Wall clock time and date at job start Tue Mar 31 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33222 * 126.02115 * 2 1 4 4 C 1.31537 * 109.76709 * 180.02562 * 3 2 1 5 5 O 1.35195 * 125.49427 * 179.97438 * 4 3 2 6 6 N 1.34948 * 109.00973 * 359.75972 * 4 3 2 7 7 H 0.96995 * 126.54612 * 180.26945 * 6 4 3 8 8 C 1.36719 * 126.01962 * 180.02562 * 2 1 3 9 9 C 1.46380 * 126.82455 * 359.95656 * 8 2 1 10 10 O 1.21737 * 120.00175 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00174 * 179.97438 * 9 8 2 12 12 C 1.46500 * 120.00072 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46900 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.43554 * 59.82854 * 13 12 11 15 15 C 1.53153 * 109.43487 * 179.69415 * 13 12 11 16 16 C 1.54245 * 108.84149 * 66.08408 * 15 13 12 17 17 H 1.09003 * 112.33394 * 187.68952 * 16 15 13 18 18 C 1.54612 * 107.85985 * 312.47604 * 16 15 13 19 19 C 1.53793 * 104.84767 * 88.46883 * 18 16 15 20 20 C 1.54605 * 104.85403 * 0.02562 * 19 18 16 21 21 H 1.09000 * 112.69780 * 146.96041 * 20 19 18 22 22 C 1.53140 * 109.43617 * 299.91976 * 13 12 11 23 23 N 1.48290 * 106.99158 * 64.13340 * 16 15 13 24 24 C 1.36935 * 128.21074 * 107.52883 * 23 16 15 25 25 H 1.07998 * 120.00212 * 154.74284 * 24 23 16 26 26 C 1.38809 * 120.00049 * 334.73788 * 24 23 16 27 27 N 1.31625 * 120.00079 * 354.98212 * 26 24 23 28 28 Si 1.86799 * 120.00272 * 174.97930 * 26 24 23 29 29 H 1.48498 * 109.47293 * 180.02562 * 28 26 24 30 30 H 1.48497 * 109.47079 * 300.00517 * 28 26 24 31 31 H 1.48496 * 109.47059 * 60.00221 * 28 26 24 32 32 H 1.08999 * 109.47525 * 269.98456 * 1 2 3 33 33 H 1.09008 * 109.47119 * 29.98392 * 1 2 3 34 34 H 1.09003 * 109.46822 * 149.98019 * 1 2 3 35 35 H 0.96701 * 114.00229 * 90.02329 * 5 4 3 36 36 H 0.96996 * 119.99758 * 359.97438 * 11 9 8 37 37 H 1.08991 * 109.47386 * 59.99751 * 12 11 9 38 38 H 1.09004 * 109.47065 * 299.99629 * 12 11 9 39 39 H 1.09004 * 109.57097 * 185.99514 * 15 13 12 40 40 H 1.09007 * 109.56777 * 306.23684 * 15 13 12 41 41 H 1.08997 * 110.38536 * 207.17397 * 18 16 15 42 42 H 1.09000 * 110.38032 * 329.54206 * 18 16 15 43 43 H 1.09001 * 110.43537 * 241.09801 * 19 18 16 44 44 H 1.09003 * 110.24096 * 118.80256 * 19 18 16 45 45 H 1.09005 * 109.57260 * 174.00759 * 22 13 12 46 46 H 1.09000 * 109.67132 * 53.70424 * 22 13 12 47 47 H 0.96998 * 120.00242 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0775 0.0000 4 6 3.5532 0.7093 -0.0006 5 8 4.6149 1.5463 -0.0012 6 7 3.6181 -0.6386 0.0044 7 1 4.4242 -1.1780 0.0089 8 6 2.3110 -1.1058 -0.0005 9 6 1.8792 -2.5045 -0.0002 10 8 0.6923 -2.7751 0.0010 11 7 2.7957 -3.4927 -0.0013 12 6 2.3635 -4.8925 -0.0005 13 6 3.5914 -5.8053 -0.0027 14 1 4.1923 -5.6070 0.8849 15 6 3.1388 -7.2684 0.0059 16 6 2.4195 -7.5751 -1.3237 17 1 1.9558 -8.5616 -1.3258 18 6 1.4049 -6.4386 -1.5871 19 6 2.1996 -5.3721 -2.3594 20 6 3.6234 -5.9592 -2.4944 21 1 4.1130 -5.6660 -3.4231 22 6 4.4278 -5.5312 -1.2558 23 7 3.4241 -7.4257 -2.4042 24 6 4.0214 -8.4088 -3.1472 25 1 4.4023 -8.1847 -4.1327 26 6 4.1374 -9.6932 -2.6338 27 7 3.7636 -9.9437 -1.3969 28 14 4.8238 -11.0661 -3.6983 29 1 4.8432 -12.3319 -2.9220 30 1 3.9679 -11.2360 -4.8998 31 1 6.2056 -10.7221 -4.1195 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3634 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5142 35 1 4.9245 1.7897 0.8820 36 1 3.7413 -3.2771 -0.0026 37 1 1.7641 -5.0883 -0.8895 38 1 1.7666 -5.0880 0.8904 39 1 4.0072 -7.9186 0.1117 40 1 2.4550 -7.4341 0.8385 41 1 0.5755 -6.8030 -2.1931 42 1 1.0379 -6.0315 -0.6450 43 1 2.2256 -4.4372 -1.7995 44 1 1.7598 -5.2136 -3.3441 45 1 5.3552 -6.1020 -1.2079 46 1 4.6567 -4.4674 -1.3188 47 1 3.8443 -10.8414 -1.0382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048536746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:52 Heat of formation + Delta-G solvation = 77.533838 kcal Electronic energy + Delta-G solvation = -30272.377689 eV Core-core repulsion = 26267.004736 eV Total energy + Delta-G solvation = -4005.372952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.36855 -42.65065 -40.00497 -38.35469 -36.29203 -34.82939 -34.08690 -32.95978 -32.34831 -31.81538 -31.30620 -28.82179 -27.56690 -25.44219 -24.82435 -23.86963 -22.60917 -22.05179 -21.24246 -20.92796 -20.58553 -20.20229 -18.96746 -18.54756 -17.78321 -17.28459 -17.00504 -16.57647 -16.21889 -16.01488 -15.64590 -15.08633 -14.72632 -14.54334 -14.41991 -14.19795 -14.16972 -13.68006 -13.58951 -13.37940 -13.28158 -13.13547 -13.06205 -12.98655 -12.81665 -12.67250 -12.51327 -12.29342 -11.99398 -11.52958 -11.43765 -11.28490 -11.16057 -11.01835 -10.97153 -10.82893 -10.79911 -10.48896 -9.68464 -9.32965 -8.59904 -7.85083 -5.23421 0.09989 1.35069 1.47064 1.48251 1.54227 1.60659 2.13644 2.23646 2.50807 2.85005 3.33600 3.61602 3.73502 3.88856 3.95862 3.98025 4.04775 4.14407 4.25568 4.30158 4.38571 4.47722 4.55989 4.61344 4.73449 4.80448 4.87616 4.91789 4.96932 5.01175 5.02647 5.05904 5.09987 5.20742 5.28626 5.40156 5.45713 5.51528 5.53386 5.56288 5.62968 5.78486 5.81710 5.94928 6.32290 6.42750 6.68515 6.73302 7.12369 7.14050 7.77080 8.62807 9.27022 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024376 B = 0.002842 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.412715 B = 9848.945791 C =10320.382026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.099 3.901 3 N -0.520 5.520 4 C 0.423 3.577 5 O -0.441 6.441 6 N -0.540 5.540 7 H 0.437 0.563 8 C -0.090 4.090 9 C 0.593 3.407 10 O -0.551 6.551 11 N -0.708 5.708 12 C 0.015 3.985 13 C -0.075 4.075 14 H 0.070 0.930 15 C -0.101 4.101 16 C 0.180 3.820 17 H 0.052 0.948 18 C -0.163 4.163 19 C -0.149 4.149 20 C 0.141 3.859 21 H 0.062 0.938 22 C -0.114 4.114 23 N -0.605 5.605 24 C -0.241 4.241 25 H 0.066 0.934 26 C -0.047 4.047 27 N -0.927 5.927 28 Si 0.966 3.034 29 H -0.295 1.295 30 H -0.283 1.283 31 H -0.279 1.279 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.432 0.568 36 H 0.401 0.599 37 H 0.185 0.815 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.667 20.134 6.662 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.036 4.036 3 N -0.252 5.252 4 C 0.121 3.879 5 O -0.247 6.247 6 N -0.160 5.160 7 H 0.279 0.721 8 C -0.205 4.205 9 C 0.380 3.620 10 O -0.430 6.430 11 N -0.359 5.359 12 C -0.104 4.104 13 C -0.094 4.094 14 H 0.088 0.912 15 C -0.141 4.141 16 C 0.073 3.927 17 H 0.070 0.930 18 C -0.201 4.201 19 C -0.187 4.187 20 C 0.034 3.966 21 H 0.080 0.920 22 C -0.153 4.153 23 N -0.327 5.327 24 C -0.371 4.371 25 H 0.083 0.917 26 C -0.243 4.243 27 N -0.573 5.573 28 Si 0.795 3.205 29 H -0.222 1.222 30 H -0.209 1.209 31 H -0.205 1.205 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.294 0.706 36 H 0.237 0.763 37 H 0.201 0.799 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.290 20.485 6.079 21.370 hybrid contribution 2.044 -2.208 0.169 3.014 sum 1.754 18.276 6.248 19.394 Atomic orbital electron populations 1.20343 0.85519 1.03879 1.03719 1.21208 0.97582 0.86208 0.98585 1.70268 0.99741 1.30893 1.24315 1.20222 0.87490 0.79200 1.01014 1.84819 1.42176 1.60904 1.36754 1.43549 1.08558 1.07724 1.56120 0.72062 1.20639 0.83901 0.94592 1.21351 1.16752 0.85750 0.82767 0.76751 1.90835 1.16995 1.83265 1.51911 1.46048 1.09457 1.06416 1.73973 1.24913 0.99207 0.78197 1.08060 1.21132 0.95643 0.94670 0.97936 0.91158 1.21926 1.00149 0.94448 0.97606 1.21342 0.88250 0.95210 0.87893 0.92973 1.23368 0.98495 0.97279 1.00971 1.23245 0.96340 0.99183 0.99958 1.21771 0.94095 0.84644 0.96066 0.91986 1.22065 0.97885 0.99862 0.95533 1.45246 1.45791 1.00643 1.41011 1.19115 1.32165 0.89698 0.96118 0.91671 1.25678 1.01322 1.00356 0.96900 1.70048 1.52696 1.19917 1.14590 0.85369 0.78475 0.78775 0.77897 1.22165 1.20941 1.20516 0.89781 0.90075 0.89847 0.70571 0.76270 0.79927 0.92793 0.93600 0.93312 0.93098 0.87292 0.86716 0.92872 0.94236 0.90357 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.87 71.24 0.70 -0.88 16 2 C 0.10 2.29 7.14 41.99 0.30 2.59 16 3 N -0.52 -11.87 11.22 -301.68 -3.39 -15.26 16 4 C 0.42 7.19 9.43 179.99 1.70 8.89 16 5 O -0.44 -4.83 13.62 -84.75 -1.15 -5.99 16 6 N -0.54 -7.83 6.12 -300.14 -1.84 -9.67 16 7 H 0.44 3.44 8.32 -92.71 -0.77 2.67 16 8 C -0.09 -1.89 7.08 39.80 0.28 -1.61 16 9 C 0.59 14.38 7.53 86.36 0.65 15.03 16 10 O -0.55 -16.76 14.80 -4.47 -0.07 -16.83 16 11 N -0.71 -14.98 4.38 -467.36 -2.05 -17.03 16 12 C 0.02 0.42 2.68 86.38 0.23 0.65 16 13 C -0.07 -2.27 2.76 -10.70 -0.03 -2.30 16 14 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 15 C -0.10 -4.04 5.21 31.07 0.16 -3.87 16 16 C 0.18 7.98 3.13 45.62 0.14 8.12 16 17 H 0.05 2.75 6.91 -2.39 -0.02 2.74 16 18 C -0.16 -5.83 5.70 31.41 0.18 -5.65 16 19 C -0.15 -4.88 5.70 31.41 0.18 -4.70 16 20 C 0.14 5.28 4.33 45.45 0.20 5.47 16 21 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 22 C -0.11 -3.58 5.27 30.90 0.16 -3.42 16 23 N -0.60 -28.85 2.78 -636.15 -1.77 -30.62 16 24 C -0.24 -13.00 10.34 84.03 0.87 -12.13 16 25 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 26 C -0.05 -2.56 5.43 84.86 0.46 -2.09 16 27 N -0.93 -52.45 10.33 21.65 0.22 -52.23 16 28 Si 0.97 44.51 29.56 68.60 2.03 46.54 16 29 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 30 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 31 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 1.91 6.47 -2.39 -0.02 1.90 16 35 H 0.43 -0.13 9.06 -74.06 -0.67 -0.80 16 36 H 0.40 6.26 6.57 -92.71 -0.61 5.65 16 37 H 0.19 5.43 1.11 -109.69 -0.12 5.31 16 38 H 0.05 1.51 8.00 -2.39 -0.02 1.49 16 39 H 0.05 2.20 7.39 -2.38 -0.02 2.18 16 40 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.11 3.48 4.85 -2.39 -0.01 3.47 16 43 H 0.12 3.26 3.95 -2.39 -0.01 3.25 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.08 1.80 6.73 -2.39 -0.02 1.78 16 47 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -71.00 356.36 -2.93 -73.92 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -1.11 Total: 23.08 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.19 Total: 4.08 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -8.81 Total: -124.80 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.22 Total: -22.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.00 -2.93 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048536746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.458 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds