Wall clock time and date at job start Tue Mar 31 2020 19:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33222 * 126.02115 * 2 1 4 4 C 1.31537 * 109.76709 * 180.02562 * 3 2 1 5 5 O 1.35195 * 125.49427 * 179.97438 * 4 3 2 6 6 N 1.34948 * 109.00973 * 359.75972 * 4 3 2 7 7 H 0.96995 * 126.54612 * 180.26945 * 6 4 3 8 8 C 1.36719 * 126.01962 * 180.02562 * 2 1 3 9 9 C 1.46380 * 126.82455 * 359.95656 * 8 2 1 10 10 O 1.21737 * 120.00175 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00174 * 179.97438 * 9 8 2 12 12 C 1.46500 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46900 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.43554 * 59.82854 * 13 12 11 15 15 C 1.53153 * 109.43487 * 179.69415 * 13 12 11 16 16 C 1.54245 * 108.84149 * 66.08408 * 15 13 12 17 17 H 1.09003 * 112.33394 * 187.68952 * 16 15 13 18 18 C 1.54612 * 107.85985 * 312.47604 * 16 15 13 19 19 C 1.53793 * 104.84767 * 88.46883 * 18 16 15 20 20 C 1.54605 * 104.85403 * 0.02562 * 19 18 16 21 21 H 1.09000 * 112.69780 * 146.96041 * 20 19 18 22 22 C 1.53140 * 109.43617 * 299.91976 * 13 12 11 23 23 N 1.48290 * 106.99158 * 64.13340 * 16 15 13 24 24 C 1.36935 * 128.21074 * 107.52883 * 23 16 15 25 25 H 1.07998 * 120.00212 * 154.74284 * 24 23 16 26 26 C 1.38809 * 120.00049 * 334.73788 * 24 23 16 27 27 N 1.31625 * 120.00079 * 354.98212 * 26 24 23 28 28 Si 1.86799 * 120.00272 * 174.97930 * 26 24 23 29 29 H 1.48498 * 109.47293 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47079 * 300.00517 * 28 26 24 31 31 H 1.48496 * 109.47059 * 60.00221 * 28 26 24 32 32 H 1.08999 * 109.47525 * 269.98456 * 1 2 3 33 33 H 1.09008 * 109.47119 * 29.98392 * 1 2 3 34 34 H 1.09003 * 109.46822 * 149.98019 * 1 2 3 35 35 H 0.96701 * 114.00229 * 90.02329 * 5 4 3 36 36 H 0.96996 * 119.99758 * 359.97438 * 11 9 8 37 37 H 1.08991 * 109.47386 * 59.99751 * 12 11 9 38 38 H 1.09004 * 109.47065 * 299.99629 * 12 11 9 39 39 H 1.09004 * 109.57097 * 185.99514 * 15 13 12 40 40 H 1.09007 * 109.56777 * 306.23684 * 15 13 12 41 41 H 1.08997 * 110.38536 * 207.17397 * 18 16 15 42 42 H 1.09000 * 110.38032 * 329.54206 * 18 16 15 43 43 H 1.09001 * 110.43537 * 241.09801 * 19 18 16 44 44 H 1.09003 * 110.24096 * 118.80256 * 19 18 16 45 45 H 1.09005 * 109.57260 * 174.00759 * 22 13 12 46 46 H 1.09000 * 109.67132 * 53.70424 * 22 13 12 47 47 H 0.96998 * 120.00242 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6149 1.5463 -0.0012 6 7 3.6181 -0.6386 0.0044 7 1 4.4242 -1.1780 0.0089 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0002 10 8 0.6923 -2.7751 0.0010 11 7 2.7957 -3.4927 -0.0013 12 6 2.3635 -4.8925 -0.0005 13 6 3.5914 -5.8053 -0.0027 14 1 4.1923 -5.6070 0.8849 15 6 3.1388 -7.2684 0.0059 16 6 2.4195 -7.5751 -1.3237 17 1 1.9558 -8.5616 -1.3258 18 6 1.4049 -6.4386 -1.5871 19 6 2.1996 -5.3721 -2.3594 20 6 3.6234 -5.9592 -2.4944 21 1 4.1130 -5.6660 -3.4231 22 6 4.4278 -5.5312 -1.2558 23 7 3.4241 -7.4257 -2.4042 24 6 4.0214 -8.4088 -3.1472 25 1 4.4023 -8.1847 -4.1327 26 6 4.1374 -9.6932 -2.6338 27 7 3.7636 -9.9437 -1.3969 28 14 4.8238 -11.0661 -3.6983 29 1 4.8432 -12.3319 -2.9220 30 1 3.9679 -11.2360 -4.8998 31 1 6.2056 -10.7221 -4.1195 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3634 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5142 35 1 4.9245 1.7897 0.8820 36 1 3.7413 -3.2771 -0.0026 37 1 1.7641 -5.0883 -0.8895 38 1 1.7666 -5.0880 0.8904 39 1 4.0072 -7.9186 0.1117 40 1 2.4550 -7.4341 0.8385 41 1 0.5755 -6.8030 -2.1931 42 1 1.0379 -6.0315 -0.6450 43 1 2.2256 -4.4372 -1.7995 44 1 1.7598 -5.2136 -3.3441 45 1 5.3552 -6.1020 -1.2079 46 1 4.6567 -4.4674 -1.3188 47 1 3.8443 -10.8414 -1.0382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048536746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:53 Heat of formation + Delta-G solvation = 102.672033 kcal Electronic energy + Delta-G solvation = -30271.287615 eV Core-core repulsion = 26267.004736 eV Total energy + Delta-G solvation = -4004.282879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53910 -41.26588 -38.90027 -37.70341 -34.97021 -33.62826 -32.72298 -31.54093 -31.00881 -30.64362 -29.71696 -27.63286 -26.28303 -23.85793 -23.34728 -22.90369 -21.53546 -20.75291 -20.21471 -19.68547 -19.43236 -18.82444 -18.00279 -17.03037 -16.71926 -16.26548 -15.77189 -15.26558 -14.96527 -14.66364 -14.19804 -14.08452 -13.49078 -13.37072 -13.09966 -12.82556 -12.77073 -12.69912 -12.62167 -12.23604 -12.02934 -11.75999 -11.57537 -11.43679 -11.27443 -10.89290 -10.82954 -10.61043 -10.57933 -10.36036 -10.18899 -10.05418 -9.78076 -9.71535 -9.51564 -9.41335 -9.26229 -8.72502 -8.59303 -8.21376 -6.73690 -5.84729 -3.23442 0.93512 2.07323 2.41914 3.16688 3.21498 3.34804 3.40332 3.40731 3.53124 4.42279 4.49505 4.73036 4.94036 5.16459 5.22334 5.28963 5.38751 5.44070 5.54737 5.66949 5.70038 5.76267 5.77499 5.84229 5.84991 5.99707 6.04113 6.11341 6.23161 6.24034 6.32409 6.35638 6.38411 6.48993 6.57639 6.61151 6.69363 6.81609 6.91290 7.02003 7.07951 7.17706 7.39632 7.50430 7.55441 7.60650 7.72224 8.14657 8.21669 9.08578 9.69721 10.53974 11.29040 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.002842 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.412715 B = 9848.945791 C =10320.382026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.110 3.890 3 N -0.489 5.489 4 C 0.407 3.593 5 O -0.441 6.441 6 N -0.555 5.555 7 H 0.422 0.578 8 C -0.078 4.078 9 C 0.588 3.412 10 O -0.522 6.522 11 N -0.718 5.718 12 C 0.003 3.997 13 C -0.086 4.086 14 H 0.049 0.951 15 C -0.109 4.109 16 C 0.186 3.814 17 H 0.097 0.903 18 C -0.172 4.172 19 C -0.162 4.162 20 C 0.150 3.850 21 H 0.064 0.936 22 C -0.122 4.122 23 N -0.581 5.581 24 C -0.230 4.230 25 H 0.069 0.931 26 C 0.004 3.996 27 N -0.906 5.906 28 Si 0.908 3.092 29 H -0.290 1.290 30 H -0.284 1.284 31 H -0.284 1.284 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.406 0.594 36 H 0.387 0.613 37 H 0.198 0.802 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.035 0.965 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 17.549 6.270 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 N -0.220 5.220 4 C 0.106 3.894 5 O -0.242 6.242 6 N -0.174 5.174 7 H 0.261 0.739 8 C -0.193 4.193 9 C 0.374 3.626 10 O -0.399 6.399 11 N -0.368 5.368 12 C -0.116 4.116 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.148 4.148 16 C 0.079 3.921 17 H 0.114 0.886 18 C -0.211 4.211 19 C -0.201 4.201 20 C 0.042 3.958 21 H 0.082 0.918 22 C -0.162 4.162 23 N -0.302 5.302 24 C -0.359 4.359 25 H 0.087 0.913 26 C -0.195 4.195 27 N -0.551 5.551 28 Si 0.738 3.262 29 H -0.216 1.216 30 H -0.211 1.211 31 H -0.211 1.211 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.264 0.736 36 H 0.220 0.780 37 H 0.213 0.787 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.054 0.946 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.242 17.863 5.675 18.784 hybrid contribution 2.282 -1.509 0.296 2.751 sum 1.040 16.355 5.971 17.442 Atomic orbital electron populations 1.20355 0.85866 1.04090 1.03314 1.20950 0.96926 0.85839 0.98747 1.70278 0.98571 1.30458 1.22674 1.20172 0.87414 0.78685 1.03145 1.84849 1.43340 1.61605 1.34423 1.43727 1.08887 1.07915 1.56849 0.73868 1.21007 0.82788 0.95670 1.19832 1.16651 0.86193 0.82218 0.77523 1.90840 1.15703 1.82733 1.50635 1.46318 1.08682 1.07700 1.74122 1.25363 1.00346 0.77196 1.08651 1.21287 0.94910 0.97007 0.97298 0.93234 1.22138 1.01845 0.92471 0.98378 1.21410 0.87561 0.96005 0.87141 0.88552 1.23412 0.99580 0.98260 0.99816 1.23312 0.98118 0.98925 0.99706 1.21530 0.92413 0.86957 0.94882 0.91788 1.22188 0.99499 0.97761 0.96756 1.45050 1.45147 0.99159 1.40891 1.18856 1.32695 0.88564 0.95795 0.91319 1.25027 1.00268 0.98418 0.95749 1.69872 1.51502 1.20283 1.13423 0.86287 0.79001 0.81455 0.79464 1.21620 1.21092 1.21083 0.90491 0.90900 0.88698 0.73616 0.78004 0.78704 0.92804 0.89542 0.94217 0.92562 0.89313 0.88964 0.92938 0.91748 0.94628 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.87 36.00 0.36 -0.50 16 2 C 0.11 1.38 7.14 -82.54 -0.59 0.79 16 3 N -0.49 -6.14 11.22 -10.83 -0.12 -6.26 16 4 C 0.41 4.11 9.43 -89.59 -0.84 3.27 16 5 O -0.44 -3.21 13.62 -17.28 -0.24 -3.45 16 6 N -0.56 -5.01 6.12 -10.91 -0.07 -5.07 16 7 H 0.42 2.56 8.32 -40.82 -0.34 2.22 16 8 C -0.08 -0.93 7.08 -81.98 -0.58 -1.51 16 9 C 0.59 7.96 7.53 -12.98 -0.10 7.87 16 10 O -0.52 -8.47 14.80 5.16 0.08 -8.39 16 11 N -0.72 -8.90 4.38 -61.71 -0.27 -9.17 16 12 C 0.00 0.04 2.68 -4.04 -0.01 0.03 16 13 C -0.09 -1.40 2.76 -90.47 -0.25 -1.65 16 14 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.11 -2.15 5.21 -26.00 -0.14 -2.28 16 16 C 0.19 4.03 3.13 -65.45 -0.20 3.83 16 17 H 0.10 2.41 6.91 -51.93 -0.36 2.06 16 18 C -0.17 -3.14 5.70 -25.47 -0.15 -3.28 16 19 C -0.16 -2.80 5.70 -25.48 -0.15 -2.95 16 20 C 0.15 2.89 4.33 -65.71 -0.28 2.61 16 21 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 22 C -0.12 -2.05 5.27 -26.26 -0.14 -2.19 16 23 N -0.58 -13.64 2.78 -152.42 -0.42 -14.06 16 24 C -0.23 -6.06 10.34 -15.06 -0.16 -6.22 16 25 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 26 C 0.00 0.10 5.43 -17.43 -0.09 0.00 16 27 N -0.91 -24.64 10.33 55.49 0.57 -24.07 16 28 Si 0.91 21.13 29.56 -169.99 -5.02 16.10 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.09 1.13 6.47 -51.93 -0.34 0.79 16 35 H 0.41 0.73 9.06 45.56 0.41 1.14 16 36 H 0.39 3.90 6.57 -40.82 -0.27 3.64 16 37 H 0.20 3.14 1.11 -166.17 -0.18 2.96 16 38 H 0.05 0.84 8.00 -51.93 -0.42 0.42 16 39 H 0.09 2.02 7.39 -51.93 -0.38 1.63 16 40 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.49 4.85 -51.93 -0.25 1.24 16 43 H 0.09 1.46 3.95 -51.93 -0.21 1.25 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.04 0.48 6.73 -51.93 -0.35 0.13 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -31.68 356.36 -9.05 -40.73 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.61 Total: 10.46 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -3.32 Total: -2.20 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.31 Total: -58.63 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.16 Total: -11.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.68 -9.05 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048536746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.405 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds