18 17 16 20 20 C 1.36938 * 120.68147 * 125.96347 * 19 18 17 21 21 H 1.08006 * 119.99687 * 331.96047 * 20 19 18 22 22 C 1.38814 * 120.00581 * 151.95978 * 20 19 18 23 23 N 1.31618 * 119.99483 * 339.89183 * 22 20 19 24 24 Si 1.86794 * 120.00134 * 159.89092 * 22 20 19 25 25 H 1.48499 * 109.47369 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46913 * 120.00239 * 24 22 20 27 27 H 1.48505 * 109.46963 * 239.99820 * 24 22 20 28 28 C 1.47040 * 118.64207 * 305.97565 * 19 18 17 29 29 H 1.08996 * 109.47334 * 270.12882 * 1 2 3 30 30 H 1.08997 * 109.47392 * 30.13697 * 1 2 3 31 31 H 1.09007 * 109.46959 * 150.13495 * 1 2 3 32 32 H 0.96701 * 114.00524 * 269.97731 * 5 4 3 33 33 H 1.08995 * 110.65028 * 259.40984 * 12 11 9 34 34 H 1.09003 * 110.65044 * 22.34016 * 12 11 9 35 35 H 1.08996 * 110.76220 * 278.67734 * 13 12 11 36 36 H 1.09007 * 110.75627 * 155.30284 * 13 12 11 37 37 H 1.08996 * 109.97370 * 86.02420 * 15 11 9 38 38 H 1.09001 * 110.00585 * 324.76724 * 15 11 9 39 39 H 1.09003 * 109.45003 * 61.69379 * 16 14 13 40 40 H 1.08993 * 109.44852 * 301.74892 * 16 14 13 41 41 H 1.09001 * 109.50324 * 59.44503 * 17 16 14 42 42 H 1.09004 * 109.49891 * 179.55455 * 17 16 14 43 43 H 1.08997 * 109.56726 * 174.88997 * 18 17 16 44 44 H 1.08999 * 109.57253 * 295.24914 * 18 17 16 45 45 H 0.96999 * 120.00023 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.57949 * 172.57800 * 28 19 18 47 47 H 1.08993 * 109.58641 * 292.99639 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0774 0.0000 4 6 3.5531 0.7092 -0.0062 5 8 4.6149 1.5463 -0.0125 6 7 3.6181 -0.6386 -0.0049 7 1 4.4243 -1.1781 -0.0089 8 6 2.3110 -1.1059 0.0026 9 6 1.8792 -2.5046 0.0064 10 8 0.7002 -2.7772 0.1388 11 7 2.7869 -3.4904 -0.1368 12 6 2.5253 -4.9487 -0.1530 13 6 3.4919 -5.4727 -1.2461 14 6 4.7406 -4.5911 -1.0464 15 6 4.2449 -3.3380 -0.3100 16 6 5.7725 -5.3298 -0.2008 17 6 6.9896 -4.4287 0.0266 18 6 7.6137 -4.0704 -1.3257 19 7 6.5815 -3.4698 -2.1818 20 6 6.7810 -2.2461 -2.7630 21 1 7.4278 -1.5223 -2.2894 22 6 6.1519 -1.9357 -3.9608 23 7 5.6995 -2.8989 -4.7354 24 14 5.9473 -0.1511 -4.4733 25 1 6.5377 0.7326 -3.4362 26 1 6.6393 0.0746 -5.7677 27 1 4.5026 0.1582 -4.6239 28 6 5.3299 -4.2096 -2.4014 29 1 -0.3634 0.0023 1.0276 30 1 -0.3634 0.8887 -0.5159 31 1 -0.3633 -0.8913 -0.5118 32 1 4.9195 1.7887 -0.8977 33 1 2.7617 -5.3924 0.8141 34 1 1.4889 -5.1503 -0.4241 35 1 3.0688 -5.3241 -2.2395 36 1 3.7302 -6.5233 -1.0797 37 1 4.7295 -3.2621 0.6633 38 1 4.4590 -2.4487 -0.9028 39 1 6.0842 -6.2367 -0.7189 40 1 5.3319 -5.5941 0.7604 41 1 6.6774 -3.5172 0.5363 42 1 7.7228 -4.9551 0.6377 43 1 8.4242 -3.3572 -1.1762 44 1 8.0014 -4.9723 -1.7994 45 1 5.2596 -2.6820 -5.5722 46 1 4.6237 -3.5801 -2.9429 47 1 5.5350 -5.1117 -2.9778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040250571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:45 Heat of formation + Delta-G solvation = -6.173504 kcal Electronic energy + Delta-G solvation = -31345.499854 eV Core-core repulsion = 27336.497079 eV Total energy + Delta-G solvation = -4009.002775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.46145 -41.37883 -39.73042 -38.42115 -37.32417 -35.01032 -34.47243 -32.97955 -31.95720 -31.73802 -30.34835 -28.46762 -27.34478 -26.80931 -24.81935 -23.96052 -23.42339 -22.62181 -21.57353 -20.97507 -20.16905 -19.44763 -18.66763 -18.38392 -17.74791 -17.05886 -16.95013 -16.82276 -16.38882 -15.78953 -15.63597 -15.41914 -15.03781 -14.80520 -14.56769 -14.46499 -14.32362 -13.85400 -13.64637 -13.62801 -13.40563 -13.29150 -13.21933 -12.99347 -12.94240 -12.86334 -12.62019 -12.31309 -12.17071 -11.98158 -11.89474 -11.59915 -11.40222 -11.23611 -11.13455 -11.03534 -10.96396 -10.58438 -9.95372 -9.45444 -8.69265 -7.92091 -5.33657 0.00312 1.25158 1.37079 1.40308 1.49345 1.53125 1.81480 2.10631 2.44988 2.75316 3.22372 3.32230 3.47586 3.65476 3.72696 3.88742 3.90463 3.98539 4.20871 4.28229 4.33278 4.41269 4.43723 4.49064 4.58929 4.77549 4.78600 4.81181 4.86664 4.90874 4.93888 4.94926 5.06585 5.10518 5.14994 5.21954 5.32715 5.35710 5.41251 5.46286 5.56855 5.62916 5.65199 5.71396 6.28237 6.34996 6.49759 6.60645 6.90535 7.11670 7.84847 8.37367 9.13817 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.006540 C = 0.004710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.592837 B = 4280.535771 C = 5943.288518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.098 3.902 3 N -0.512 5.512 4 C 0.413 3.587 5 O -0.442 6.442 6 N -0.547 5.547 7 H 0.432 0.568 8 C -0.096 4.096 9 C 0.612 3.388 10 O -0.552 6.552 11 N -0.619 5.619 12 C 0.111 3.889 13 C -0.119 4.119 14 C -0.082 4.082 15 C 0.113 3.887 16 C -0.091 4.091 17 C -0.128 4.128 18 C 0.137 3.863 19 N -0.605 5.605 20 C -0.252 4.252 21 H 0.072 0.928 22 C -0.044 4.044 23 N -0.928 5.928 24 Si 0.938 3.062 25 H -0.247 1.247 26 H -0.300 1.300 27 H -0.302 1.302 28 C 0.200 3.800 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.426 0.574 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.011 0.989 45 H 0.245 0.755 46 H 0.042 0.958 47 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 -2.468 11.891 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.037 4.037 3 N -0.244 5.244 4 C 0.111 3.889 5 O -0.246 6.246 6 N -0.169 5.169 7 H 0.278 0.722 8 C -0.211 4.211 9 C 0.402 3.598 10 O -0.431 6.431 11 N -0.352 5.352 12 C -0.010 4.010 13 C -0.157 4.157 14 C -0.084 4.084 15 C -0.010 4.010 16 C -0.129 4.129 17 C -0.167 4.167 18 C 0.011 3.989 19 N -0.328 5.328 20 C -0.382 4.382 21 H 0.089 0.911 22 C -0.240 4.240 23 N -0.574 5.574 24 Si 0.767 3.233 25 H -0.170 1.170 26 H -0.227 1.227 27 H -0.230 1.230 28 C 0.074 3.926 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.288 0.712 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -3.595 -1.681 12.430 13.048 hybrid contribution 1.107 0.106 -1.838 2.148 sum -2.488 -1.575 10.592 10.994 Atomic orbital electron populations 1.20302 0.84555 1.03765 1.03978 1.21354 0.97916 0.85810 0.98658 1.70240 0.99207 1.30757 1.24194 1.20357 0.87676 0.79356 1.01519 1.84735 1.42564 1.60999 1.36309 1.44416 1.09193 1.08093 1.55219 0.72159 1.20772 0.83661 0.95115 1.21555 1.16303 0.84646 0.82214 0.76637 1.90783 1.16380 1.83010 1.52939 1.48869 1.08010 1.07653 1.70664 1.22658 1.00511 0.77680 1.00170 1.22731 0.94026 1.00704 0.98262 1.21590 0.95825 0.93837 0.97192 1.22374 0.78796 0.99699 1.00140 1.21413 0.94449 0.97656 0.99343 1.21975 0.97954 0.99646 0.97079 1.21108 0.91133 0.95691 0.90924 1.44348 1.13667 1.19272 1.55543 1.19455 1.26841 0.90975 1.00924 0.91082 1.25632 1.02897 0.99825 0.95666 1.70188 1.43801 1.31790 1.11622 0.85645 0.76602 0.82607 0.78487 1.16969 1.22720 1.22959 1.20426 0.87520 0.93365 0.91248 0.89238 0.89712 0.90140 0.71207 0.88166 0.90006 0.92752 0.87117 0.89722 0.92198 0.91583 0.89808 0.92265 0.89777 0.92958 0.97122 0.94549 0.93984 0.98513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 9.80 71.24 0.70 -1.16 16 2 C 0.10 3.25 7.14 41.99 0.30 3.55 16 3 N -0.51 -17.40 11.22 -301.68 -3.38 -20.79 16 4 C 0.41 13.05 9.43 179.99 1.70 14.74 16 5 O -0.44 -11.57 13.62 -84.92 -1.16 -12.73 16 6 N -0.55 -17.15 5.53 -300.13 -1.66 -18.80 16 7 H 0.43 12.80 5.52 -92.71 -0.51 12.28 16 8 C -0.10 -3.23 6.87 39.80 0.27 -2.95 16 9 C 0.61 20.77 7.85 86.36 0.68 21.44 16 10 O -0.55 -20.17 15.11 -4.45 -0.07 -20.24 16 11 N -0.62 -18.53 3.30 -814.63 -2.69 -21.22 16 12 C 0.11 2.69 7.09 86.76 0.62 3.30 16 13 C -0.12 -3.03 6.15 31.68 0.19 -2.84 16 14 C -0.08 -2.42 0.61 -51.90 -0.03 -2.45 16 15 C 0.11 3.30 4.17 86.36 0.36 3.66 16 16 C -0.09 -2.15 4.40 30.47 0.13 -2.01 16 17 C -0.13 -3.21 5.87 30.70 0.18 -3.03 16 18 C 0.14 4.74 6.50 86.36 0.56 5.30 16 19 N -0.61 -25.95 2.76 -699.95 -1.93 -27.88 16 20 C -0.25 -12.15 9.56 84.03 0.80 -11.35 16 21 H 0.07 3.32 7.91 -2.91 -0.02 3.29 16 22 C -0.04 -2.27 4.83 84.86 0.41 -1.86 16 23 N -0.93 -52.14 11.42 21.65 0.25 -51.89 16 24 Si 0.94 41.38 29.60 68.60 2.03 43.41 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 28 C 0.20 8.36 3.61 86.14 0.31 8.67 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 2.32 6.64 -2.38 -0.02 2.30 16 32 H 0.43 7.85 9.06 -74.06 -0.67 7.18 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.05 7.85 -2.39 -0.02 2.03 16 35 H 0.05 1.66 7.84 -2.39 -0.02 1.64 16 36 H 0.11 2.18 7.83 -2.38 -0.02 2.16 16 37 H 0.08 2.14 6.54 -2.39 -0.02 2.12 16 38 H 0.06 2.11 5.10 -2.39 -0.01 2.10 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.47 6.65 -2.39 -0.02 1.46 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.05 1.80 7.93 -2.39 -0.02 1.78 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 46 H 0.04 2.10 6.20 -2.39 -0.01 2.09 16 47 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -66.37 366.27 -1.58 -67.95 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -0.16 Total: 29.15 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 7.18 Total: 33.02 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -9.41 Total: -140.58 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.22 Total: -32.96 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -66.37 -1.58 -67.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040250571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.781 kcal (2) G-P(sol) polarization free energy of solvation -66.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds