Wall clock time and date at job start Tue Mar 31 2020 17:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32165 * 119.14720 * 2 1 4 4 C 1.32367 * 120.60803 * 180.26700 * 3 2 1 5 5 C 1.47496 * 120.50870 * 179.71552 * 4 3 2 6 6 O 1.21596 * 119.99967 * 264.21636 * 5 4 3 7 7 N 1.34777 * 119.99981 * 84.22058 * 5 4 3 8 8 C 1.46925 * 120.63043 * 354.46847 * 7 5 4 9 9 C 1.53190 * 108.77852 * 126.41084 * 8 7 5 10 10 C 1.53046 * 109.31444 * 54.63395 * 9 8 7 11 11 H 1.09001 * 109.45423 * 58.63910 * 10 9 8 12 12 N 1.46490 * 109.46529 * 178.61332 * 10 9 8 13 13 C 1.36940 * 120.00452 * 275.03105 * 12 10 9 14 14 H 1.08000 * 119.99489 * 0.02562 * 13 12 10 15 15 C 1.38810 * 120.00305 * 179.97438 * 13 12 10 16 16 N 1.31618 * 119.99918 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99984 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47076 * 240.00042 * 17 15 13 20 20 H 1.48504 * 109.46698 * 119.99989 * 17 15 13 21 21 C 1.53039 * 109.52345 * 298.63358 * 10 9 8 22 22 C 1.46926 * 120.63093 * 174.48509 * 7 5 4 23 23 H 1.09003 * 109.58309 * 113.65942 * 22 7 5 24 24 C 1.52998 * 109.58745 * 353.37674 * 22 7 5 25 25 C 1.46678 * 118.97998 * 359.44426 * 4 3 2 26 26 O 1.21852 * 120.78503 * 180.25488 * 25 4 3 27 27 N 1.35152 * 118.42945 * 0.27396 * 25 4 3 28 28 H 0.97001 * 120.36787 * 180.02562 * 27 25 4 29 29 C 1.34893 * 119.26623 * 0.02562 * 27 25 4 30 30 C 1.50706 * 119.50180 * 179.97438 * 29 27 25 31 31 H 1.08993 * 109.46903 * 270.30019 * 1 2 3 32 32 H 1.09005 * 109.46434 * 30.29500 * 1 2 3 33 33 H 1.08995 * 109.47049 * 150.29705 * 1 2 3 34 34 H 1.09000 * 109.58734 * 6.62729 * 8 7 5 35 35 H 1.09003 * 109.58902 * 246.19840 * 8 7 5 36 36 H 1.09001 * 109.50343 * 294.68666 * 9 8 7 37 37 H 1.08994 * 109.50188 * 174.58633 * 9 8 7 38 38 H 0.96998 * 119.99755 * 95.02812 * 12 10 9 39 39 H 0.97000 * 120.00056 * 0.02562 * 16 15 13 40 40 H 1.09008 * 109.49331 * 181.31869 * 21 10 9 41 41 H 1.08997 * 109.49807 * 301.41194 * 21 10 9 42 42 H 1.09001 * 109.46755 * 67.92212 * 24 22 7 43 43 H 1.09000 * 109.47004 * 187.91586 * 24 22 7 44 44 H 1.08996 * 109.47281 * 307.91822 * 24 22 7 45 45 H 1.09001 * 109.46934 * 359.97438 * 30 29 27 46 46 H 1.08992 * 109.47366 * 120.00253 * 30 29 27 47 47 H 1.09005 * 109.46814 * 240.00160 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1543 0.0000 4 6 3.4739 1.1880 -0.0053 5 6 4.1901 2.4775 -0.0116 6 8 4.5739 2.9546 -1.0621 7 7 4.4191 3.1268 1.1470 8 6 3.8582 2.6260 2.4093 9 6 4.9935 2.4705 3.4260 10 6 5.7434 3.7984 3.5545 11 1 5.0496 4.5782 3.8688 12 7 6.8090 3.6629 4.5505 13 6 6.5310 3.8413 5.8794 14 1 5.5260 4.0816 6.1933 15 6 7.5407 3.7123 6.8232 16 7 8.7653 3.4180 6.4408 17 14 7.1615 3.9565 8.6359 18 1 5.7209 4.2764 8.8016 19 1 7.9817 5.0747 9.1670 20 1 7.4805 2.7116 9.3803 21 6 6.3539 4.1739 2.2023 22 6 5.2340 4.3490 1.1718 23 1 4.6098 5.1989 1.4479 24 6 5.8427 4.5878 -0.2115 25 6 4.2171 -0.0765 0.0012 26 8 5.4356 -0.0838 0.0013 27 7 3.5184 -1.2334 0.0068 28 1 3.9813 -2.0858 0.0116 29 6 2.1702 -1.1896 0.0057 30 6 1.3859 -2.4764 0.0113 31 1 -0.3633 0.0054 1.0276 32 1 -0.3632 0.8874 -0.5185 33 1 -0.3633 -0.8926 -0.5092 34 1 3.3841 1.6592 2.2404 35 1 3.1223 3.3349 2.7889 36 1 5.6813 1.6956 3.0877 37 1 4.5787 2.1918 4.3947 38 1 7.7116 3.4467 4.2686 39 1 8.9622 3.2916 5.4995 40 1 6.9075 5.1078 2.2999 41 1 7.0288 3.3828 1.8756 42 1 5.0515 4.8385 -0.9181 43 1 6.5558 5.4104 -0.1576 44 1 6.3543 3.6847 -0.5442 45 1 2.0743 -3.3215 0.0154 46 1 0.7574 -2.5150 0.9009 47 1 0.7586 -2.5235 -0.8790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044644283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:27 Heat of formation + Delta-G solvation = -33.952297 kcal Electronic energy + Delta-G solvation = -29903.613986 eV Core-core repulsion = 25893.406632 eV Total energy + Delta-G solvation = -4010.207354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.00755 -41.47875 -39.24645 -38.91030 -36.71424 -36.50710 -34.45128 -33.88857 -33.63784 -30.95624 -29.99324 -28.56816 -27.77872 -25.92045 -25.66147 -24.86193 -24.44124 -23.01914 -21.90216 -20.76919 -19.89141 -19.40676 -19.14920 -18.06393 -17.59760 -17.26788 -17.06934 -16.81012 -16.18538 -15.89831 -15.55918 -15.40561 -15.12884 -15.01675 -14.85105 -14.83335 -14.18404 -14.08655 -13.89809 -13.87103 -13.54718 -13.38257 -13.25225 -12.91534 -12.81992 -12.74994 -12.68715 -12.50065 -12.44769 -12.40834 -12.15501 -12.06736 -11.84422 -11.71461 -11.24969 -10.96138 -10.93208 -10.34317 -9.78119 -9.16331 -9.10494 -8.38766 -5.33319 -0.84535 0.39576 0.95852 1.49410 1.58388 1.70467 1.76986 1.81709 2.19915 2.71308 2.79055 3.04441 3.38931 3.40246 3.53747 3.57495 3.72875 3.75610 3.84915 3.94608 4.08684 4.17843 4.38843 4.46993 4.47679 4.52533 4.57788 4.61719 4.66280 4.73314 4.83756 4.87548 4.89035 4.92589 5.02855 5.05274 5.12245 5.17344 5.19125 5.26287 5.34640 5.46158 5.54513 5.60874 6.16742 6.37410 6.48125 6.49108 6.89069 7.07666 7.97364 8.11650 9.12939 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003232 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.809323 B = 8662.148225 C = 9628.120594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.046 4.046 3 N -0.352 5.352 4 C -0.042 4.042 5 C 0.598 3.402 6 O -0.550 6.550 7 N -0.590 5.590 8 C 0.127 3.873 9 C -0.138 4.138 10 C 0.182 3.818 11 H 0.056 0.944 12 N -0.750 5.750 13 C -0.325 4.325 14 H 0.073 0.927 15 C -0.109 4.109 16 N -0.979 5.979 17 Si 1.134 2.866 18 H -0.267 1.267 19 H -0.293 1.293 20 H -0.293 1.293 21 C -0.125 4.125 22 C 0.151 3.849 23 H 0.099 0.901 24 C -0.127 4.127 25 C 0.487 3.513 26 O -0.562 6.562 27 N -0.564 5.564 28 H 0.437 0.563 29 C 0.180 3.820 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.356 0.644 39 H 0.242 0.758 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.098 0.902 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.171 -13.193 -14.881 31.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.175 4.175 3 N -0.067 5.067 4 C -0.206 4.206 5 C 0.384 3.616 6 O -0.428 6.428 7 N -0.322 5.322 8 C 0.004 3.996 9 C -0.179 4.179 10 C 0.073 3.927 11 H 0.074 0.926 12 N -0.390 5.390 13 C -0.456 4.456 14 H 0.091 0.909 15 C -0.300 4.300 16 N -0.628 5.628 17 Si 0.959 3.041 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.220 1.220 21 C -0.164 4.164 22 C 0.049 3.951 23 H 0.117 0.883 24 C -0.184 4.184 25 C 0.282 3.718 26 O -0.442 6.442 27 N -0.198 5.198 28 H 0.281 0.719 29 C 0.063 3.937 30 C -0.185 4.185 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.187 0.813 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.116 0.884 46 H 0.146 0.854 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.374 -12.061 -13.827 29.716 hybrid contribution 1.273 -1.182 -1.628 2.381 sum -22.102 -13.243 -15.455 30.045 Atomic orbital electron populations 1.20697 0.83719 1.05062 1.04431 1.21006 0.99850 0.85064 1.11545 1.67525 1.06626 1.31719 1.00860 1.23191 0.90435 0.92663 1.14329 1.17424 0.78059 0.82432 0.83676 1.90807 1.52426 1.66875 1.32655 1.48145 1.50357 1.26613 1.07067 1.21706 0.95404 1.00263 0.82208 1.22438 0.97347 0.99637 0.98438 1.20306 0.89976 0.94663 0.87738 0.92564 1.42692 1.07311 1.85657 1.03367 1.20453 0.96832 1.43261 0.85036 0.90946 1.27252 0.92871 1.00680 1.09147 1.70928 1.21082 1.54011 1.16741 0.82544 0.75475 0.76175 0.69946 1.19127 1.21973 1.22048 1.22179 0.97798 1.01837 0.94541 1.21380 0.91334 0.85961 0.96452 0.88286 1.22047 1.01053 1.00911 0.94366 1.19134 0.87785 0.85283 0.79563 1.91003 1.13829 1.86597 1.52768 1.43614 1.07550 1.11288 1.57347 0.71901 1.22458 0.82301 1.01106 0.87825 1.21556 1.00772 0.88496 1.07650 0.89269 0.91294 0.86934 0.90451 0.88580 0.94879 0.91278 0.81291 0.94764 0.90154 0.93837 0.91034 0.91567 0.94216 0.88365 0.85442 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.65 71.24 0.69 0.21 16 2 C -0.05 -0.67 6.70 42.03 0.28 -0.39 16 3 N -0.35 -8.61 10.22 -169.24 -1.73 -10.34 16 4 C -0.04 -1.30 4.69 43.71 0.20 -1.09 16 5 C 0.60 21.76 6.85 86.68 0.59 22.35 16 6 O -0.55 -22.48 12.67 -4.02 -0.05 -22.53 16 7 N -0.59 -19.85 2.97 -798.80 -2.37 -22.23 16 8 C 0.13 3.89 6.35 86.36 0.55 4.44 16 9 C -0.14 -5.22 5.66 30.67 0.17 -5.05 16 10 C 0.18 7.52 2.73 45.02 0.12 7.65 16 11 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 12 N -0.75 -39.17 5.12 -322.82 -1.65 -40.82 16 13 C -0.32 -18.36 9.93 84.03 0.83 -17.52 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.11 -6.42 5.50 84.86 0.47 -5.96 16 16 N -0.98 -63.09 13.70 21.65 0.30 -62.79 16 17 Si 1.13 52.54 29.92 68.60 2.05 54.59 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 C -0.12 -4.64 4.83 30.67 0.15 -4.50 16 22 C 0.15 4.94 3.49 44.97 0.16 5.09 16 23 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 24 C -0.13 -4.16 7.61 71.98 0.55 -3.61 16 25 C 0.49 14.47 7.93 86.39 0.68 15.15 16 26 O -0.56 -22.09 17.57 -4.84 -0.08 -22.18 16 27 N -0.56 -9.17 5.29 -301.75 -1.60 -10.76 16 28 H 0.44 4.44 8.64 -92.71 -0.80 3.63 16 29 C 0.18 1.75 6.78 41.62 0.28 2.03 16 30 C -0.13 0.33 8.83 71.24 0.63 0.96 16 31 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.11 -0.20 6.43 -2.39 -0.02 -0.21 16 34 H 0.08 2.22 6.26 -2.39 -0.01 2.21 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.36 19.93 6.63 -92.71 -0.61 19.32 16 39 H 0.24 15.73 6.77 -92.71 -0.63 15.10 16 40 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 2.39 6.70 -2.39 -0.02 2.37 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.52 6.79 -2.39 -0.02 1.50 16 45 H 0.10 -0.49 7.90 -2.39 -0.02 -0.51 16 46 H 0.13 -0.72 8.09 -2.39 -0.02 -0.74 16 47 H 0.13 -0.85 7.37 -2.38 -0.02 -0.86 16 Total: -1.00 -89.28 377.07 0.97 -88.31 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.26 Total: 28.98 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 6.36 Total: 19.77 kcal Atomic # 7 Polarization: -139.88 SS G_CDS: -7.05 Total: -146.94 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.14 Total: -44.71 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 2.05 Total: 54.59 kcal Total: -89.28 0.97 -88.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044644283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.356 kcal (2) G-P(sol) polarization free energy of solvation -89.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds