Wall clock time and date at job start Tue Mar 31 2020 17:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 119.14720 * 2 1 4 4 C 1.32367 * 120.60803 * 180.26700 * 3 2 1 5 5 C 1.47496 * 120.50870 * 179.71552 * 4 3 2 6 6 O 1.21596 * 119.99967 * 264.21636 * 5 4 3 7 7 N 1.34777 * 119.99981 * 84.22058 * 5 4 3 8 8 C 1.46925 * 120.63043 * 354.46847 * 7 5 4 9 9 C 1.53190 * 108.77852 * 126.41084 * 8 7 5 10 10 C 1.53046 * 109.31444 * 54.63395 * 9 8 7 11 11 H 1.09001 * 109.45423 * 58.63910 * 10 9 8 12 12 N 1.46490 * 109.46529 * 178.61332 * 10 9 8 13 13 C 1.36940 * 120.00452 * 275.03105 * 12 10 9 14 14 H 1.08000 * 119.99489 * 0.02562 * 13 12 10 15 15 C 1.38810 * 120.00305 * 179.97438 * 13 12 10 16 16 N 1.31618 * 119.99918 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99984 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47076 * 240.00042 * 17 15 13 20 20 H 1.48504 * 109.46698 * 119.99989 * 17 15 13 21 21 C 1.53039 * 109.52345 * 298.63358 * 10 9 8 22 22 C 1.46926 * 120.63093 * 174.48509 * 7 5 4 23 23 H 1.09003 * 109.58309 * 113.65942 * 22 7 5 24 24 C 1.52998 * 109.58745 * 353.37674 * 22 7 5 25 25 C 1.46678 * 118.97998 * 359.44426 * 4 3 2 26 26 O 1.21852 * 120.78503 * 180.25488 * 25 4 3 27 27 N 1.35152 * 118.42945 * 0.27396 * 25 4 3 28 28 H 0.97001 * 120.36787 * 180.02562 * 27 25 4 29 29 C 1.34893 * 119.26623 * 0.02562 * 27 25 4 30 30 C 1.50706 * 119.50180 * 179.97438 * 29 27 25 31 31 H 1.08993 * 109.46903 * 270.30019 * 1 2 3 32 32 H 1.09005 * 109.46434 * 30.29500 * 1 2 3 33 33 H 1.08995 * 109.47049 * 150.29705 * 1 2 3 34 34 H 1.09000 * 109.58734 * 6.62729 * 8 7 5 35 35 H 1.09003 * 109.58902 * 246.19840 * 8 7 5 36 36 H 1.09001 * 109.50343 * 294.68666 * 9 8 7 37 37 H 1.08994 * 109.50188 * 174.58633 * 9 8 7 38 38 H 0.96998 * 119.99755 * 95.02812 * 12 10 9 39 39 H 0.97000 * 120.00056 * 0.02562 * 16 15 13 40 40 H 1.09008 * 109.49331 * 181.31869 * 21 10 9 41 41 H 1.08997 * 109.49807 * 301.41194 * 21 10 9 42 42 H 1.09001 * 109.46755 * 67.92212 * 24 22 7 43 43 H 1.09000 * 109.47004 * 187.91586 * 24 22 7 44 44 H 1.08996 * 109.47281 * 307.91822 * 24 22 7 45 45 H 1.09001 * 109.46934 * 359.97438 * 30 29 27 46 46 H 1.08992 * 109.47366 * 120.00253 * 30 29 27 47 47 H 1.09005 * 109.46814 * 240.00160 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1880 -0.0053 5 6 4.1901 2.4775 -0.0116 6 8 4.5739 2.9546 -1.0621 7 7 4.4191 3.1268 1.1470 8 6 3.8582 2.6260 2.4093 9 6 4.9935 2.4705 3.4260 10 6 5.7434 3.7984 3.5545 11 1 5.0496 4.5782 3.8688 12 7 6.8090 3.6629 4.5505 13 6 6.5310 3.8413 5.8794 14 1 5.5260 4.0816 6.1933 15 6 7.5407 3.7123 6.8232 16 7 8.7653 3.4180 6.4408 17 14 7.1615 3.9565 8.6359 18 1 5.7209 4.2764 8.8016 19 1 7.9817 5.0747 9.1670 20 1 7.4805 2.7116 9.3803 21 6 6.3539 4.1739 2.2023 22 6 5.2340 4.3490 1.1718 23 1 4.6098 5.1989 1.4479 24 6 5.8427 4.5878 -0.2115 25 6 4.2171 -0.0765 0.0012 26 8 5.4356 -0.0838 0.0013 27 7 3.5184 -1.2334 0.0068 28 1 3.9813 -2.0858 0.0116 29 6 2.1702 -1.1896 0.0057 30 6 1.3859 -2.4764 0.0113 31 1 -0.3633 0.0054 1.0276 32 1 -0.3632 0.8874 -0.5185 33 1 -0.3633 -0.8926 -0.5092 34 1 3.3841 1.6592 2.2404 35 1 3.1223 3.3349 2.7889 36 1 5.6813 1.6956 3.0877 37 1 4.5787 2.1918 4.3947 38 1 7.7116 3.4467 4.2686 39 1 8.9622 3.2916 5.4995 40 1 6.9075 5.1078 2.2999 41 1 7.0288 3.3828 1.8756 42 1 5.0515 4.8385 -0.9181 43 1 6.5558 5.4104 -0.1576 44 1 6.3543 3.6847 -0.5442 45 1 2.0743 -3.3215 0.0154 46 1 0.7574 -2.5150 0.9009 47 1 0.7586 -2.5235 -0.8790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044644283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:28 Heat of formation + Delta-G solvation = -4.790066 kcal Electronic energy + Delta-G solvation = -29902.349417 eV Core-core repulsion = 25893.406632 eV Total energy + Delta-G solvation = -4008.942785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10229 -40.20652 -38.24715 -37.43097 -35.82374 -34.69556 -33.58513 -32.50592 -32.03899 -29.65297 -28.98491 -27.30107 -26.71455 -25.01752 -24.18679 -23.50096 -22.96696 -21.80437 -20.43453 -19.50640 -19.01419 -18.20279 -17.26011 -16.94908 -16.56493 -16.20384 -15.91923 -15.09502 -14.68029 -14.54605 -14.43683 -14.23402 -14.05614 -13.66619 -13.60333 -13.54009 -13.48336 -13.31697 -13.09472 -12.73816 -12.44350 -12.24376 -12.08431 -11.95789 -11.68649 -11.63726 -11.56971 -11.36274 -10.81231 -10.76252 -10.52204 -10.39683 -10.08796 -10.04478 -9.92366 -9.23462 -9.07296 -8.89201 -8.43561 -8.30505 -7.02113 -6.08371 -3.08349 -0.02260 1.31676 1.95146 2.56394 2.85534 3.10981 3.51627 3.58656 3.67720 3.70605 3.77694 4.00109 4.27199 4.56821 4.66852 4.69314 4.84988 5.00827 5.08197 5.11434 5.15085 5.24450 5.26211 5.34404 5.47059 5.49724 5.57975 5.65915 5.68581 5.82053 5.89653 5.95693 5.99929 6.02646 6.13477 6.18934 6.35135 6.42427 6.45227 6.52020 6.74717 6.87716 7.01688 7.22235 7.39363 7.45237 7.82849 8.14882 8.77558 9.24762 10.11239 10.26865 11.40164 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003232 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.809323 B = 8662.148225 C = 9628.120594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.026 4.026 3 N -0.356 5.356 4 C 0.027 3.973 5 C 0.601 3.399 6 O -0.517 6.517 7 N -0.585 5.585 8 C 0.115 3.885 9 C -0.151 4.151 10 C 0.185 3.815 11 H 0.050 0.950 12 N -0.735 5.735 13 C -0.331 4.331 14 H 0.065 0.935 15 C -0.046 4.046 16 N -0.945 5.945 17 Si 1.085 2.915 18 H -0.295 1.295 19 H -0.293 1.293 20 H -0.294 1.294 21 C -0.137 4.137 22 C 0.150 3.850 23 H 0.076 0.924 24 C -0.139 4.139 25 C 0.495 3.505 26 O -0.502 6.502 27 N -0.583 5.583 28 H 0.422 0.578 29 C 0.139 3.861 30 C -0.125 4.125 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.367 0.633 39 H 0.256 0.744 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.813 -11.295 -15.095 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 N -0.071 5.071 4 C -0.143 4.143 5 C 0.386 3.614 6 O -0.392 6.392 7 N -0.318 5.318 8 C -0.008 4.008 9 C -0.192 4.192 10 C 0.075 3.925 11 H 0.068 0.932 12 N -0.377 5.377 13 C -0.462 4.462 14 H 0.083 0.917 15 C -0.244 4.244 16 N -0.590 5.590 17 Si 0.916 3.084 18 H -0.221 1.221 19 H -0.220 1.220 20 H -0.221 1.221 21 C -0.176 4.176 22 C 0.048 3.952 23 H 0.094 0.906 24 C -0.196 4.196 25 C 0.287 3.713 26 O -0.375 6.375 27 N -0.219 5.219 28 H 0.262 0.738 29 C 0.025 3.975 30 C -0.183 4.183 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.200 0.800 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.979 -10.176 -14.008 25.689 hybrid contribution 0.189 -1.525 -1.454 2.115 sum -18.790 -11.700 -15.462 27.000 Atomic orbital electron populations 1.20526 0.86867 1.03640 1.03162 1.20154 0.97929 0.85510 1.11521 1.67595 1.07607 1.29326 1.02554 1.23926 0.89726 0.93731 1.06960 1.17019 0.78521 0.81729 0.84169 1.90860 1.51055 1.65652 1.31670 1.48069 1.50386 1.26581 1.06771 1.21782 0.96623 0.98840 0.83585 1.22679 0.96959 1.01802 0.97801 1.20086 0.90873 0.93688 0.87832 0.93174 1.42448 1.06643 1.85514 1.03055 1.20096 0.96747 1.45421 0.83890 0.91673 1.25760 0.93289 1.00443 1.04866 1.70800 1.19570 1.51024 1.17628 0.83156 0.74094 0.76419 0.74706 1.22133 1.22021 1.22108 1.22330 0.97453 1.02631 0.95187 1.21359 0.91674 0.85031 0.97184 0.90557 1.22211 1.01075 1.01696 0.94663 1.19155 0.88380 0.84110 0.79609 1.91047 1.11646 1.85692 1.49109 1.43620 1.06431 1.11843 1.59982 0.73762 1.21484 0.83393 0.99007 0.93637 1.21179 1.00452 0.91382 1.05266 0.90568 0.90225 0.90722 0.91624 0.90826 0.92261 0.90616 0.79990 0.93237 0.90413 0.91658 0.90813 0.93332 0.91416 0.90335 0.88117 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 9.65 36.01 0.35 -0.09 16 2 C -0.03 -0.23 6.70 -83.18 -0.56 -0.79 16 3 N -0.36 -4.53 10.22 -4.84 -0.05 -4.58 16 4 C 0.03 0.41 4.69 -80.46 -0.38 0.04 16 5 C 0.60 10.41 6.85 -12.49 -0.09 10.33 16 6 O -0.52 -9.92 12.67 5.28 0.07 -9.86 16 7 N -0.59 -9.58 2.97 -166.46 -0.49 -10.07 16 8 C 0.12 1.77 6.35 -3.71 -0.02 1.74 16 9 C -0.15 -2.80 5.66 -26.61 -0.15 -2.95 16 10 C 0.19 3.77 2.73 -67.89 -0.19 3.58 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 N -0.74 -18.65 5.12 -53.39 -0.27 -18.92 16 13 C -0.33 -9.28 9.93 -15.06 -0.15 -9.43 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 16 N -0.94 -29.60 13.70 55.49 0.76 -28.84 16 17 Si 1.08 26.14 29.92 -169.99 -5.09 21.05 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C -0.14 -2.46 4.83 -26.61 -0.13 -2.59 16 22 C 0.15 2.40 3.49 -67.60 -0.24 2.17 16 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 24 C -0.14 -2.20 7.61 37.16 0.28 -1.91 16 25 C 0.49 7.14 7.93 -12.68 -0.10 7.04 16 26 O -0.50 -9.16 17.57 5.05 0.09 -9.07 16 27 N -0.58 -5.27 5.29 -9.45 -0.05 -5.32 16 28 H 0.42 2.60 8.64 -40.82 -0.35 2.25 16 29 C 0.14 0.95 6.78 -81.98 -0.56 0.39 16 30 C -0.13 -0.24 8.83 36.01 0.32 0.08 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.18 6.43 -51.93 -0.33 -0.16 16 34 H 0.07 0.95 6.26 -51.93 -0.33 0.62 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.37 9.76 6.63 -40.82 -0.27 9.49 16 39 H 0.26 7.96 6.77 -40.82 -0.28 7.68 16 40 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.19 6.70 -51.93 -0.35 0.84 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.21 6.79 -51.93 -0.35 0.86 16 45 H 0.08 0.06 7.90 -51.93 -0.41 -0.35 16 46 H 0.10 0.09 8.09 -51.93 -0.42 -0.33 16 47 H 0.10 0.05 7.37 -51.93 -0.38 -0.33 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -37.60 377.07 -7.96 -45.55 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.90 Total: 8.19 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.70 Total: 6.17 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -0.11 Total: -67.72 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.60 -7.96 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044644283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.763 kcal (2) G-P(sol) polarization free energy of solvation -37.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds